PDB Short entry for 2N2C
HEADER    DNA BINDING PROTEIN                     06-MAY-15   2N2C              
TITLE     NMR STRUCTURE OF TDP-43 PRION-LIKE HYDROPHOBIC HELIX IN DPC           
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: TAR DNA-BINDING PROTEIN 43;                                
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: UNP RESIDUES 307-349;                                      
COMPND   5 SYNONYM: TDP-43;                                                     
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: TARDBP, TDP43;                                                 
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;                            
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 511693;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21;                                      
SOURCE   9 EXPRESSION_SYSTEM_VECTOR: PET28A                                     
KEYWDS    ALS, PRION-LIKE DOMAIN, HYDROPHOBIC HELICES, MEMBRANE INTERACTION,    
KEYWDS   2 DPC, TAR DNA-BINDING PROTEIN-43, DNA BINDING PROTEIN                 
EXPDTA    SOLUTION NMR                                                          
NUMMDL    6                                                                     
AUTHOR    L.LIM,J.SONG                                                          
REVDAT   1   02-DEC-15 2N2C    0                                                
JRNL        AUTH   L.LIM,J.SONG                                                 
JRNL        TITL   ALS-CAUSING MUTATIONS SIGNIFICANTLY PERTURB THE              
JRNL        TITL 2 SELF-ASSEMBLY AND INTERACTION WITH NUCLEIC ACID OF THE       
JRNL        TITL 3 INTRINSICALLY-DISORDERED PRION-LIKE DOMAIN OF TDP-43         
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : AMBER                                                
REMARK   3   AUTHORS     : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG,       
REMARK   3                 DUKE, LUO, ... AND KOLLMAN                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2N2C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAY-15.                  
REMARK 100 THE RCSB ID CODE IS RCSB104333.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 313                                
REMARK 210  PH                             : 4                                  
REMARK 210  IONIC STRENGTH                 : 1                                  
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 300 UM [U-100% 15N] ENTITY-1, 60   
REMARK 210                                   MM DPC-2, 90% H2O/10% D2O          
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D 1H-15N NOESY; 3D 1H-15N         
REMARK 210                                   TOCSY; 3D H(CCO)NH; 3D HCCH-       
REMARK 210                                   TOCSY; 3D HNCACB                   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : CYANA 2.1                          
REMARK 210   METHOD USED                   : MOLECULAR DYNAMICS                 
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 50                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 6                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST ENERGY  
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 MET A 311       12.14     47.79                                   
REMARK 500  1 PHE A 316      -57.56   -138.14                                   
REMARK 500  1 ILE A 318      -55.16   -141.82                                   
REMARK 500  1 ALA A 321      -34.94     58.54                                   
REMARK 500  1 GLN A 346       32.50   -142.97                                   
REMARK 500  2 PHE A 313      -41.94   -167.51                                   
REMARK 500  2 PHE A 316      -44.76   -151.53                                   
REMARK 500  2 SER A 317       16.06    -67.60                                   
REMARK 500  2 ILE A 318      -48.24   -147.36                                   
REMARK 500  2 ALA A 321      -30.69     57.18                                   
REMARK 500  2 GLN A 346       44.85   -144.27                                   
REMARK 500  3 MET A 311        6.63     51.44                                   
REMARK 500  3 ASN A 312      -93.70    -76.35                                   
REMARK 500  3 PHE A 316      -50.64   -150.56                                   
REMARK 500  3 SER A 317       31.43    -74.40                                   
REMARK 500  3 ILE A 318      -45.00   -152.02                                   
REMARK 500  3 ALA A 321      -34.87     58.11                                   
REMARK 500  3 GLN A 344      -34.43   -144.98                                   
REMARK 500  3 GLN A 346       53.41   -145.37                                   
REMARK 500  4 MET A 311      -14.31     54.84                                   
REMARK 500  4 ASN A 312        6.34    -62.04                                   
REMARK 500  4 PHE A 313      -19.35   -164.06                                   
REMARK 500  4 PHE A 316      -44.54   -152.27                                   
REMARK 500  4 SER A 317       20.12    -68.70                                   
REMARK 500  4 ILE A 318      -48.07   -157.89                                   
REMARK 500  4 ALA A 321      -20.34     57.84                                   
REMARK 500  5 ASN A 312       18.91    -69.20                                   
REMARK 500  5 PHE A 313      -22.85    174.86                                   
REMARK 500  5 PHE A 316      -39.14   -157.58                                   
REMARK 500  5 SER A 317       13.94    -69.31                                   
REMARK 500  5 ILE A 318      -53.45   -150.27                                   
REMARK 500  5 ALA A 321      -21.56     56.73                                   
REMARK 500  5 GLN A 346       34.21     39.51                                   
REMARK 500  5 SER A 347       47.42    -89.81                                   
REMARK 500  6 PHE A 313      -17.49   -162.93                                   
REMARK 500  6 PHE A 316      -42.29   -156.20                                   
REMARK 500  6 SER A 317       14.02    -69.37                                   
REMARK 500  6 ILE A 318      -42.21   -148.72                                   
REMARK 500  6 ALA A 321      -10.33     55.78                                   
REMARK 500  6 GLN A 343      -70.94   -106.54                                   
REMARK 500  6 SER A 347      120.58     69.16                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS                                         
REMARK 500                                                                      
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH          
REMARK 500 CIS AND TRANS CONFORMATION.  CIS BONDS, IF ANY, ARE LISTED           
REMARK 500 ON CISPEP RECORDS.  TRANS IS DEFINED AS 180 +/- 30 AND               
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.                                  
REMARK 500                                 MODEL     OMEGA                      
REMARK 500 MET A  307     GLY A  308          4      -141.17                    
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CHIRAL CENTERS                                             
REMARK 500                                                                      
REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL                     
REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY                      
REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR                        
REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE                                    
REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN                            
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE                   
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16)       
REMARK 500                                                                      
REMARK 500  M RES CSSEQI    IMPROPER   EXPECTED   FOUND DETAILS                 
REMARK 500  1 MET A 311        24.8      L          L   OUTSIDE RANGE           
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 25595   RELATED DB: BMRB                                 
DBREF  2N2C A  307   349  UNP    Q13148   TADBP_HUMAN    307    349             
SEQRES   1 A   43  MET GLY GLY GLY MET ASN PHE GLY ALA PHE SER ILE ASN          
SEQRES   2 A   43  PRO ALA MET MET ALA ALA ALA GLN ALA ALA LEU GLN SER          
SEQRES   3 A   43  SER TRP GLY MET MET GLY MET LEU ALA SER GLN GLN ASN          
SEQRES   4 A   43  GLN SER GLY PRO                                              
HELIX    1   1 ALA A  321  ASN A  345  1                                  25    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000