PDB Short entry for 2MYM HEADER PROTEIN BINDING 27-JAN-15 2MYM TITLE CULLIN3 - BTB INTERFACE: A NOVEL TARGET FOR STAPLED PEPTIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CULLIN-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 49-68; COMPND 5 SYNONYM: CUL-3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HUMAN; SOURCE 4 ORGANISM_COMMON: HOMO SAPIENS; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 OTHER_DETAILS: PEPTIDE WAS OBTAINED ON SOLID PHASE BY FMOC STRATEGY KEYWDS PROTEIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 MDLTYP MINIMIZED AVERAGE AUTHOR L.RUSSO,M.PALMIERI,G.MALGIERI REVDAT 2 15-NOV-23 2MYM 1 SEQADV LINK ATOM REVDAT 1 22-APR-15 2MYM 0 JRNL AUTH I.DE PAOLA,L.PIRONE,M.PALMIERI,N.BALASCO,L.ESPOSITO,L.RUSSO, JRNL AUTH 2 D.MAZZA,L.DI MARCOTULLIO,S.DI GAETANO,G.MALGIERI, JRNL AUTH 3 L.VITAGLIANO,E.PEDONE,L.ZACCARO JRNL TITL CULLIN3 - BTB INTERFACE: A NOVEL TARGET FOR STAPLED JRNL TITL 2 PEPTIDES. JRNL REF PLOS ONE V. 10 21149 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 25848797 JRNL DOI 10.1371/JOURNAL.PONE.0121149 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000104202. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM CUL349-68LA, REMARK 210 TRIFLUOROETHANOL/WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 15 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -42.58 -159.00 REMARK 500 1 LEU A 4 -49.60 -177.76 REMARK 500 2 LEU A 4 -34.97 -179.21 REMARK 500 3 SER A 2 -69.41 -104.59 REMARK 500 3 LEU A 4 25.83 -162.13 REMARK 500 4 SER A 2 -63.29 -98.83 REMARK 500 4 LEU A 4 -49.73 -177.99 REMARK 500 4 ASN A 12 26.71 -140.84 REMARK 500 4 MK8 A 13 -52.44 -156.74 REMARK 500 5 ASN A 12 26.70 -140.80 REMARK 500 5 MK8 A 13 -52.51 -156.70 REMARK 500 6 SER A 2 -46.40 -148.62 REMARK 500 6 ASN A 12 26.68 -140.90 REMARK 500 6 MK8 A 13 -52.49 -156.70 REMARK 500 7 SER A 2 -60.24 -146.30 REMARK 500 7 ASN A 12 26.67 -140.82 REMARK 500 7 MK8 A 13 -52.42 -156.72 REMARK 500 8 ASN A 12 26.71 -140.88 REMARK 500 8 MK8 A 13 -52.43 -156.70 REMARK 500 9 ASN A 12 26.71 -141.07 REMARK 500 9 MK8 A 13 -52.49 -156.72 REMARK 500 10 LEU A 4 -45.94 -178.13 REMARK 500 10 ASN A 12 26.68 -140.81 REMARK 500 10 MK8 A 13 -52.46 -156.72 REMARK 500 11 SER A 2 -66.05 -133.13 REMARK 500 11 LEU A 4 26.28 -162.96 REMARK 500 11 ASN A 12 26.60 -140.85 REMARK 500 11 MK8 A 13 -52.40 -156.66 REMARK 500 12 SER A 2 -47.30 -131.48 REMARK 500 12 ASN A 12 26.88 -141.38 REMARK 500 12 MK8 A 13 -52.45 -156.85 REMARK 500 13 ASN A 12 26.89 -141.44 REMARK 500 13 MK8 A 13 -52.45 -156.91 REMARK 500 18 LEU A 4 -45.96 -177.90 REMARK 500 19 SER A 2 -59.98 -147.95 REMARK 500 19 LEU A 4 26.66 -163.68 REMARK 500 20 ASN A 12 26.81 -141.40 REMARK 500 20 MK8 A 13 -52.45 -156.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25457 RELATED DB: BMRB REMARK 900 RELATED ID: 2MYL RELATED DB: PDB DBREF 2MYM A 1 20 UNP Q13618 CUL3_HUMAN 49 68 SEQADV 2MYM MK8 A 13 UNP Q13618 ALA 61 CONFLICT SEQRES 1 A 20 ASN SER GLY LEU SER PHE GLU GLU MK8 TYR ARG ASN MK8 SEQRES 2 A 20 TYR THR MET VAL LEU HIS LYS MODRES 2MYM MK8 A 9 LEU 2-METHYL-L-NORLEUCINE MODRES 2MYM MK8 A 13 LEU 2-METHYL-L-NORLEUCINE HET MK8 A 9 20 HET MK8 A 13 20 HETNAM MK8 2-METHYL-L-NORLEUCINE FORMUL 1 MK8 2(C7 H15 N O2) HELIX 1 1 LEU A 4 TYR A 10 1 7 HELIX 2 2 MK8 A 13 LYS A 20 1 8 LINK C GLU A 8 N MK8 A 9 1555 1555 1.33 LINK C MK8 A 9 N TYR A 10 1555 1555 1.33 LINK CE MK8 A 9 CE MK8 A 13 1555 1555 1.95 LINK C ASN A 12 N MK8 A 13 1555 1555 1.33 LINK C MK8 A 13 N TYR A 14 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000