PDB Short entry for 2MW3 HEADER UNKNOWN FUNCTION 24-OCT-14 2MW3 TITLE SOLUTION NMR STRUCTURE OF THE LASSO PEPTIDE STREPTOMONOMICIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LASSO PEPTIDE; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMONOSPORA ALBA; SOURCE 3 ORGANISM_TAXID: 183763 KEYWDS LASSO PEPTIDE, ANTIBIOTIC, MACROCYCLE, RIPP, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR J.I.TIETZ,L.ZHU,D.A.MITCHELL,M.METELEV,J.O.MELBY,P.M.BLAIR,I.LIVNAT, AUTHOR 2 K.SEVERINOV REVDAT 4 14-JUN-23 2MW3 1 REMARK LINK REVDAT 3 04-MAR-15 2MW3 1 JRNL REVDAT 2 11-FEB-15 2MW3 1 JRNL REVDAT 1 28-JAN-15 2MW3 0 JRNL AUTH M.METELEV,J.I.TIETZ,J.O.MELBY,P.M.BLAIR,L.ZHU,I.LIVNAT, JRNL AUTH 2 K.SEVERINOV,D.A.MITCHELL JRNL TITL STRUCTURE, BIOACTIVITY, AND RESISTANCE MECHANISM OF JRNL TITL 2 STREPTOMONOMICIN, AN UNUSUAL LASSO PEPTIDE FROM AN JRNL TITL 3 UNDERSTUDIED HALOPHILIC ACTINOMYCETE. JRNL REF CHEM.BIOL. V. 22 241 2015 JRNL REFN ISSN 1074-5521 JRNL PMID 25601074 JRNL DOI 10.1016/J.CHEMBIOL.2014.11.017 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.36, X-PLOR NIH 2.36 REMARK 3 AUTHORS : C.D. SCHWIETERS, J.J. KUSZEWSKI, N. TJANDRA AND REMARK 3 G.M. CLORE (X-PLOR NIH), C.D. SCHWIETERS, J.J. REMARK 3 KUSZEWSKI, N. TJANDRA AND G.M. CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MW3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000104116. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 4 MM STREPTOMONOMICIN, 100% REMARK 210 METHANOL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D DQF-COSY; 2D 1H-1H NOESY; 2D REMARK 210 1H-1H TOCSY; 2D 1H-13C HSQC; 2D REMARK 210 1H-13C HMBC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.115, NMRPIPE 8.2, VNMRJ REMARK 210 3.2A, MESTRENOVA 8.1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 7 H ALA A 15 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 81.58 37.24 REMARK 500 1 ASP A 9 -93.90 -91.10 REMARK 500 1 LEU A 16 46.37 -103.17 REMARK 500 2 LEU A 2 79.14 38.07 REMARK 500 2 ASP A 9 -93.44 -88.48 REMARK 500 2 LEU A 16 59.00 -103.55 REMARK 500 2 TYR A 20 76.54 50.79 REMARK 500 3 LEU A 2 77.90 38.85 REMARK 500 3 ASP A 9 -96.85 -88.03 REMARK 500 3 PRO A 14 139.85 -36.02 REMARK 500 3 LEU A 16 51.17 -111.57 REMARK 500 3 VAL A 18 -148.01 -77.48 REMARK 500 4 LEU A 2 79.50 38.19 REMARK 500 4 SER A 5 130.55 -39.84 REMARK 500 4 ASP A 9 -97.95 -91.22 REMARK 500 4 LEU A 16 41.71 -103.02 REMARK 500 4 VAL A 18 -94.44 -124.70 REMARK 500 4 ILE A 19 -36.41 -136.16 REMARK 500 5 ASP A 9 -94.54 -89.65 REMARK 500 5 LEU A 16 62.12 -115.24 REMARK 500 6 ASP A 9 -81.90 -88.42 REMARK 500 6 ILE A 10 -36.60 -148.46 REMARK 500 6 LEU A 16 67.16 -118.64 REMARK 500 7 LEU A 2 79.27 39.67 REMARK 500 7 ASP A 9 -92.01 -88.55 REMARK 500 7 PRO A 14 132.53 -36.76 REMARK 500 7 VAL A 18 -90.59 -140.12 REMARK 500 8 ASP A 9 -92.40 -88.13 REMARK 500 8 ILE A 10 -39.47 -134.67 REMARK 500 8 LEU A 16 35.86 -96.57 REMARK 500 8 VAL A 18 -80.99 -146.83 REMARK 500 9 LEU A 2 78.73 37.47 REMARK 500 9 ASP A 9 -99.03 -87.82 REMARK 500 9 PRO A 14 141.49 -37.23 REMARK 500 9 LEU A 16 51.93 -110.50 REMARK 500 10 LEU A 2 72.14 38.04 REMARK 500 10 ASP A 9 -96.88 -87.69 REMARK 500 10 LEU A 16 50.20 -109.63 REMARK 500 10 ILE A 17 45.96 -89.36 REMARK 500 11 LEU A 2 78.03 39.60 REMARK 500 11 ASP A 9 -92.64 -88.16 REMARK 500 11 LEU A 16 43.59 -100.58 REMARK 500 12 LEU A 2 79.74 35.75 REMARK 500 12 ASP A 9 -84.46 -88.00 REMARK 500 12 ILE A 10 -23.03 -143.69 REMARK 500 12 LEU A 16 47.15 -107.76 REMARK 500 12 VAL A 18 -126.52 -69.80 REMARK 500 12 TYR A 20 150.91 -43.21 REMARK 500 13 LEU A 2 79.20 37.93 REMARK 500 13 ASP A 9 -91.97 -88.06 REMARK 500 REMARK 500 THIS ENTRY HAS 61 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25297 RELATED DB: BMRB DBREF 2MW3 A 1 21 PDB 2MW3 2MW3 1 21 SEQRES 1 A 21 SER LEU GLY SER SER PRO TYR ASN ASP ILE LEU GLY TYR SEQRES 2 A 21 PRO ALA LEU ILE VAL ILE TYR PRO LINK N SER A 1 CG ASP A 9 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000