PDB Short entry for 2MSV HEADER MEMBRANE PROTEIN 07-AUG-14 2MSV TITLE SOLUTION STRUCTURE OF THE MLKL N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MIXED LINEAGE KINASE DOMAIN-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 1-154; COMPND 5 SYNONYM: HMLKL; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MLKL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-KG KEYWDS MEMBRANE PORE, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.SU,J.RIZO,B.QUADE,H.WANG,L.SUN,X.WANG REVDAT 2 29-OCT-14 2MSV 1 JRNL REVDAT 1 24-SEP-14 2MSV 0 JRNL AUTH L.SU,B.QUADE,H.WANG,L.SUN,X.WANG,J.RIZO JRNL TITL A PLUG RELEASE MECHANISM FOR MEMBRANE PERMEATION BY MLKL. JRNL REF STRUCTURE V. 22 1489 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 25220470 JRNL DOI 10.1016/J.STR.2014.07.014 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MSV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-14. REMARK 100 THE RCSB ID CODE IS RCSB104005. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 20 MM HEPES, 100 MM REMARK 210 SODIUM CHLORIDE, 2 MM TCEP, 95% REMARK 210 H2O/5% D2O; 1.5 MM [U-99% 15N] REMARK 210 PROTEIN, 20 MM HEPES, 100 MM REMARK 210 SODIUM CHLORIDE, 2 MM TCEP, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D C(CO)NH; 3D H(CCO)NH; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 3D 1H-15N REMARK 210 NOESY; 3D 1H-15N TOCSY; 3D 1H-13C REMARK 210 NOESY; HBCBCGCDHD; HBCBCGCDCEHE; REMARK 210 2D DQF-COSY; 2D 1H-1H NOESY; 2D REMARK 210 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMRJ, NMRPIPE, CNS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 5000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 PRO A -9 REMARK 465 GLY A -8 REMARK 465 ILE A -7 REMARK 465 SER A -6 REMARK 465 GLY A -5 REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 ILE A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 101 H LEU A 105 1.54 REMARK 500 O VAL A 13 H ARG A 17 1.56 REMARK 500 O LYS A 25 H ARG A 29 1.58 REMARK 500 O LEU A 4 H ILE A 8 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 24 39.00 37.42 REMARK 500 1 LYS A 50 89.46 51.94 REMARK 500 1 ARG A 51 161.88 66.72 REMARK 500 1 SER A 52 86.24 -177.61 REMARK 500 1 SER A 55 172.44 -57.94 REMARK 500 1 SER A 92 68.19 63.49 REMARK 500 1 LYS A 95 -18.70 79.48 REMARK 500 1 LEU A 97 -77.42 -45.12 REMARK 500 1 PHE A 98 42.69 -107.64 REMARK 500 1 PRO A 126 74.54 -58.76 REMARK 500 1 ALA A 131 20.87 -71.31 REMARK 500 1 ARG A 153 84.01 -60.36 REMARK 500 2 CYS A 24 33.83 37.53 REMARK 500 2 ASP A 47 -81.11 -72.71 REMARK 500 2 SER A 52 80.30 -176.92 REMARK 500 2 LYS A 95 -16.07 82.28 REMARK 500 2 LEU A 97 -76.68 -42.38 REMARK 500 2 PHE A 98 42.34 -105.38 REMARK 500 2 PRO A 126 73.80 -61.83 REMARK 500 2 ALA A 131 20.78 -72.14 REMARK 500 3 SER A 52 82.23 -158.25 REMARK 500 3 VAL A 53 77.57 -115.93 REMARK 500 3 PRO A 54 87.25 -67.54 REMARK 500 3 SER A 92 63.53 64.46 REMARK 500 3 LYS A 95 -22.99 81.26 REMARK 500 3 LEU A 97 -74.12 -48.79 REMARK 500 3 PHE A 98 42.92 -100.94 REMARK 500 3 PRO A 126 66.39 -64.85 REMARK 500 3 ALA A 131 20.92 -67.80 REMARK 500 3 ARG A 152 47.10 -92.65 REMARK 500 3 ARG A 153 79.21 -153.50 REMARK 500 4 CYS A 24 34.18 38.62 REMARK 500 4 LYS A 50 28.83 47.02 REMARK 500 4 ARG A 51 145.79 62.46 REMARK 500 4 SER A 52 115.41 -169.26 REMARK 500 4 PRO A 54 71.53 -67.87 REMARK 500 4 SER A 92 70.24 60.88 REMARK 500 4 ASP A 94 13.10 -140.71 REMARK 500 4 LYS A 95 -19.10 82.79 REMARK 500 4 LEU A 97 -74.04 -45.23 REMARK 500 4 PRO A 126 68.54 -63.72 REMARK 500 4 ILE A 127 78.88 49.57 REMARK 500 4 ALA A 131 20.90 -73.46 REMARK 500 4 ARG A 153 33.74 -156.58 REMARK 500 5 ASP A 47 -73.86 -51.18 REMARK 500 5 LYS A 50 -44.38 -177.29 REMARK 500 5 ARG A 51 133.60 -179.46 REMARK 500 5 SER A 52 113.90 -177.80 REMARK 500 5 PRO A 54 88.93 -59.71 REMARK 500 5 LYS A 95 -24.87 81.84 REMARK 500 REMARK 500 THIS ENTRY HAS 227 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25135 RELATED DB: BMRB DBREF 2MSV A 1 154 UNP Q8NB16 MLKL_HUMAN 1 154 SEQADV 2MSV GLY A -11 UNP Q8NB16 EXPRESSION TAG SEQADV 2MSV SER A -10 UNP Q8NB16 EXPRESSION TAG SEQADV 2MSV PRO A -9 UNP Q8NB16 EXPRESSION TAG SEQADV 2MSV GLY A -8 UNP Q8NB16 EXPRESSION TAG SEQADV 2MSV ILE A -7 UNP Q8NB16 EXPRESSION TAG SEQADV 2MSV SER A -6 UNP Q8NB16 EXPRESSION TAG SEQADV 2MSV GLY A -5 UNP Q8NB16 EXPRESSION TAG SEQADV 2MSV GLY A -4 UNP Q8NB16 EXPRESSION TAG SEQADV 2MSV GLY A -3 UNP Q8NB16 EXPRESSION TAG SEQADV 2MSV GLY A -2 UNP Q8NB16 EXPRESSION TAG SEQADV 2MSV GLY A -1 UNP Q8NB16 EXPRESSION TAG SEQADV 2MSV ILE A 0 UNP Q8NB16 EXPRESSION TAG SEQADV 2MSV LEU A 1 UNP Q8NB16 MET 1 ENGINEERED MUTATION SEQRES 1 A 166 GLY SER PRO GLY ILE SER GLY GLY GLY GLY GLY ILE LEU SEQRES 2 A 166 GLU ASN LEU LYS HIS ILE ILE THR LEU GLY GLN VAL ILE SEQRES 3 A 166 HIS LYS ARG CYS GLU GLU MET LYS TYR CYS LYS LYS GLN SEQRES 4 A 166 CYS ARG ARG LEU GLY HIS ARG VAL LEU GLY LEU ILE LYS SEQRES 5 A 166 PRO LEU GLU MET LEU GLN ASP GLN GLY LYS ARG SER VAL SEQRES 6 A 166 PRO SER GLU LYS LEU THR THR ALA MET ASN ARG PHE LYS SEQRES 7 A 166 ALA ALA LEU GLU GLU ALA ASN GLY GLU ILE GLU LYS PHE SEQRES 8 A 166 SER ASN ARG SER ASN ILE CYS ARG PHE LEU THR ALA SER SEQRES 9 A 166 GLN ASP LYS ILE LEU PHE LYS ASP VAL ASN ARG LYS LEU SEQRES 10 A 166 SER ASP VAL TRP LYS GLU LEU SER LEU LEU LEU GLN VAL SEQRES 11 A 166 GLU GLN ARG MET PRO VAL SER PRO ILE SER GLN GLY ALA SEQRES 12 A 166 SER TRP ALA GLN GLU ASP GLN GLN ASP ALA ASP GLU ASP SEQRES 13 A 166 ARG ARG ALA PHE GLN MET LEU ARG ARG ASP HELIX 1 1 ASN A 3 GLU A 20 1 18 HELIX 2 2 CYS A 24 GLN A 46 1 23 HELIX 3 3 SER A 55 PHE A 79 1 25 HELIX 4 4 ASN A 81 SER A 92 1 12 HELIX 5 5 PHE A 98 GLN A 120 1 23 HELIX 6 6 SER A 132 LEU A 151 1 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000