PDB Short entry for 2MVX HEADER PROTEIN FIBRIL 17-OCT-14 2MVX TITLE ATOMIC-RESOLUTION 3D STRUCTURE OF AMYLOID-BETA FIBRILS: THE OSAKA TITLE 2 MUTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J; COMPND 4 FRAGMENT: UNP RESIDUES 672-711; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: A4, AD1, APP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET T7 KEYWDS AMYLOID BETA, OSAKA MUTATION, AMYLOID FIBRILS, PROTEIN FIBRIL EXPDTA SOLID-STATE NMR NUMMDL 20 AUTHOR A.K.SCHUETZ,T.VAGT,M.HUBER,O.Y.OVCHINNIKOVA,R.CADALBERT,J.WALL, AUTHOR 2 P.GUENTERT,A.BOCKMANN,R.GLOCKSHUBER,B.H.MEIER REVDAT 2 21-JAN-15 2MVX 1 JRNL REVDAT 1 26-NOV-14 2MVX 0 JRNL AUTH A.K.SCHUTZ,T.VAGT,M.HUBER,O.Y.OVCHINNIKOVA,R.CADALBERT, JRNL AUTH 2 J.WALL,P.GUNTERT,A.BOCKMANN,R.GLOCKSHUBER,B.H.MEIER JRNL TITL ATOMIC-RESOLUTION THREE-DIMENSIONAL STRUCTURE OF AMYLOID JRNL TITL 2 BETA FIBRILS BEARING THE OSAKA MUTATION. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 54 331 2015 JRNL REFN ISSN 1433-7851 JRNL PMID 25395337 JRNL DOI 10.1002/ANIE.201408598 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MVX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-14. REMARK 100 THE RCSB ID CODE IS RCSB104110. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 15 MG/ML [U-100% 13C; U-100% REMARK 210 15N] AMYLOID BETA, 100% H2O; 15 REMARK 210 MG/ML [U-100% 13C] AMYLOID BETA, REMARK 210 100% H2O; 15 MG/ML [U-100% 13C]/ REMARK 210 [U-100% 15N] AMYLOID BETA, 100% REMARK 210 H2O; 15 MG/ML [U-100% 2-13C- REMARK 210 GLUCOSE; U-100% 15N] AMYLOID REMARK 210 BETA, 100% H2O; 15 MG/ML [U-100% REMARK 210 13C; U-100% 15N]/NATURAL REMARK 210 ABUNDANCE AMYLOID BETA, 100% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NCA; NCO; DARR 15 MS; PAIN 6 MS; REMARK 210 DARR 400 MS; PAR 8 MS; CHHC 500 REMARK 210 US; PDSD 4 S REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.9.6, CCPNMR 2.2.2, REMARK 210 TALOS+ 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 4 116.51 -168.76 REMARK 500 1 TYR A 10 114.75 -172.34 REMARK 500 1 ASP A 23 103.53 63.57 REMARK 500 1 SER A 26 125.10 -178.75 REMARK 500 1 LEU A 34 109.65 -171.73 REMARK 500 1 PHE B 4 116.86 -168.59 REMARK 500 1 TYR B 10 114.78 -172.51 REMARK 500 1 ASP B 23 104.10 62.84 REMARK 500 1 SER B 26 122.61 -178.58 REMARK 500 1 LEU B 34 108.44 -171.28 REMARK 500 1 PHE C 4 116.59 -169.42 REMARK 500 1 TYR C 10 115.00 -172.49 REMARK 500 1 ASP C 23 102.89 62.15 REMARK 500 1 SER C 26 122.48 -178.54 REMARK 500 1 LEU C 34 107.47 -169.76 REMARK 500 1 PHE D 4 116.23 -169.43 REMARK 500 1 TYR D 10 114.69 -172.56 REMARK 500 1 ASP D 23 102.56 61.73 REMARK 500 1 SER D 26 121.96 -178.81 REMARK 500 1 LEU D 34 106.80 -168.06 REMARK 500 1 PHE E 4 117.65 -168.67 REMARK 500 1 TYR E 10 113.37 -172.23 REMARK 500 1 ASP E 23 104.07 61.52 REMARK 500 1 SER E 26 121.74 -178.99 REMARK 500 1 LEU E 34 105.81 -164.82 REMARK 500 1 PHE F 4 115.58 -167.58 REMARK 500 1 TYR F 10 114.49 -172.32 REMARK 500 1 ASP F 23 102.53 63.18 REMARK 500 1 SER F 26 122.52 -179.56 REMARK 500 1 LEU F 34 113.01 -172.11 REMARK 500 1 PHE G 4 115.10 -168.29 REMARK 500 1 TYR G 10 114.40 -172.50 REMARK 500 1 ASP G 23 103.97 62.54 REMARK 500 1 SER G 26 121.28 -179.52 REMARK 500 1 LEU G 34 112.25 -171.19 REMARK 500 1 PHE H 4 114.88 -168.59 REMARK 500 1 TYR H 10 113.80 -172.36 REMARK 500 1 ASP H 23 103.08 62.10 REMARK 500 1 SER H 26 121.54 179.65 REMARK 500 1 LEU H 34 110.76 -170.74 REMARK 500 1 PHE I 4 115.13 -168.69 REMARK 500 1 TYR I 10 113.52 -172.42 REMARK 500 1 ASP I 23 103.41 61.83 REMARK 500 1 SER I 26 121.27 179.55 REMARK 500 1 LEU I 34 108.49 -168.58 REMARK 500 1 PHE J 4 115.59 -164.89 REMARK 500 1 TYR J 10 111.54 -171.70 REMARK 500 1 ASP J 23 104.18 61.84 REMARK 500 1 SER J 26 120.90 -179.81 REMARK 500 1 LEU J 34 106.82 -165.88 REMARK 500 REMARK 500 THIS ENTRY HAS 691 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25289 RELATED DB: BMRB DBREF 2MVX A 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 2MVX B 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 2MVX C 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 2MVX D 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 2MVX E 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 2MVX F 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 2MVX G 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 2MVX H 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 2MVX I 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 2MVX J 1 40 UNP P05067 A4_HUMAN 672 711 SEQADV 2MVX A UNP P05067 GLU 693 DELETION SEQADV 2MVX B UNP P05067 GLU 693 DELETION SEQADV 2MVX C UNP P05067 GLU 693 DELETION SEQADV 2MVX D UNP P05067 GLU 693 DELETION SEQADV 2MVX E UNP P05067 GLU 693 DELETION SEQADV 2MVX F UNP P05067 GLU 693 DELETION SEQADV 2MVX G UNP P05067 GLU 693 DELETION SEQADV 2MVX H UNP P05067 GLU 693 DELETION SEQADV 2MVX I UNP P05067 GLU 693 DELETION SEQADV 2MVX J UNP P05067 GLU 693 DELETION SEQRES 1 A 39 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 A 39 HIS GLN LYS LEU VAL PHE PHE ALA ASP VAL GLY SER ASN SEQRES 3 A 39 LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL VAL SEQRES 1 B 39 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 B 39 HIS GLN LYS LEU VAL PHE PHE ALA ASP VAL GLY SER ASN SEQRES 3 B 39 LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL VAL SEQRES 1 C 39 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 C 39 HIS GLN LYS LEU VAL PHE PHE ALA ASP VAL GLY SER ASN SEQRES 3 C 39 LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL VAL SEQRES 1 D 39 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 D 39 HIS GLN LYS LEU VAL PHE PHE ALA ASP VAL GLY SER ASN SEQRES 3 D 39 LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL VAL SEQRES 1 E 39 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 E 39 HIS GLN LYS LEU VAL PHE PHE ALA ASP VAL GLY SER ASN SEQRES 3 E 39 LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL VAL SEQRES 1 F 39 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 F 39 HIS GLN LYS LEU VAL PHE PHE ALA ASP VAL GLY SER ASN SEQRES 3 F 39 LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL VAL SEQRES 1 G 39 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 G 39 HIS GLN LYS LEU VAL PHE PHE ALA ASP VAL GLY SER ASN SEQRES 3 G 39 LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL VAL SEQRES 1 H 39 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 H 39 HIS GLN LYS LEU VAL PHE PHE ALA ASP VAL GLY SER ASN SEQRES 3 H 39 LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL VAL SEQRES 1 I 39 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 I 39 HIS GLN LYS LEU VAL PHE PHE ALA ASP VAL GLY SER ASN SEQRES 3 I 39 LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL VAL SEQRES 1 J 39 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 J 39 HIS GLN LYS LEU VAL PHE PHE ALA ASP VAL GLY SER ASN SEQRES 3 J 39 LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL VAL SHEET 1 A 5 ARG A 5 ASP A 7 0 SHEET 2 A 5 ARG B 5 ASP B 7 1 O ARG B 5 N HIS A 6 SHEET 3 A 5 ARG C 5 ASP C 7 1 O ARG C 5 N HIS B 6 SHEET 4 A 5 ARG D 5 ASP D 7 1 O ARG D 5 N HIS C 6 SHEET 5 A 5 ARG E 5 ASP E 7 1 O ARG E 5 N HIS D 6 SHEET 1 B 5 GLU A 11 PHE A 19 0 SHEET 2 B 5 GLU B 11 PHE B 19 1 O VAL B 12 N HIS A 13 SHEET 3 B 5 GLU C 11 PHE C 19 1 O VAL C 12 N HIS B 13 SHEET 4 B 5 GLU D 11 PHE D 19 1 O VAL D 12 N HIS C 13 SHEET 5 B 5 GLU E 11 PHE E 19 1 O VAL E 12 N HIS D 13 SHEET 1 E 5 ARG F 5 ASP F 7 0 SHEET 2 E 5 ARG G 5 ASP G 7 1 O ARG G 5 N HIS F 6 SHEET 3 E 5 ARG H 5 ASP H 7 1 O ARG H 5 N HIS G 6 SHEET 4 E 5 ARG I 5 ASP I 7 1 O ASP I 7 N HIS H 6 SHEET 5 E 5 ARG J 5 ASP J 7 1 O ASP J 7 N HIS I 6 SHEET 1 F 5 GLU F 11 PHE F 19 0 SHEET 2 F 5 GLU G 11 PHE G 19 1 O VAL G 12 N HIS F 13 SHEET 3 F 5 GLU H 11 PHE H 19 1 O VAL H 12 N HIS G 13 SHEET 4 F 5 GLU I 11 PHE I 19 1 O VAL I 12 N HIS H 13 SHEET 5 F 5 GLU J 11 PHE J 19 1 O VAL J 12 N HIS I 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000