PDB Short entry for 2N4H HEADER DNA BINDING PROTEIN 18-JUN-15 2N4H TITLE SOLUTION STRUCTURE OF THE Q343R MUTANT OF TDP-43 AMYLOIDOGENIC CORE TITLE 2 REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAR DNA-BINDING PROTEIN 43; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 311-360; COMPND 5 SYNONYM: TDP-43; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TARDBP, TDP43; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PHGB KEYWDS TDP-43, AMYLOIDOGENIC CORE REGION, Q343R, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR L.JIANG,J.ZHAO,H.HU REVDAT 2 14-JUN-23 2N4H 1 REMARK REVDAT 1 20-APR-16 2N4H 0 JRNL AUTH L.L.JIANG,J.ZHAO,X.F.YIN,W.T.HE,H.YANG,M.X.CHE,H.Y.HU JRNL TITL TWO MUTATIONS G335D AND Q343R WITHIN THE AMYLOIDOGENIC CORE JRNL TITL 2 REGION OF TDP-43 INFLUENCE ITS AGGREGATION AND INCLUSION JRNL TITL 3 FORMATION JRNL REF SCI REP V. 6 23928 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27030292 JRNL DOI 10.1038/SREP23928 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, ARIA REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), LINGE, O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N4H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000104410. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 80 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 600 UM [U-99% 13C; U-99% 15N] REMARK 210 GB1-TDP(311-360)-Q343R-1, 20 MM REMARK 210 SODIUM PHOSPHATE-2, 50 MM SODIUM REMARK 210 CHLORIDE-3, 0.02 W/V SODIUM REMARK 210 AZIDE-4, 8 % [U-99% 2H] D2O-5, REMARK 210 92 % H2O-6, 92% H2O/8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCACB; REMARK 210 3D HNHA; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : MOLMOL, ARIA, CNS, SPARKY REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 313 48.64 -87.29 REMARK 500 1 ALA A 321 -51.14 -139.75 REMARK 500 1 PRO A 349 47.93 -84.03 REMARK 500 1 ASN A 352 89.80 64.45 REMARK 500 2 ALA A 321 -51.50 -137.71 REMARK 500 2 ASN A 352 -65.74 73.17 REMARK 500 3 ALA A 321 -50.05 -139.70 REMARK 500 3 ASN A 352 -79.12 64.70 REMARK 500 3 GLN A 354 -155.17 -82.80 REMARK 500 3 GLN A 356 -174.55 67.17 REMARK 500 4 PRO A 349 36.17 -92.82 REMARK 500 4 ASN A 353 -58.66 69.78 REMARK 500 4 GLN A 356 -166.63 61.34 REMARK 500 5 ALA A 321 -40.10 -138.82 REMARK 500 5 ALA A 341 108.32 64.29 REMARK 500 5 ASN A 358 -163.67 -122.62 REMARK 500 6 PRO A 320 75.16 -62.51 REMARK 500 6 GLN A 354 -36.08 178.95 REMARK 500 6 GLN A 356 -79.64 60.68 REMARK 500 7 ASN A 312 56.22 -91.81 REMARK 500 7 ILE A 318 -61.21 72.92 REMARK 500 7 ALA A 321 -34.39 174.84 REMARK 500 7 GLN A 354 -166.76 68.49 REMARK 500 8 ALA A 321 -55.57 -144.65 REMARK 500 8 PRO A 349 48.04 -82.87 REMARK 500 8 GLN A 354 56.13 -109.15 REMARK 500 9 PHE A 313 152.56 72.53 REMARK 500 9 ALA A 321 -23.98 -178.10 REMARK 500 9 ASN A 352 57.55 -114.34 REMARK 500 10 ASN A 312 88.63 44.27 REMARK 500 10 PHE A 313 -80.66 -75.54 REMARK 500 10 ALA A 321 -60.17 -135.50 REMARK 500 10 ASN A 352 88.85 64.46 REMARK 500 10 GLN A 354 56.18 -118.47 REMARK 500 10 ASN A 358 151.60 71.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25668 RELATED DB: BMRB REMARK 900 RELATED ID: 2N4G RELATED DB: PDB REMARK 900 RELATED ID: 2N3X RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 Q343R IS NATURAL VARIENT ACCORDING TO DATABASE Q13148 (TADBP_HUMAN). DBREF 2N4H A 311 360 UNP Q13148 TADBP_HUMAN 311 360 SEQADV 2N4H ARG A 343 UNP Q13148 GLN 343 SEE REMARK 999 SEQRES 1 A 50 MET ASN PHE GLY ALA PHE SER ILE ASN PRO ALA MET MET SEQRES 2 A 50 ALA ALA ALA GLN ALA ALA LEU GLN SER SER TRP GLY MET SEQRES 3 A 50 MET GLY MET LEU ALA SER ARG GLN ASN GLN SER GLY PRO SEQRES 4 A 50 SER GLY ASN ASN GLN ASN GLN GLY ASN MET GLN HELIX 1 1 ALA A 321 TRP A 334 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000