PDB Short entry for 2MX7 HEADER PROTEIN BINDING 16-DEC-14 2MX7 TITLE SOLUTION STRUCTURE OF THE INTERNAL EH DOMAIN OF GAMMA-SYNERGIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNERGIN GAMMA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: INTERNAL EH DOMAIN (UNP RESIDUES 279-388); COMPND 5 SYNONYM: AP1 SUBUNIT GAMMA-BINDING PROTEIN 1, GAMMA-SYNERGIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SYNRG, AP1GBP1, SYNG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EH DOMAIN, EF HAND, NPF REPEAT, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.KOVERMANN,U.WEININGER,C.LOEW REVDAT 1 30-DEC-15 2MX7 0 JRNL AUTH M.KOVERMANN,U.WEININGER,C.LOEW JRNL TITL SOLUTION STRUCTURE OF THE INTERNAL EH DOMAIN OF JRNL TITL 2 GAMMA-SYNERGIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MX7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-14. REMARK 100 THE RCSB ID CODE IS RCSB104156. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 20 MM TRIS, 100 MM REMARK 210 SODIUM CHLORIDE, 2 MM CALCIUM REMARK 210 CHLORIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CACB; 3D HCCH-TOCSY; 2D 1H- REMARK 210 15N HSQC IPAP REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD23 LEU A 355 HG22 VAL A 358 1.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 284 31.78 -77.92 REMARK 500 1 ALA A 285 -42.05 -153.45 REMARK 500 1 ASN A 295 94.35 -68.57 REMARK 500 1 THR A 309 -75.80 -64.31 REMARK 500 1 LEU A 341 33.43 -86.39 REMARK 500 1 ASN A 343 -100.39 49.59 REMARK 500 2 ALA A 285 -41.63 -151.18 REMARK 500 2 TYR A 294 32.72 -89.61 REMARK 500 2 THR A 309 -75.36 -66.62 REMARK 500 2 ALA A 342 20.38 -77.99 REMARK 500 2 ASN A 343 -64.51 68.04 REMARK 500 2 PRO A 347 47.56 -73.94 REMARK 500 2 LEU A 350 109.74 -59.22 REMARK 500 3 GLN A 282 -68.28 69.17 REMARK 500 3 ALA A 285 13.27 -141.26 REMARK 500 3 ARG A 288 -27.44 -145.00 REMARK 500 3 TYR A 294 33.56 -96.51 REMARK 500 3 THR A 309 -74.52 -66.31 REMARK 500 3 PRO A 347 42.97 -77.94 REMARK 500 3 LEU A 350 79.05 49.89 REMARK 500 4 ALA A 285 -23.22 -174.28 REMARK 500 4 MET A 289 109.05 -58.23 REMARK 500 4 LEU A 298 -77.34 62.67 REMARK 500 4 THR A 309 -75.03 -66.11 REMARK 500 4 THR A 345 62.59 -150.47 REMARK 500 4 PRO A 347 40.08 -82.74 REMARK 500 4 LEU A 350 81.06 58.19 REMARK 500 5 GLN A 282 -61.31 70.27 REMARK 500 5 ARG A 288 -158.68 -117.06 REMARK 500 5 TYR A 294 32.75 -92.82 REMARK 500 5 THR A 309 -75.29 -65.97 REMARK 500 5 LEU A 350 103.94 67.56 REMARK 500 6 LEU A 298 -156.28 65.40 REMARK 500 6 THR A 309 -75.39 -65.51 REMARK 500 6 THR A 345 95.24 -66.62 REMARK 500 6 PRO A 347 116.45 -38.25 REMARK 500 7 ALA A 285 29.04 -156.24 REMARK 500 7 ARG A 288 148.31 69.13 REMARK 500 7 THR A 309 -74.96 -63.27 REMARK 500 7 ASN A 343 -60.28 -133.97 REMARK 500 7 THR A 346 -58.64 -122.86 REMARK 500 7 LEU A 350 72.43 59.70 REMARK 500 8 ALA A 285 14.80 -142.59 REMARK 500 8 LEU A 298 -73.91 64.53 REMARK 500 8 THR A 309 -73.30 -65.21 REMARK 500 8 THR A 345 64.47 -107.25 REMARK 500 8 PRO A 347 87.47 -69.26 REMARK 500 9 GLN A 282 -58.51 74.82 REMARK 500 9 ALA A 285 17.50 -150.10 REMARK 500 9 THR A 309 -75.52 -62.81 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25395 RELATED DB: BMRB DBREF 2MX7 A 279 388 UNP Q9UMZ2 SYNRG_HUMAN 279 388 SEQADV 2MX7 SER A 277 UNP Q9UMZ2 EXPRESSION TAG SEQADV 2MX7 MET A 278 UNP Q9UMZ2 EXPRESSION TAG SEQRES 1 A 112 SER MET PHE PRO SER GLN ASP PRO ALA GLN PRO ARG MET SEQRES 2 A 112 PRO PRO TRP ILE TYR ASN GLU SER LEU VAL PRO ASP ALA SEQRES 3 A 112 TYR LYS LYS ILE LEU GLU THR THR MET THR PRO THR GLY SEQRES 4 A 112 ILE ASP THR ALA LYS LEU TYR PRO ILE LEU MET SER SER SEQRES 5 A 112 GLY LEU PRO ARG GLU THR LEU GLY GLN ILE TRP ALA LEU SEQRES 6 A 112 ALA ASN ARG THR THR PRO GLY LYS LEU THR LYS GLU GLU SEQRES 7 A 112 LEU TYR THR VAL LEU ALA MET ILE ALA VAL THR GLN ARG SEQRES 8 A 112 GLY VAL PRO ALA MET SER PRO ASP ALA LEU ASN GLN PHE SEQRES 9 A 112 PRO ALA ALA PRO ILE PRO THR LEU HELIX 1 1 PRO A 290 ASN A 295 1 6 HELIX 2 2 PRO A 300 THR A 310 1 11 HELIX 3 3 ASP A 317 SER A 328 1 12 HELIX 4 4 PRO A 331 LEU A 341 1 11 HELIX 5 5 THR A 351 ARG A 367 1 17 HELIX 6 6 SER A 373 GLN A 379 1 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000