PDB Short entry for 2N7Y HEADER METAL BINDING PROTEIN 27-SEP-15 2N7Y TITLE NMR STRUCTURE OF METAL-BINDING DOMAIN 1 OF ATP7B COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER-TRANSPORTING ATPASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: METAL BINDING DOMAIN (UNP RESIDUES 56-127); COMPND 5 SYNONYM: COPPER PUMP 2, WILSON DISEASE-ASSOCIATED PROTEIN, WND/140 COMPND 6 KDA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ATP7B, PWD, WC1, WND; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTYB12 KEYWDS COPPER BINDING, HYDROLASE, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.YU,W.LEE,O.DMITRIEV REVDAT 3 14-JUN-23 2N7Y 1 REMARK SEQADV REVDAT 2 14-FEB-18 2N7Y 1 JRNL REVDAT 1 28-SEP-16 2N7Y 0 JRNL AUTH C.H.YU,W.LEE,S.NOKHRIN,O.Y.DMITRIEV JRNL TITL THE STRUCTURE OF METAL BINDING DOMAIN 1 OF THE COPPER JRNL TITL 2 TRANSPORTER ATP7B REVEALS MECHANISM OF A SINGULAR WILSON JRNL TITL 3 DISEASE MUTATION. JRNL REF SCI REP V. 8 581 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29330485 JRNL DOI 10.1038/S41598-017-18951-1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, PONDEROSA-C/S REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), LEE AND MARKLEY (PONDEROSA-C/S) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: EXPLICIT WATER REFINEMENT REMARK 4 REMARK 4 2N7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000104535. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM HEPES, 0.5 MM DSS, 5 MM REMARK 210 TCEP, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D HN(COCA)CB; REMARK 210 3D HN(CA)CO; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D 1H-15N TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, PONDEROSA-C/S REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 5 -71.90 -140.00 REMARK 500 1 ILE A 36 -71.98 -96.77 REMARK 500 2 ILE A 36 -67.05 -96.79 REMARK 500 6 MET A 4 177.12 68.43 REMARK 500 6 ILE A 36 -61.78 -99.48 REMARK 500 10 ILE A 36 -60.68 -93.58 REMARK 500 11 ILE A 36 -71.47 -101.88 REMARK 500 16 THR A 17 58.16 -111.22 REMARK 500 16 ILE A 36 -79.84 -89.19 REMARK 500 18 ILE A 36 -68.15 -101.23 REMARK 500 20 GLN A 5 -50.26 -151.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25827 RELATED DB: BMRB DBREF 2N7Y A 5 76 UNP P35670 ATP7B_HUMAN 56 127 SEQADV 2N7Y ALA A 1 UNP P35670 EXPRESSION TAG SEQADV 2N7Y GLY A 2 UNP P35670 EXPRESSION TAG SEQADV 2N7Y HIS A 3 UNP P35670 EXPRESSION TAG SEQADV 2N7Y MET A 4 UNP P35670 EXPRESSION TAG SEQRES 1 A 76 ALA GLY HIS MET GLN VAL ALA THR SER THR VAL ARG ILE SEQRES 2 A 76 LEU GLY MET THR CYS GLN SER CYS VAL LYS SER ILE GLU SEQRES 3 A 76 ASP ARG ILE SER ASN LEU LYS GLY ILE ILE SER MET LYS SEQRES 4 A 76 VAL SER LEU GLU GLN GLY SER ALA THR VAL LYS TYR VAL SEQRES 5 A 76 PRO SER VAL VAL CYS LEU GLN GLN VAL CYS HIS GLN ILE SEQRES 6 A 76 GLY ASP MET GLY PHE GLU ALA SER ILE ALA GLU HELIX 1 1 THR A 17 LEU A 32 1 16 HELIX 2 2 CYS A 57 GLY A 69 1 13 SHEET 1 A 4 SER A 37 SER A 41 0 SHEET 2 A 4 SER A 46 TYR A 51 -1 O THR A 48 N LYS A 39 SHEET 3 A 4 ALA A 7 LEU A 14 -1 N ALA A 7 O TYR A 51 SHEET 4 A 4 GLU A 71 SER A 73 -1 O GLU A 71 N LEU A 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000