PDB Short entry for 2MKZ HEADER PROTEIN BINDING 17-FEB-14 2MKZ TITLE SOLUTION STRUCTURE OF A PROTEIN C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASOMAL UBIQUITIN RECEPTOR ADRM1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 270-407; COMPND 5 SYNONYM: 110 KDA CELL MEMBRANE GLYCOPROTEIN, GP110, ADHESION- COMPND 6 REGULATING MOLECULE 1, ARM-1, PROTEASOME REGULATORY PARTICLE NON- COMPND 7 ATPASE 13, HRPN13, RPN13 HOMOLOG; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADRM1, GP110; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PMCSG7 KEYWDS PROTEASOME, UCH37-BINDING DOMAIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.FENG,L.JIAO REVDAT 2 14-JUN-23 2MKZ 1 REMARK SEQADV REVDAT 1 31-DEC-14 2MKZ 0 JRNL AUTH L.JIAO,S.OUYANG,N.SHAW,G.SONG,Y.FENG,F.NIU,W.QIU,H.ZHU, JRNL AUTH 2 L.W.HUNG,X.ZUO,V.ELEONORA SHTYKOVA,P.ZHU,Y.H.DONG,R.XU, JRNL AUTH 3 Z.J.LIU JRNL TITL MECHANISM OF THE RPN13-INDUCED ACTIVATION OF UCH37 JRNL REF PROTEIN CELL V. 5 616 2014 JRNL REFN ISSN 1674-800X JRNL PMID 24752541 JRNL DOI 10.1007/S13238-014-0046-Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, SANE, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), DUGGAN, LEGGE, DYSON & REMARK 3 WRIGHT (SANE), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000103740. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 80 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.5-1.0 MM [U-13C; U-15N] ENTITY REMARK 210 -1, 40 MM SODIUM PHOSPHATE-2, 20 REMARK 210 MM POTASSIUM CHLORIDE-3, 0.02 % REMARK 210 DSS-4, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HNCO; 3D HN(CA)CO; 3D REMARK 210 HBHA(CO)NH; 3D HBHANH; 3D HCCH- REMARK 210 TOCSY; 3D CCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, NMRVIEW, CYANA REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 2 -138.58 -136.26 REMARK 500 1 ALA A 3 75.57 66.50 REMARK 500 1 SER A 67 -66.94 -150.90 REMARK 500 1 LYS A 132 123.38 82.98 REMARK 500 1 LEU A 140 -42.12 69.89 REMARK 500 2 ALA A 3 -50.88 61.63 REMARK 500 2 ALA A 6 69.25 -150.17 REMARK 500 2 ASN A 9 -179.49 -174.79 REMARK 500 2 ALA A 12 171.75 64.53 REMARK 500 2 VAL A 20 82.51 55.96 REMARK 500 2 LEU A 65 67.89 -102.61 REMARK 500 2 SER A 67 -69.92 -155.07 REMARK 500 2 LYS A 120 117.78 -168.83 REMARK 500 2 GLU A 122 179.78 65.89 REMARK 500 2 LYS A 124 74.35 46.43 REMARK 500 2 ASP A 127 -60.83 -161.41 REMARK 500 2 THR A 128 82.77 56.22 REMARK 500 2 GLU A 136 101.23 71.06 REMARK 500 2 LEU A 140 64.26 61.23 REMARK 500 3 ALA A 3 -39.03 71.35 REMARK 500 3 MET A 8 68.01 61.04 REMARK 500 3 VAL A 10 95.39 62.74 REMARK 500 3 ALA A 12 99.54 65.35 REMARK 500 3 PRO A 14 40.01 -81.27 REMARK 500 3 GLN A 18 169.09 69.32 REMARK 500 3 GLN A 19 -81.84 65.38 REMARK 500 3 SER A 67 -97.96 71.19 REMARK 500 3 PRO A 96 151.25 -48.90 REMARK 500 3 GLU A 122 160.09 66.84 REMARK 500 3 LYS A 124 -73.99 68.57 REMARK 500 3 ASP A 127 -80.44 -149.41 REMARK 500 3 THR A 128 81.79 54.98 REMARK 500 4 THR A 7 -177.64 178.47 REMARK 500 4 ASN A 9 139.94 176.59 REMARK 500 4 GLN A 18 -90.03 63.89 REMARK 500 4 SER A 67 -89.55 30.87 REMARK 500 4 LYS A 124 -63.64 -136.80 REMARK 500 4 LYS A 129 -39.84 -163.16 REMARK 500 4 ASP A 130 -87.93 42.62 REMARK 500 4 GLU A 136 159.12 76.99 REMARK 500 4 MET A 138 -81.96 72.96 REMARK 500 5 ALA A 3 -16.78 72.86 REMARK 500 5 ALA A 12 175.49 61.99 REMARK 500 5 ALA A 15 -68.84 -148.76 REMARK 500 5 VAL A 20 82.65 64.74 REMARK 500 5 THR A 66 -72.23 -75.29 REMARK 500 5 SER A 67 -58.35 -147.62 REMARK 500 5 GLU A 125 -73.86 68.60 REMARK 500 5 THR A 128 -77.63 -66.36 REMARK 500 5 LYS A 131 -174.06 57.68 REMARK 500 REMARK 500 THIS ENTRY HAS 220 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 7 ARG A 43 0.07 SIDE CHAIN REMARK 500 17 ARG A 43 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19801 RELATED DB: BMRB DBREF 2MKZ A 4 141 UNP Q16186 ADRM1_HUMAN 270 407 SEQADV 2MKZ SER A 1 UNP Q16186 EXPRESSION TAG SEQADV 2MKZ ASN A 2 UNP Q16186 EXPRESSION TAG SEQADV 2MKZ ALA A 3 UNP Q16186 EXPRESSION TAG SEQRES 1 A 141 SER ASN ALA ILE LEU ALA THR MET ASN VAL PRO ALA GLY SEQRES 2 A 141 PRO ALA GLY GLY GLN GLN VAL ASP LEU ALA SER VAL LEU SEQRES 3 A 141 THR PRO GLU ILE MET ALA PRO ILE LEU ALA ASN ALA ASP SEQRES 4 A 141 VAL GLN GLU ARG LEU LEU PRO TYR LEU PRO SER GLY GLU SEQRES 5 A 141 SER LEU PRO GLN THR ALA ASP GLU ILE GLN ASN THR LEU SEQRES 6 A 141 THR SER PRO GLN PHE GLN GLN ALA LEU GLY MET PHE SER SEQRES 7 A 141 ALA ALA LEU ALA SER GLY GLN LEU GLY PRO LEU MET CYS SEQRES 8 A 141 GLN PHE GLY LEU PRO ALA GLU ALA VAL GLU ALA ALA ASN SEQRES 9 A 141 LYS GLY ASP VAL GLU ALA PHE ALA LYS ALA MET GLN ASN SEQRES 10 A 141 ASN ALA LYS PRO GLU GLN LYS GLU GLY ASP THR LYS ASP SEQRES 11 A 141 LYS LYS ASP GLU GLU GLU ASP MET SER LEU ASP HELIX 1 1 ASP A 21 LEU A 26 1 6 HELIX 2 2 THR A 27 ALA A 36 1 10 HELIX 3 3 ASN A 37 LEU A 45 1 9 HELIX 4 4 PRO A 46 LEU A 48 5 3 HELIX 5 5 THR A 57 LEU A 65 1 9 HELIX 6 6 SER A 67 SER A 83 1 17 HELIX 7 7 GLY A 87 GLY A 94 5 8 HELIX 8 8 PRO A 96 GLY A 106 1 11 HELIX 9 9 ASP A 107 ALA A 119 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000