PDB Short entry for 2MVN HEADER TRANSLATION 09-OCT-14 2MVN TITLE SOLUTION STRUCTURE OF EEF1BDELTA CAR DOMAIN IN TCTP-BOUND STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR 1-DELTA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CAR DOMAIN (UNP RESIDUES 153-192); COMPND 5 SYNONYM: EEF1BDELTA, EF-1-DELTA, ANTIGEN NY-CO-4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EEF1D, EF1D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GUANINE NUCLEOTIDE EXCHANGE FACTOR, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.WU,Y.FENG REVDAT 4 14-JUN-23 2MVN 1 REMARK SEQADV REVDAT 3 15-APR-15 2MVN 1 JRNL REVDAT 2 11-FEB-15 2MVN 1 JRNL REVDAT 1 04-FEB-15 2MVN 0 JRNL AUTH H.WU,W.GONG,X.YAO,J.WANG,S.PERRETT,Y.FENG JRNL TITL EVOLUTIONARILY CONSERVED BINDING OF TRANSLATIONALLY JRNL TITL 2 CONTROLLED TUMOR PROTEIN TO EUKARYOTIC ELONGATION FACTOR 1B. JRNL REF J.BIOL.CHEM. V. 290 8694 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 25635048 JRNL DOI 10.1074/JBC.M114.628594 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MVN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000104101. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.2-0.8 MM [U-13C; U-15N] REMARK 210 EEF1BDELTA, 20 MM TRIS, 200 MM REMARK 210 SODIUM CHLORIDE, 0.01% DSS, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CA)CO; 3D HBHA(CO)NH; REMARK 210 3D HBHANH; 3D HCCH-TOCSY; 3D REMARK 210 CCH-TOCSY; 3D CCH-COSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, NMRPIPE, NMRVIEW, CYANA, REMARK 210 CNS REMARK 210 METHOD USED : MOLECULAR DYNAMICS SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 154 -82.25 64.52 REMARK 500 1 ASP A 163 -55.17 73.72 REMARK 500 1 ASN A 164 -35.99 73.65 REMARK 500 1 ALA A 191 -56.51 69.53 REMARK 500 2 PRO A 190 45.00 -70.49 REMARK 500 2 ALA A 191 76.74 -104.28 REMARK 500 3 ASN A 164 -34.95 81.76 REMARK 500 4 SER A 152 -20.84 76.53 REMARK 500 4 ASP A 163 -67.04 -145.60 REMARK 500 4 ASN A 164 -37.11 143.96 REMARK 500 4 PRO A 190 32.90 -71.65 REMARK 500 5 ASP A 156 -159.85 -169.58 REMARK 500 5 ILE A 157 -64.39 -124.82 REMARK 500 5 ASN A 164 -21.43 91.51 REMARK 500 6 PRO A 190 84.03 -69.21 REMARK 500 7 PRO A 150 41.45 -80.19 REMARK 500 8 ASP A 154 -90.43 50.74 REMARK 500 8 ASN A 164 -26.83 83.05 REMARK 500 8 LYS A 189 150.95 76.29 REMARK 500 8 PRO A 190 42.26 -78.53 REMARK 500 9 PRO A 150 98.19 -67.84 REMARK 500 9 ASP A 163 -52.82 -127.88 REMARK 500 9 ASN A 164 -29.23 88.68 REMARK 500 9 ALA A 191 -159.06 58.08 REMARK 500 10 GLU A 153 -8.63 -59.40 REMARK 500 11 SER A 152 34.51 -93.19 REMARK 500 11 ASP A 163 121.84 -174.98 REMARK 500 11 PRO A 190 92.49 -67.76 REMARK 500 12 ASP A 156 -91.24 -99.51 REMARK 500 12 ILE A 157 136.24 60.88 REMARK 500 12 ASP A 163 149.50 179.66 REMARK 500 13 SER A 152 21.42 -147.25 REMARK 500 13 ASP A 163 -60.85 -107.66 REMARK 500 13 ASN A 164 -43.08 144.30 REMARK 500 13 PRO A 190 86.76 -59.69 REMARK 500 14 ASP A 163 -57.65 -154.18 REMARK 500 14 ASN A 164 -42.31 80.36 REMARK 500 14 PRO A 190 -175.29 -69.24 REMARK 500 14 ALA A 191 -63.92 72.71 REMARK 500 15 ASP A 155 -40.14 -131.59 REMARK 500 15 PRO A 190 86.72 -68.28 REMARK 500 16 ASP A 156 -159.19 -159.47 REMARK 500 16 SER A 162 -73.08 61.72 REMARK 500 17 PRO A 150 107.93 -54.97 REMARK 500 17 PRO A 190 -177.80 -66.69 REMARK 500 18 PRO A 150 94.58 -69.38 REMARK 500 18 ILE A 157 -71.30 -73.90 REMARK 500 18 ASN A 164 -25.80 92.01 REMARK 500 19 ILE A 157 -61.43 -145.01 REMARK 500 19 ASP A 163 -37.86 74.46 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ARG A 175 0.08 SIDE CHAIN REMARK 500 19 ARG A 178 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25276 RELATED DB: BMRB REMARK 900 RELATED ID: 2MVM RELATED DB: PDB DBREF 2MVN A 153 192 UNP P29692 EF1D_HUMAN 153 192 SEQADV 2MVN GLY A 149 UNP P29692 EXPRESSION TAG SEQADV 2MVN PRO A 150 UNP P29692 EXPRESSION TAG SEQADV 2MVN GLY A 151 UNP P29692 EXPRESSION TAG SEQADV 2MVN SER A 152 UNP P29692 EXPRESSION TAG SEQRES 1 A 44 GLY PRO GLY SER GLU ASP ASP ASP ILE ASP LEU PHE GLY SEQRES 2 A 44 SER ASP ASN GLU GLU GLU ASP LYS GLU ALA ALA GLN LEU SEQRES 3 A 44 ARG GLU GLU ARG LEU ARG GLN TYR ALA GLU LYS LYS ALA SEQRES 4 A 44 LYS LYS PRO ALA LEU HELIX 1 1 GLU A 167 ALA A 187 1 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000