PDB Short entry for 2N5Q HEADER UNKNOWN FUNCTION 24-JUL-15 2N5Q TITLE SOLUTION STRUCTURE OF CYSTEIN-RICH PEPTIDE JS1 FROM JASMINUM SAMBAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE-RICH PEPTIDE JS1; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JASMINUM SAMBAC; SOURCE 3 ORGANISM_TAXID: 660624 KEYWDS CYSTEIN-RICH PEPTIDE, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.SHIN,G.KUMARI,A.SERRA,P.Q.T.NGUYEN,H.YOON,J.P.TAM REVDAT 2 14-JUN-23 2N5Q 1 REMARK REVDAT 1 27-JUL-16 2N5Q 0 JRNL AUTH J.SHIN,G.KUMARI,A.SERRA,P.Q.T.NGUYEN,H.YOON,S.SZE,J.P.TAM JRNL TITL IDENTIFICATION OF A CYSTEINE-RICH PEPTIDE FAMILY WITH JRNL TITL 2 UNUSUAL DISULFIDE CONNECTIVITY FROM JASMINUM SAMBAC JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000104455. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7-1.0 MM JS1-1, 90 % H2O-2, 10 REMARK 210 % D2O-3, 20 MM SODIUM PHOSPHATE- REMARK 210 4, 50 MM SODIUM CHLORIDE-5, 0.01 REMARK 210 %(W/V) SODIUM AZIDE-6, 90% H2O/ REMARK 210 10% D2O; 0.7-1.0 MM JS1-7, 100 % REMARK 210 D2O-8, 20 MM SODIUM PHOSPHATE-9, REMARK 210 50 MM SODIUM CHLORIDE-10, 0.01 % REMARK 210 (W/V) NA SODIUM AZIDE-11, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D DQF-COSY; 2D REMARK 210 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, NMRPIPE, NMRDRAW, REMARK 210 SPARKY, CNS REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 20 N GLY A 22 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 77.87 -106.22 REMARK 500 1 CYS A 3 85.22 -61.97 REMARK 500 1 GLN A 5 110.11 -35.69 REMARK 500 1 ARG A 7 -70.96 -131.56 REMARK 500 1 SER A 8 -84.68 -94.14 REMARK 500 1 ASN A 9 -43.86 -133.33 REMARK 500 1 CYS A 12 -81.56 -146.14 REMARK 500 1 CYS A 19 79.75 -62.77 REMARK 500 1 ARG A 20 -155.02 -79.81 REMARK 500 1 ASP A 21 72.36 -37.51 REMARK 500 2 CYS A 3 86.97 -60.72 REMARK 500 2 GLN A 5 110.71 -35.65 REMARK 500 2 ARG A 7 -70.25 -134.56 REMARK 500 2 SER A 8 -85.09 -95.25 REMARK 500 2 ASN A 9 -45.56 -131.65 REMARK 500 2 CYS A 12 -87.65 -145.25 REMARK 500 2 CYS A 19 79.38 -61.84 REMARK 500 2 ARG A 20 -154.56 -80.12 REMARK 500 2 ASP A 21 72.31 -37.28 REMARK 500 3 LEU A 2 52.29 -105.90 REMARK 500 3 LEU A 4 90.86 -69.18 REMARK 500 3 GLN A 5 121.30 -30.07 REMARK 500 3 ARG A 7 -44.46 -134.76 REMARK 500 3 SER A 8 -86.16 -119.17 REMARK 500 3 ASN A 9 -44.28 -136.41 REMARK 500 3 CYS A 12 -88.64 -151.94 REMARK 500 3 CYS A 19 79.18 -65.43 REMARK 500 3 ARG A 20 -153.46 -79.74 REMARK 500 3 ASP A 21 71.21 -36.57 REMARK 500 4 GLN A 5 113.38 -37.11 REMARK 500 4 ARG A 7 -70.90 -130.32 REMARK 500 4 SER A 8 -85.39 -93.50 REMARK 500 4 ASN A 9 -45.25 -132.12 REMARK 500 4 CYS A 12 -88.15 -143.43 REMARK 500 4 CYS A 19 79.22 -61.83 REMARK 500 4 ARG A 20 -155.03 -79.83 REMARK 500 4 ASP A 21 72.66 -37.78 REMARK 500 5 ARG A 7 -69.07 -128.09 REMARK 500 5 SER A 8 -84.54 -94.37 REMARK 500 5 ASN A 9 -48.86 -133.80 REMARK 500 5 CYS A 12 -92.97 -147.29 REMARK 500 5 CYS A 19 80.72 -59.38 REMARK 500 5 ARG A 20 -156.56 -80.07 REMARK 500 5 ASP A 21 73.20 -38.16 REMARK 500 6 CYS A 3 82.06 -64.22 REMARK 500 6 GLN A 5 117.41 -35.13 REMARK 500 6 ARG A 7 -73.67 -119.81 REMARK 500 6 SER A 8 -83.27 -89.74 REMARK 500 6 ASN A 9 -46.82 -134.77 REMARK 500 6 CYS A 12 -84.99 -144.51 REMARK 500 REMARK 500 THIS ENTRY HAS 178 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25725 RELATED DB: BMRB DBREF 2N5Q A 1 27 PDB 2N5Q 2N5Q 1 27 SEQRES 1 A 27 GLN LEU CYS LEU GLN CYS ARG SER ASN SER ASP CYS ASN SEQRES 2 A 27 ILE ILE TRP ARG ILE CYS ARG ASP GLY CYS CYS ASN VAL SEQRES 3 A 27 ILE SHEET 1 A 3 LEU A 4 GLN A 5 0 SHEET 2 A 3 CYS A 23 ASN A 25 -1 O CYS A 24 N LEU A 4 SHEET 3 A 3 ILE A 18 ARG A 20 -1 N ILE A 18 O ASN A 25 SSBOND 1 CYS A 3 CYS A 23 1555 1555 2.03 SSBOND 2 CYS A 6 CYS A 19 1555 1555 2.03 SSBOND 3 CYS A 12 CYS A 24 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000