PDB Short entry for 2MPM HEADER CYTOKINE 26-MAY-14 2MPM TITLE STRUCTURAL BASIS OF RECEPTOR SULFOTYROSINE RECOGNITION BY A CC TITLE 2 CHEMOKINE: THE N-TERMINAL REGION OF CCR3 BOUND TO CCL11/EOTAXIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EOTAXIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C-C MOTIF CHEMOKINE 11, EOSINOPHIL CHEMOTACTIC PROTEIN, COMPND 5 SMALL-INDUCIBLE CYTOKINE A11; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CCR3; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CCL11, SCYA11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 OTHER_DETAILS: SYNTHETIC SULFOPEPTIDE KEYWDS CHEMOKINE CCL11, CHEMOKINE RECEPTOR CCR3, SULFOPEPTIDE, CYTOKINE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.J.MILLARD,J.P.LUDEMAN,M.CANALS,J.L.BRIDGFORD,M.G.HINDS,D.J.CLAYTON, AUTHOR 2 A.CHRISTOPOULOS,R.J.PAYNE,M.J.STONE REVDAT 1 10-DEC-14 2MPM 0 JRNL AUTH C.J.MILLARD,J.P.LUDEMAN,M.CANALS,J.L.BRIDGFORD,M.G.HINDS, JRNL AUTH 2 D.J.CLAYTON,A.CHRISTOPOULOS,R.J.PAYNE,M.J.STONE JRNL TITL STRUCTURAL BASIS OF RECEPTOR SULFOTYROSINE RECOGNITION BY A JRNL TITL 2 CC CHEMOKINE: THE N-TERMINAL REGION OF CCR3 BOUND TO JRNL TITL 3 CCL11/EOTAXIN-1. JRNL REF STRUCTURE V. 22 1571 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 25450766 JRNL DOI 10.1016/J.STR.2014.08.023 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.32, AQUA, PROCHECKNMR PROCHECKNMR REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MPM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-14. REMARK 100 THE RCSB ID CODE IS RCSB103899. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.2-0.4 MM [U-100% 13C, U-100% REMARK 210 15N] CCL11/EOTAXIN-1, 0.2-0.4 MM REMARK 210 CCR3 SU1617 SULFOPEPTIDE, 95% V/V REMARK 210 H2O, 5% V/V [U-100% 2H] D2O, 20 REMARK 210 MM [U-100% 2H] SODIUM ACETATE-D6, REMARK 210 0.02% V/V SODIUM AZIDE, 20 UM REMARK 210 DSS, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 2D 1H-1H REMARK 210 TOCSY; 2D 1H-1H NOESY; 3D REMARK 210 CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D H(CCO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-15N TOCSY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.1, SPARKY 3.92, CYANA REMARK 210 2.1, CANDID 2.1, TALOS, X-PLOR_ REMARK 210 NIH 2.32, AQUA, PROCHECKNMR REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 64 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 450 REMARK 450 SOURCE REMARK 450 EOTAXIN-1/CCL11 GROWN IN MINIMAL MEDIA FOR >99.8% REMARK 450 INCORPORATION OF 13C AND 15N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 2 161.32 -45.90 REMARK 500 1 SER A 4 20.54 -172.33 REMARK 500 1 THR A 7 92.83 -50.99 REMARK 500 1 THR A 8 88.78 -165.77 REMARK 500 1 CYS A 9 137.60 -172.38 REMARK 500 1 ASN A 12 -94.72 176.78 REMARK 500 1 ALA A 14 -130.58 -74.88 REMARK 500 1 ASN A 15 -103.33 -155.07 REMARK 500 1 ARG A 16 -86.90 -52.45 REMARK 500 1 LYS A 17 -158.98 -171.30 REMARK 500 1 LEU A 23 131.01 -39.45 REMARK 500 1 THR A 30 -143.18 -98.74 REMARK 500 1 SER A 31 -71.10 62.50 REMARK 500 1 CYS A 34 149.52 57.46 REMARK 500 1 GLN A 36 150.03 61.26 REMARK 500 1 LEU A 45 -88.52 -52.07 REMARK 500 1 ALA A 46 -4.74 179.14 REMARK 500 1 PRO A 53 64.71 -65.28 REMARK 500 1 LYS A 54 -55.62 -138.19 REMARK 500 1 PRO A 70 -5.31 -52.11 REMARK 500 1 GLU B 209 -129.80 60.03 REMARK 500 1 THR B 210 87.37 -161.81 REMARK 500 1 SER B 215 166.39 54.31 REMARK 500 1 TYS B 216 -3.28 -158.86 REMARK 500 1 TYS B 217 43.56 -148.54 REMARK 500 1 VAL B 220 -69.62 62.26 REMARK 500 2 SER A 4 46.07 -168.20 REMARK 500 2 CYS A 10 140.81 60.29 REMARK 500 2 ASN A 12 95.28 173.72 REMARK 500 2 LEU A 13 169.29 53.04 REMARK 500 2 ALA A 14 -121.85 -83.05 REMARK 500 2 ASN A 15 -91.13 -160.34 REMARK 500 2 ARG A 16 -82.77 -66.13 REMARK 500 2 LYS A 17 -161.03 -172.58 REMARK 500 2 LEU A 23 135.52 -39.99 REMARK 500 2 GLU A 24 -63.25 -105.50 REMARK 500 2 ILE A 29 -71.70 -101.86 REMARK 500 2 THR A 30 -179.39 48.52 REMARK 500 2 SER A 31 160.62 56.21 REMARK 500 2 LYS A 33 14.12 -160.35 REMARK 500 2 CYS A 34 150.14 -44.97 REMARK 500 2 GLN A 36 -178.69 -177.82 REMARK 500 2 LYS A 37 73.21 -62.35 REMARK 500 2 LYS A 44 49.42 -73.40 REMARK 500 2 LEU A 45 -92.37 -100.18 REMARK 500 2 ALA A 46 -8.78 -168.23 REMARK 500 2 ALA A 51 140.79 -171.76 REMARK 500 2 PRO A 53 67.43 -67.62 REMARK 500 2 LYS A 54 -43.86 -144.07 REMARK 500 2 SER A 69 85.51 59.03 REMARK 500 REMARK 500 THIS ENTRY HAS 560 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EOT RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF EOTAXIN, AN ENSEMBLE OF 32 NMR REMARK 900 SOLUTION STRUCTURES REMARK 900 RELATED ID: 2EOT RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF EOTAXIN, MINIMIZED AVERAGE REMARK 900 STRUCTRE REMARK 900 RELATED ID: 19989 RELATED DB: BMRB DBREF 2MPM A 1 74 UNP P51671 CCL11_HUMAN 24 97 DBREF 2MPM B 208 223 PDB 2MPM 2MPM 208 223 SEQRES 1 A 74 GLY PRO ALA SER VAL PRO THR THR CYS CYS PHE ASN LEU SEQRES 2 A 74 ALA ASN ARG LYS ILE PRO LEU GLN ARG LEU GLU SER TYR SEQRES 3 A 74 ARG ARG ILE THR SER GLY LYS CYS PRO GLN LYS ALA VAL SEQRES 4 A 74 ILE PHE LYS THR LYS LEU ALA LYS ASP ILE CYS ALA ASP SEQRES 5 A 74 PRO LYS LYS LYS TRP VAL GLN ASP SER MET LYS TYR LEU SEQRES 6 A 74 ASP GLN LYS SER PRO THR PRO LYS PRO SEQRES 1 B 16 VAL GLU THR PHE GLY THR THR SER TYS TYS ASP ASP VAL SEQRES 2 B 16 GLY LEU LEU MODRES 2MPM TYS B 216 TYR O-SULFO-L-TYROSINE MODRES 2MPM TYS B 217 TYR O-SULFO-L-TYROSINE HET TYS B 216 24 HET TYS B 217 24 HETNAM TYS O-SULFO-L-TYROSINE FORMUL 2 TYS 2(C9 H11 N O6 S) HELIX 1 1 LYS A 55 GLN A 67 1 13 SHEET 1 A 3 SER A 25 ILE A 29 0 SHEET 2 A 3 ALA A 38 LYS A 42 -1 O ILE A 40 N ARG A 27 SHEET 3 A 3 ASP A 48 ILE A 49 -1 O ILE A 49 N PHE A 41 SSBOND 1 CYS A 9 CYS A 34 1555 1555 2.02 SSBOND 2 CYS A 10 CYS A 50 1555 1555 2.02 LINK C SER B 215 N TYS B 216 1555 1555 1.33 LINK C TYS B 216 N TYS B 217 1555 1555 1.33 LINK C TYS B 217 N ASP B 218 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000