PDB Short entry for 2MJU HEADER SPLICING 16-JAN-14 2MJU TITLE SOLUTION STRUCTURE OF A C TERMINAL FRAGMENT OF THE NEURONAL ISOFORM OF TITLE 2 THE POLYPYRIMIDINE TRACT BINDING PROTEIN (NPTB) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPYRIMIDINE TRACT-BINDING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM34, UNP RESIDUES 325-531; COMPND 5 SYNONYM: NEURAL POLYPYRIMIDINE TRACT-BINDING PROTEIN, NEURALLY- COMPND 6 ENRICHED HOMOLOG OF PTB, PTB-LIKE PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTBP2, NPTB, PTB, PTBLP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(+); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A(+) KEYWDS NPTB, SPLICING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR V.ESTEVE,M.BLATTER,F.H.-T.ALLAIN REVDAT 3 14-JUN-23 2MJU 1 REMARK REVDAT 2 07-MAY-14 2MJU 1 JRNL REVDAT 1 12-FEB-14 2MJU 0 JRNL AUTH A.JOSHI,V.ESTEVE,A.N.BUCKROYD,M.BLATTER,F.H.ALLAIN,S.CURRY JRNL TITL SOLUTION AND CRYSTAL STRUCTURES OF A C-TERMINAL FRAGMENT OF JRNL TITL 2 THE NEURONAL ISOFORM OF THE POLYPYRIMIDINE TRACT BINDING JRNL TITL 3 PROTEIN (NPTB). JRNL REF PEERJ V. 2 E305 2014 JRNL REFN ESSN 2167-8359 JRNL PMID 24688880 JRNL DOI 10.7717/PEERJ.305 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 12 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000103699. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 0.03 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 NPTB, 20 MM SODIUM CHLORIDE, 10 REMARK 210 MM SODIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O; 1 MM [U-100% 15N] NPTB, 20 REMARK 210 MM SODIUM CHLORIDE, 10 MM SODIUM REMARK 210 PHOSPHATE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HN(CO)CA; 3D HNCACB; REMARK 210 3D CBCA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 2D 1H-1H TOCSY; 2D 1H- REMARK 210 1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, TOPSPIN 3.1, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 347 19.26 58.97 REMARK 500 1 MET A 349 -16.18 -140.23 REMARK 500 1 THR A 351 -55.03 -168.10 REMARK 500 1 ASN A 373 99.07 -58.01 REMARK 500 1 LYS A 374 4.94 54.19 REMARK 500 1 ASP A 384 56.48 28.68 REMARK 500 1 ASN A 386 8.50 -162.08 REMARK 500 1 ASN A 396 -9.20 -56.87 REMARK 500 1 LYS A 399 45.83 37.37 REMARK 500 1 ILE A 405 68.59 33.95 REMARK 500 1 GLN A 416 -34.50 -137.52 REMARK 500 1 LEU A 417 64.29 25.84 REMARK 500 1 ASP A 423 27.30 47.54 REMARK 500 1 GLN A 425 -45.90 -140.28 REMARK 500 1 ASP A 430 42.12 -74.01 REMARK 500 1 PHE A 431 11.12 -67.28 REMARK 500 1 PRO A 435 6.85 -69.24 REMARK 500 1 LEU A 436 12.94 -144.17 REMARK 500 1 ARG A 438 25.20 -146.08 REMARK 500 1 LYS A 445 6.94 43.70 REMARK 500 1 PHE A 447 20.18 -146.61 REMARK 500 1 ASN A 449 -6.23 59.44 REMARK 500 1 ASN A 461 113.43 149.39 REMARK 500 1 ALA A 467 -157.09 -141.59 REMARK 500 1 ALA A 476 1.45 -68.71 REMARK 500 1 THR A 481 30.09 -145.48 REMARK 500 1 VAL A 482 -72.14 -144.94 REMARK 500 1 ASP A 490 12.59 -146.84 REMARK 500 1 ASN A 515 -26.59 -160.45 REMARK 500 1 HIS A 520 52.58 29.42 REMARK 500 1 HIS A 521 81.98 49.09 REMARK 500 2 ARG A 326 10.46 -146.88 REMARK 500 2 MET A 349 -16.03 -140.19 REMARK 500 2 THR A 351 -53.85 -168.20 REMARK 500 2 TYR A 372 12.12 -147.57 REMARK 500 2 ASN A 373 100.87 -56.08 REMARK 500 2 LYS A 374 0.31 53.57 REMARK 500 2 ASP A 384 51.20 29.28 REMARK 500 2 ASN A 386 8.93 -162.04 REMARK 500 2 ASN A 396 -6.67 -56.50 REMARK 500 2 LYS A 399 43.29 35.88 REMARK 500 2 TYR A 401 -30.90 -142.17 REMARK 500 2 ILE A 405 71.31 33.53 REMARK 500 2 GLN A 416 -33.48 -132.09 REMARK 500 2 LEU A 417 63.70 26.95 REMARK 500 2 GLN A 425 -45.73 -141.01 REMARK 500 2 ASP A 430 38.39 -72.04 REMARK 500 2 PHE A 431 6.37 -65.57 REMARK 500 2 ARG A 438 26.84 -155.85 REMARK 500 2 LYS A 445 27.43 39.39 REMARK 500 REMARK 500 THIS ENTRY HAS 663 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19737 RELATED DB: BMRB DBREF 2MJU A 325 531 UNP Q9UKA9 PTBP2_HUMAN 325 531 SEQRES 1 A 207 GLY ARG VAL GLY MET PRO GLY VAL SER ALA GLY GLY ASN SEQRES 2 A 207 THR VAL LEU LEU VAL SER ASN LEU ASN GLU GLU MET VAL SEQRES 3 A 207 THR PRO GLN SER LEU PHE THR LEU PHE GLY VAL TYR GLY SEQRES 4 A 207 ASP VAL GLN ARG VAL LYS ILE LEU TYR ASN LYS LYS ASP SEQRES 5 A 207 SER ALA LEU ILE GLN MET ALA ASP GLY ASN GLN SER GLN SEQRES 6 A 207 LEU ALA MET ASN HIS LEU ASN GLY GLN LYS MET TYR GLY SEQRES 7 A 207 LYS ILE ILE ARG VAL THR LEU SER LYS HIS GLN THR VAL SEQRES 8 A 207 GLN LEU PRO ARG GLU GLY LEU ASP ASP GLN GLY LEU THR SEQRES 9 A 207 LYS ASP PHE GLY ASN SER PRO LEU HIS ARG PHE LYS LYS SEQRES 10 A 207 PRO GLY SER LYS ASN PHE GLN ASN ILE PHE PRO PRO SER SEQRES 11 A 207 ALA THR LEU HIS LEU SER ASN ILE PRO PRO SER VAL ALA SEQRES 12 A 207 GLU GLU ASP LEU ARG THR LEU PHE ALA ASN THR GLY GLY SEQRES 13 A 207 THR VAL LYS ALA PHE LYS PHE PHE GLN ASP HIS LYS MET SEQRES 14 A 207 ALA LEU LEU GLN MET ALA THR VAL GLU GLU ALA ILE GLN SEQRES 15 A 207 ALA LEU ILE ASP LEU HIS ASN TYR ASN LEU GLY GLU ASN SEQRES 16 A 207 HIS HIS LEU ARG VAL SER PHE SER LYS SER THR ILE HELIX 1 1 PRO A 352 TYR A 362 1 11 HELIX 2 2 GLN A 387 ASN A 396 1 10 HELIX 3 3 ASP A 430 SER A 434 5 5 HELIX 4 4 ALA A 467 GLY A 479 1 13 HELIX 5 5 THR A 500 HIS A 512 1 13 SHEET 1 A 5 ARG A 406 THR A 408 0 SHEET 2 A 5 LEU A 340 SER A 343 -1 N SER A 343 O ARG A 406 SHEET 3 A 5 SER A 377 MET A 382 -1 O ILE A 380 N LEU A 340 SHEET 4 A 5 VAL A 365 LEU A 371 -1 N LYS A 369 O LEU A 379 SHEET 5 A 5 THR A 428 LYS A 429 -1 O LYS A 429 N VAL A 368 SHEET 1 B 4 ALA A 484 PHE A 487 0 SHEET 2 B 4 MET A 493 GLN A 497 -1 O LEU A 495 N LYS A 486 SHEET 3 B 4 THR A 456 SER A 460 -1 N LEU A 457 O LEU A 496 SHEET 4 B 4 ARG A 523 SER A 525 -1 O SER A 525 N HIS A 458 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000