PDB Short entry for 2N0K HEADER METAL BINDING PROTEIN 09-MAR-15 2N0K TITLE CHEMICAL SHIFT ASSIGNMENTS AND STRUCTURE OF THE ALPHA-CRYSTALLIN TITLE 2 DOMAIN FROM HUMAN, HSPB5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-CRYSTALLIN B CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 64-152; COMPND 5 SYNONYM: ALPHA(B)-CRYSTALLIN, HEAT SHOCK PROTEIN BETA-5, HSPB5, RENAL COMPND 6 CARCINOMA ANTIGEN NY-REN-27, ROSENTHAL FIBER COMPONENT; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CRYA2, CRYAB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET24A KEYWDS CRYSTALLIN, HUMAN, ACD, PROTEIN, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 9 AUTHOR P.RAJAGOPAL,R.E.KLEVIT,L.SHI,D.BAKER REVDAT 4 14-JUN-23 2N0K 1 REMARK SEQADV SHEET REVDAT 3 15-FEB-17 2N0K 1 JRNL REVDAT 2 22-JUL-15 2N0K 1 JRNL REVDAT 1 03-JUN-15 2N0K 0 JRNL AUTH P.RAJAGOPAL,E.TSE,A.J.BORST,S.P.DELBECQ,L.SHI, JRNL AUTH 2 D.R.SOUTHWORTH,R.E.KLEVIT JRNL TITL A CONSERVED HISTIDINE MODULATES HSPB5 STRUCTURE TO TRIGGER JRNL TITL 2 CHAPERONE ACTIVITY IN RESPONSE TO STRESS-RELATED ACIDOSIS. JRNL REF ELIFE V. 4 2015 JRNL REFN ESSN 2050-084X JRNL PMID 25962097 JRNL DOI 10.7554/ELIFE.07304 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.JEHLE,B.VAN ROSSUM,J.R.STOUT,S.M.NOGUCHI,K.FALBER, REMARK 1 AUTH 2 K.REHBEIN,H.OSCHKINAT,R.E.KLEVIT,P.RAJAGOPAL REMARK 1 TITL ALPHAB-CRYSTALLIN: A HYBRID SOLID-STATE/SOLUTION-STATE NMR REMARK 1 TITL 2 INVESTIGATION REVEALS STRUCTURAL ASPECTS OF THE REMARK 1 TITL 3 HETEROGENEOUS OLIGOMER. REMARK 1 REF J.MOL.BIOL. V. 385 1481 2009 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 19041879 REMARK 1 DOI 10.1016/J.JMB.2008.10.097 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.JEHLE,P.RAJAGOPAL,B.BARDIAUX,S.MARKOVIC,R.KUHNE,J.R.STOUT, REMARK 1 AUTH 2 V.A.HIGMAN,R.E.KLEVIT,B.J.VAN ROSSUM,H.OSCHKINAT REMARK 1 TITL SOLID-STATE NMR AND SAXS STUDIES PROVIDE A STRUCTURAL BASIS REMARK 1 TITL 2 FOR THE ACTIVATION OF ALPHAB-CRYSTALLIN OLIGOMERS. REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 17 1037 2010 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 20802487 REMARK 1 DOI 10.1038/NSMB.1891 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.JEHLE,B.S.VOLLMAR,B.BARDIAUX,K.K.DOVE,P.RAJAGOPAL,T.GONEN, REMARK 1 AUTH 2 H.OSCHKINAT,R.E.KLEVIT REMARK 1 TITL N-TERMINAL DOMAIN OF ALPHAB-CRYSTALLIN PROVIDES A REMARK 1 TITL 2 CONFORMATIONAL SWITCH FOR MULTIMERIZATION AND STRUCTURAL REMARK 1 TITL 3 HETEROGENEITY. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 108 6409 2011 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 21464278 REMARK 1 DOI 10.1073/PNAS.1014656108 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, TALOS, ROSETTAOLIGOMER REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), CORNILESCU, DELAGLIO AND BAX (TALOS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000104269. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295; 295 REMARK 210 PH : 7.5; 6.5 REMARK 210 IONIC STRENGTH : 100; 100 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 HSPB5-ACD, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, .1 MM EDTA, 1 MM PMSF, REMARK 210 90% H2O/10% D2O; 0.6 MM [U-100% REMARK 210 13C; U-100% 15N; U-80% 2H] HSPB5- REMARK 210 ACD, 50 MM SODIUM PHOSPHATE, 100 REMARK 210 MM SODIUM CHLORIDE, .1 MM EDTA, REMARK 210 1 MM PMSF, 90% H2O/10% D2O; 0.6 REMARK 210 MM [U-100% 13C; U-100% 15N; U-80% REMARK 210 2H] HSPB5-ACD, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, .1 MM EDTA, 1 MM PMSF, REMARK 210 14 MG/ML PF1 PHAGE, 90% H2O/10% REMARK 210 D2O; 1.0 MM [U-100% 13C; U-100% REMARK 210 15N] HSPB5-ACD, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, .1 MM EDTA, 1 MM PMSF, REMARK 210 100% D2O; 1.0 MM [U-100% 13C; U- REMARK 210 100% 15N; 50% 2H] HSPB5-ACD, 50 REMARK 210 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, .1 MM EDTA, 1 REMARK 210 MM PMSF, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HNCO; 3D HN(CO)CA; REMARK 210 3D HN(COCA)CB; 3D HCCH-TOCSY; REMARK 210 3D H(CCO)NH; 3D C(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, AUTOASSIGN, CS REMARK 210 -ROSETTA, ROSETTAOLIGOMER, TALOS, REMARK 210 GUARDD REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 9 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SOLUTION STRUCTURE WAS DETERMINED WITH NOES AND RDCS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS B 104 HH11 ARG B 107 1.21 REMARK 500 HD1 HIS A 104 HH11 ARG A 107 1.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 66 27.22 -141.58 REMARK 500 1 GLU A 71 -179.25 -68.99 REMARK 500 1 LYS A 72 -59.97 -29.53 REMARK 500 1 ASP A 73 46.41 -146.45 REMARK 500 1 HIS A 101 75.66 -60.78 REMARK 500 1 ASP A 109 -147.75 -154.61 REMARK 500 1 SER B 66 27.25 -141.61 REMARK 500 1 GLU B 71 -179.37 -69.06 REMARK 500 1 LYS B 72 -60.02 -29.29 REMARK 500 1 ASP B 73 46.49 -146.53 REMARK 500 1 HIS B 101 75.53 -60.67 REMARK 500 1 ASP B 109 -147.61 -154.50 REMARK 500 2 MET A 68 119.52 -37.57 REMARK 500 2 LYS A 72 -70.44 -13.40 REMARK 500 2 ASP A 73 44.42 -143.05 REMARK 500 2 ARG A 74 135.76 -170.82 REMARK 500 2 HIS A 83 34.26 72.21 REMARK 500 2 LEU A 94 68.64 -105.94 REMARK 500 2 LYS A 103 120.18 -170.58 REMARK 500 2 ASP A 109 -157.87 -133.81 REMARK 500 2 SER A 136 146.95 -171.67 REMARK 500 2 MET B 68 119.48 -37.57 REMARK 500 2 LYS B 72 -70.43 -13.60 REMARK 500 2 ASP B 73 44.40 -142.83 REMARK 500 2 ARG B 74 135.59 -170.88 REMARK 500 2 HIS B 83 34.24 72.25 REMARK 500 2 LEU B 94 68.63 -105.97 REMARK 500 2 LYS B 103 120.19 -170.53 REMARK 500 2 ASP B 109 -157.89 -133.85 REMARK 500 2 SER B 136 146.98 -171.65 REMARK 500 3 GLU A 71 -149.85 -114.56 REMARK 500 3 ASP A 73 33.79 -151.89 REMARK 500 3 PHE A 75 119.69 -163.88 REMARK 500 3 VAL A 81 34.30 -147.55 REMARK 500 3 HIS A 101 64.58 -102.83 REMARK 500 3 ASP A 109 -147.73 -116.54 REMARK 500 3 ARG A 116 75.77 -108.72 REMARK 500 3 LYS A 121 76.87 -67.12 REMARK 500 3 ARG A 149 171.64 -59.40 REMARK 500 3 GLU B 71 -149.79 -114.70 REMARK 500 3 ASP B 73 33.76 -151.89 REMARK 500 3 PHE B 75 119.82 -163.79 REMARK 500 3 VAL B 81 34.17 -147.55 REMARK 500 3 HIS B 101 64.60 -102.86 REMARK 500 3 ASP B 109 -147.77 -116.51 REMARK 500 3 ARG B 116 75.72 -108.64 REMARK 500 3 LYS B 121 76.81 -67.26 REMARK 500 3 ARG B 149 171.61 -59.47 REMARK 500 4 LYS A 72 -61.66 -27.26 REMARK 500 4 ASP A 73 44.59 -144.55 REMARK 500 REMARK 500 THIS ENTRY HAS 127 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25527 RELATED DB: BMRB REMARK 900 NMR DISTANCE, DIHEDRAL, AND RESIDUAL DIPOLAR COUPLING CONSTRAINTS. DBREF 2N0K A 64 152 UNP P02511 CRYAB_HUMAN 64 152 DBREF 2N0K B 64 152 UNP P02511 CRYAB_HUMAN 64 152 SEQADV 2N0K ASP A 146 UNP P02511 ASN 146 ENGINEERED MUTATION SEQADV 2N0K ASP B 146 UNP P02511 ASN 146 ENGINEERED MUTATION SEQRES 1 A 89 GLY LEU SER GLU MET ARG LEU GLU LYS ASP ARG PHE SER SEQRES 2 A 89 VAL ASN LEU ASP VAL LYS HIS PHE SER PRO GLU GLU LEU SEQRES 3 A 89 LYS VAL LYS VAL LEU GLY ASP VAL ILE GLU VAL HIS GLY SEQRES 4 A 89 LYS HIS GLU GLU ARG GLN ASP GLU HIS GLY PHE ILE SER SEQRES 5 A 89 ARG GLU PHE HIS ARG LYS TYR ARG ILE PRO ALA ASP VAL SEQRES 6 A 89 ASP PRO LEU THR ILE THR SER SER LEU SER SER ASP GLY SEQRES 7 A 89 VAL LEU THR VAL ASP GLY PRO ARG LYS GLN VAL SEQRES 1 B 89 GLY LEU SER GLU MET ARG LEU GLU LYS ASP ARG PHE SER SEQRES 2 B 89 VAL ASN LEU ASP VAL LYS HIS PHE SER PRO GLU GLU LEU SEQRES 3 B 89 LYS VAL LYS VAL LEU GLY ASP VAL ILE GLU VAL HIS GLY SEQRES 4 B 89 LYS HIS GLU GLU ARG GLN ASP GLU HIS GLY PHE ILE SER SEQRES 5 B 89 ARG GLU PHE HIS ARG LYS TYR ARG ILE PRO ALA ASP VAL SEQRES 6 B 89 ASP PRO LEU THR ILE THR SER SER LEU SER SER ASP GLY SEQRES 7 B 89 VAL LEU THR VAL ASP GLY PRO ARG LYS GLN VAL HELIX 1 1 ASP A 129 ILE A 133 5 5 HELIX 2 2 ASP B 129 ILE B 133 5 5 SHEET 1 A 6 PHE A 75 LEU A 79 0 SHEET 2 A 6 VAL A 142 ASP A 146 -1 SHEET 3 A 6 THR A 134 LEU A 137 -1 SHEET 4 A 6 LEU A 89 LEU A 94 0 SHEET 5 A 6 VAL A 97 HIS A 104 -1 SHEET 6 A 6 GLY A 112 ARG A 123 -1 SHEET 1 B 6 GLY B 112 ARG B 123 0 SHEET 2 B 6 VAL B 97 HIS B 104 -1 SHEET 3 B 6 LEU B 89 LEU B 94 -1 SHEET 4 B 6 PHE B 75 LEU B 79 0 SHEET 5 B 6 VAL B 142 ASP B 146 -1 SHEET 6 B 6 THR B 134 LEU B 137 -1 CISPEP 1 GLY A 112 PHE A 113 5 9.52 CISPEP 2 GLY B 112 PHE B 113 5 9.62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000