PDB Short entry for 2MKF HEADER SIGNALING PROTEIN 06-FEB-14 2MKF TITLE SOLUTION STRUCTURE OF THE E81 DELETION MUTANT OF THE TANDEM UIMS OF TITLE 2 RAP80 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRCA1-A COMPLEX SUBUNIT RAP80; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UIM 1-2 (UNP RESIDUES 74-131); COMPND 5 SYNONYM: RECEPTOR-ASSOCIATED PROTEIN 80, RETINOID X RECEPTOR- COMPND 6 INTERACTING PROTEIN 110, UBIQUITIN INTERACTION MOTIF-CONTAINING COMPND 7 PROTEIN 1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UIMC1, RAP80, RXRIP110; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS UIM, UBIQUITIN-INTERACTING MOTIF, DNA DAMAGE RESPONSE, SIGNALING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR ANAMIKA,C.J.MARKIN,M.K.ROUT,L.SPYRACOPOULOS REVDAT 4 14-JUN-23 2MKF 1 REMARK SEQADV REVDAT 3 21-MAY-14 2MKF 1 JRNL REVDAT 2 02-APR-14 2MKF 1 JRNL REVDAT 1 19-MAR-14 2MKF 0 JRNL AUTH ANAMIKA,C.J.MARKIN,M.K.ROUT,L.SPYRACOPOULOS JRNL TITL MOLECULAR BASIS FOR IMPAIRED DNA DAMAGE RESPONSE FUNCTION JRNL TITL 2 ASSOCIATED WITH THE RAP80 DELTA E81 DEFECT. JRNL REF J.BIOL.CHEM. V. 289 12852 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24627472 JRNL DOI 10.1074/JBC.M113.538280 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000103720. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278; 278 REMARK 210 PH : 7.3; 7.3 REMARK 210 IONIC STRENGTH : 150; 150 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1 MM [U-100% 15N] DELTAE81 REMARK 210 -RAP80-TUIM, 90% H2O/10% D2O; REMARK 210 0.5-1 MM [U-100% 13C; U-100% 15N] REMARK 210 DELTAE81-RAP80-TUIM, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, VNMRJ, NMRPIPE, CARA REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A -2 -60.85 -149.93 REMARK 500 1 ALA A 96 -38.12 72.67 REMARK 500 1 ARG A 97 -66.71 -170.58 REMARK 500 1 GLU A 98 -51.99 -151.26 REMARK 500 3 LEU A -2 97.84 55.45 REMARK 500 3 ALA A 96 38.92 73.39 REMARK 500 3 GLU A 98 9.96 -164.64 REMARK 500 3 ALA A 128 14.01 80.62 REMARK 500 4 ALA A 96 35.89 70.81 REMARK 500 4 ARG A 97 -91.00 -82.67 REMARK 500 4 ALA A 128 -5.05 78.10 REMARK 500 5 LEU A -2 -142.37 45.94 REMARK 500 5 ALA A 96 -49.33 71.12 REMARK 500 6 ALA A 96 -32.35 70.27 REMARK 500 6 ALA A 128 4.97 80.12 REMARK 500 7 ALA A 96 36.07 70.35 REMARK 500 7 ARG A 97 152.13 83.32 REMARK 500 7 GLU A 98 94.54 66.85 REMARK 500 8 ARG A 97 -145.85 -172.04 REMARK 500 8 GLU A 98 -125.97 67.93 REMARK 500 9 ARG A 97 95.34 44.18 REMARK 500 9 GLU A 98 -111.09 47.50 REMARK 500 9 ALA A 128 -3.25 75.31 REMARK 500 10 ARG A 97 13.54 54.28 REMARK 500 10 GLU A 98 -122.48 -149.00 REMARK 500 10 ALA A 128 -7.03 78.01 REMARK 500 11 ARG A 97 -144.88 -173.65 REMARK 500 11 GLU A 98 157.10 73.19 REMARK 500 11 ALA A 128 -5.50 77.54 REMARK 500 12 ALA A 96 -6.47 70.38 REMARK 500 12 ALA A 128 15.50 81.38 REMARK 500 14 ALA A 96 -32.50 70.74 REMARK 500 14 GLU A 98 -106.42 -138.30 REMARK 500 15 LEU A -2 73.64 51.57 REMARK 500 15 ALA A 96 -1.76 69.57 REMARK 500 15 ARG A 97 -158.29 -167.43 REMARK 500 15 GLU A 98 141.57 79.57 REMARK 500 16 ARG A 97 -102.15 -80.64 REMARK 500 17 ALA A 96 35.50 74.36 REMARK 500 18 ALA A 96 -17.77 70.95 REMARK 500 18 GLU A 98 -92.51 -160.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A1Q RELATED DB: PDB REMARK 900 STRUCTURE OF RAP80 TANDEM UIMS BOUND TO DIUBIQUITIN REMARK 900 RELATED ID: 19773 RELATED DB: BMRB REMARK 900 RELATED ID: 2MKG RELATED DB: PDB DBREF 2MKF A 74 131 UNP Q96RL1 UIMC1_HUMAN 74 131 SEQADV 2MKF GLY A -4 UNP Q96RL1 CLONING ARTIFACT SEQADV 2MKF PRO A -3 UNP Q96RL1 CLONING ARTIFACT SEQADV 2MKF LEU A -2 UNP Q96RL1 CLONING ARTIFACT SEQADV 2MKF GLY A -1 UNP Q96RL1 CLONING ARTIFACT SEQADV 2MKF SER A 0 UNP Q96RL1 CLONING ARTIFACT SEQADV 2MKF A UNP Q96RL1 GLU 81 DELETION SEQRES 1 A 62 GLY PRO LEU GLY SER ARG LYS ILE ALA GLN MET THR GLU SEQRES 2 A 62 GLU GLN PHE ALA LEU ALA LEU LYS MET SER GLU GLN GLU SEQRES 3 A 62 ALA ARG GLU VAL ASN SER GLN GLU GLU GLU GLU GLU GLU SEQRES 4 A 62 LEU LEU ARG LYS ALA ILE ALA GLU SER LEU ASN SER CYS SEQRES 5 A 62 ARG PRO SER ASP ALA SER ALA THR ARG SER HELIX 1 1 THR A 80 GLU A 95 1 15 HELIX 2 2 ASN A 100 SER A 120 1 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000