PDB Short entry for 2MT5 HEADER METAL BINDING PROTEIN 13-AUG-14 2MT5 TITLE ISOLATED RING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANAPHASE-PROMOTING COMPLEX SUBUNIT 11; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 17-84; COMPND 5 SYNONYM: APC11, CYCLOSOME SUBUNIT 11, HEPATOCELLULAR CARCINOMA- COMPND 6 ASSOCIATED RING FINGER PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ANAPC11, HSPC214; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: GST-FUSION WITH C-TERMINAL CYS-HIS6TAG KEYWDS RING DOMAIN, ZINC BINDING DOMAIN, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.G.BROWN,E.R.WATSON,F.WEISSMAN,G.ROYAPPA,B.SCHULMAN,M.JARVIS, AUTHOR 2 R.VANDERLINDEN,J.J.FRYE,R.QIAO,G.PETZOLD,J.PETERS,H.STARK REVDAT 3 14-JUN-23 2MT5 1 REMARK SEQADV LINK REVDAT 2 19-NOV-14 2MT5 1 JRNL REVDAT 1 29-OCT-14 2MT5 0 JRNL AUTH N.G.BROWN,E.R.WATSON,F.WEISSMANN,M.A.JARVIS,R.VANDERLINDEN, JRNL AUTH 2 C.R.GRACE,J.J.FRYE,R.QIAO,P.DUBE,G.PETZOLD,S.E.CHO, JRNL AUTH 3 O.ALSHARIF,J.BAO,I.F.DAVIDSON,J.J.ZHENG,A.NOURSE,I.KURINOV, JRNL AUTH 4 J.M.PETERS,H.STARK,B.A.SCHULMAN JRNL TITL MECHANISM OF POLYUBIQUITINATION BY HUMAN ANAPHASE-PROMOTING JRNL TITL 2 COMPLEX: RING REPURPOSING FOR UBIQUITIN CHAIN ASSEMBLY. JRNL REF MOL.CELL V. 56 246 2014 JRNL REFN ISSN 1097-2765 JRNL PMID 25306923 JRNL DOI 10.1016/J.MOLCEL.2014.09.009 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MT5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000104014. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN_1, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HN(CA)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 GLY A 1 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 9 -179.06 -54.66 REMARK 500 1 ARG A 13 62.76 34.39 REMARK 500 1 CYS A 20 154.05 -38.28 REMARK 500 1 ASP A 28 -70.91 -116.18 REMARK 500 1 CYS A 30 48.18 -148.14 REMARK 500 1 PRO A 31 -165.87 -69.75 REMARK 500 1 HIS A 39 119.27 -37.77 REMARK 500 1 MET A 43 -78.34 -36.61 REMARK 500 1 CYS A 45 -80.88 -52.77 REMARK 500 1 VAL A 55 -71.52 -37.75 REMARK 500 1 CYS A 59 147.90 -33.05 REMARK 500 1 MET A 61 -65.67 -127.25 REMARK 500 1 GLU A 65 108.05 -53.03 REMARK 500 1 TRP A 66 120.85 -37.81 REMARK 500 2 CYS A 9 -177.15 -53.04 REMARK 500 2 ARG A 13 35.18 34.78 REMARK 500 2 CYS A 20 152.53 -44.05 REMARK 500 2 VAL A 25 82.72 40.65 REMARK 500 2 CYS A 30 50.77 -156.43 REMARK 500 2 LEU A 32 -167.06 -102.57 REMARK 500 2 MET A 43 -78.23 -36.77 REMARK 500 2 CYS A 45 -81.14 -53.61 REMARK 500 2 HIS A 58 130.62 -38.82 REMARK 500 2 CYS A 59 150.41 -34.39 REMARK 500 2 MET A 61 -60.47 -102.19 REMARK 500 3 ASP A 6 28.79 40.89 REMARK 500 3 CYS A 9 164.98 -42.45 REMARK 500 3 CYS A 20 154.55 -38.09 REMARK 500 3 CYS A 23 73.00 -108.37 REMARK 500 3 ASP A 29 86.84 -54.11 REMARK 500 3 CYS A 30 71.04 175.54 REMARK 500 3 GLN A 36 -35.21 -37.43 REMARK 500 3 HIS A 39 119.55 -37.82 REMARK 500 3 MET A 43 -79.81 -37.31 REMARK 500 3 CYS A 45 -80.39 -44.25 REMARK 500 3 GLN A 56 164.24 -49.15 REMARK 500 3 HIS A 58 133.24 -38.06 REMARK 500 3 CYS A 59 153.27 -35.46 REMARK 500 3 MET A 61 -73.28 -134.01 REMARK 500 3 TRP A 66 119.75 -37.33 REMARK 500 4 GLU A 7 37.74 -91.10 REMARK 500 4 CYS A 9 166.62 -44.54 REMARK 500 4 PRO A 21 -89.79 -69.79 REMARK 500 4 ASP A 22 -34.85 -38.42 REMARK 500 4 VAL A 25 82.54 38.03 REMARK 500 4 CYS A 30 51.67 -142.40 REMARK 500 4 PRO A 31 -173.73 -69.70 REMARK 500 4 GLN A 36 -34.77 -38.18 REMARK 500 4 HIS A 39 114.61 -38.15 REMARK 500 4 CYS A 45 -75.93 -51.75 REMARK 500 REMARK 500 THIS ENTRY HAS 289 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 9 SG REMARK 620 2 CYS A 12 SG 101.0 REMARK 620 3 CYS A 45 SG 150.3 73.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 23 SG REMARK 620 2 CYS A 30 SG 81.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 37 SG REMARK 620 2 CYS A 59 SG 161.1 REMARK 620 3 CYS A 62 SG 89.1 74.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25149 RELATED DB: BMRB DBREF 2MT5 A 3 70 UNP Q9NYG5 APC11_HUMAN 17 84 SEQADV 2MT5 GLY A 1 UNP Q9NYG5 EXPRESSION TAG SEQADV 2MT5 SER A 2 UNP Q9NYG5 EXPRESSION TAG SEQRES 1 A 70 GLY SER VAL ALA ASN ASP GLU ASN CYS GLY ILE CYS ARG SEQRES 2 A 70 MET ALA PHE ASN GLY CYS CYS PRO ASP CYS LYS VAL PRO SEQRES 3 A 70 GLY ASP ASP CYS PRO LEU VAL TRP GLY GLN CYS SER HIS SEQRES 4 A 70 CYS PHE HIS MET HIS CYS ILE LEU LYS TRP LEU HIS ALA SEQRES 5 A 70 GLN GLN VAL GLN GLN HIS CYS PRO MET CYS ARG GLN GLU SEQRES 6 A 70 TRP LYS PHE LYS GLU HET ZN A 101 1 HET ZN A 102 1 HET ZN A 103 1 HETNAM ZN ZINC ION FORMUL 2 ZN 3(ZN 2+) HELIX 1 1 HIS A 42 GLN A 53 1 12 SHEET 1 A 2 VAL A 33 TRP A 34 0 SHEET 2 A 2 CYS A 40 PHE A 41 -1 O PHE A 41 N VAL A 33 LINK SG CYS A 9 ZN ZN A 101 1555 1555 2.97 LINK SG CYS A 12 ZN ZN A 101 1555 1555 3.00 LINK SG CYS A 23 ZN ZN A 102 1555 1555 2.98 LINK SG CYS A 30 ZN ZN A 102 1555 1555 2.93 LINK SG CYS A 37 ZN ZN A 103 1555 1555 2.96 LINK SG CYS A 45 ZN ZN A 101 1555 1555 2.95 LINK SG CYS A 59 ZN ZN A 103 1555 1555 2.97 LINK SG CYS A 62 ZN ZN A 103 1555 1555 2.97 SITE 1 AC1 5 CYS A 9 ILE A 11 CYS A 12 HIS A 42 SITE 2 AC1 5 CYS A 45 SITE 1 AC2 4 CYS A 20 CYS A 23 CYS A 30 HIS A 44 SITE 1 AC3 4 CYS A 37 HIS A 39 CYS A 59 CYS A 62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000