PDB Short entry for 2N7Z HEADER TRANSFERASE 28-SEP-15 2N7Z TITLE SOLUTION STRUCTURE OF RIP2 CARD COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 434-539; COMPND 5 EC: 2.7.11.1, 2.7.10.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIPK2, CARDIAK, RICK, RIP2, UNQ277/PRO314/PRO34092; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: P32A-DERIVED KEYWDS CARD, RIP2, TRANSFERASE, CASPASE RECRUITMENT DOMAIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Z.LIN,C.F.IBANEZ REVDAT 2 13-JAN-16 2N7Z 1 KEYWDS TITLE REVDAT 1 23-DEC-15 2N7Z 0 JRNL AUTH Z.LIN,J.Y.TANN,E.T.GOH,C.KELLY,K.B.LIM,J.F.GAO,C.F.IBANEZ JRNL TITL STRUCTURAL BASIS OF DEATH DOMAIN SIGNALING IN THE P75 JRNL TITL 2 NEUROTROPHIN RECEPTOR JRNL REF ELIFE V. 4 11692 2015 JRNL REFN ESSN 2050-084X JRNL PMID 26646181 JRNL DOI 10.7554/ELIFE.11692 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER, CYANA REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN (AMBER), (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N7Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-15. REMARK 100 THE RCSB ID CODE IS RCSB104536. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 301 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 CARD-1, 50 MM [U-98% 2H] DTT-2, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HCCH-TOCSY; 4D 13C, 15N-EDITED REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CYANA, NMRPIPE REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 11 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 2 -69.35 -123.56 REMARK 500 1 GLU A 66 42.78 -77.90 REMARK 500 1 GLU A 67 -54.46 -136.01 REMARK 500 1 LYS A 80 62.64 33.73 REMARK 500 1 MET A 82 -18.68 60.27 REMARK 500 1 GLN A 85 -37.96 -39.77 REMARK 500 1 GLU A 89 49.02 -73.19 REMARK 500 1 ILE A 90 46.10 -73.20 REMARK 500 1 GLN A 103 152.98 74.08 REMARK 500 2 ILE A 2 -64.35 -123.38 REMARK 500 2 GLU A 66 34.44 -72.11 REMARK 500 2 LYS A 80 51.38 39.13 REMARK 500 2 ARG A 95 56.83 -162.82 REMARK 500 2 LEU A 101 49.26 -145.38 REMARK 500 2 GLN A 103 123.17 66.99 REMARK 500 3 ILE A 2 -60.31 -125.37 REMARK 500 3 GLU A 67 -59.28 -137.24 REMARK 500 3 MET A 82 10.51 57.83 REMARK 500 3 GLN A 85 -48.01 -27.47 REMARK 500 3 GLU A 89 47.65 -75.63 REMARK 500 3 LEU A 91 -6.05 -59.76 REMARK 500 3 ASN A 100 105.68 62.18 REMARK 500 3 ASN A 104 66.35 -156.87 REMARK 500 4 ILE A 2 -68.58 -128.04 REMARK 500 4 GLU A 66 50.97 -68.23 REMARK 500 4 GLU A 67 -57.45 -137.98 REMARK 500 4 MET A 82 -1.07 59.30 REMARK 500 4 PRO A 86 62.46 -69.85 REMARK 500 4 LEU A 91 45.55 -102.15 REMARK 500 4 VAL A 92 72.47 60.20 REMARK 500 4 ARG A 95 68.64 -156.32 REMARK 500 5 ILE A 2 -73.21 -117.56 REMARK 500 5 GLU A 66 35.06 -71.74 REMARK 500 5 GLU A 67 -56.94 -128.76 REMARK 500 5 LEU A 91 48.46 -81.51 REMARK 500 5 ARG A 95 97.96 -162.45 REMARK 500 5 SER A 98 -100.46 -146.60 REMARK 500 5 LEU A 99 31.55 -152.79 REMARK 500 5 ASN A 100 -162.81 54.56 REMARK 500 6 ILE A 2 -73.65 -129.10 REMARK 500 6 GLU A 66 56.86 -93.97 REMARK 500 6 GLU A 67 -44.00 -143.93 REMARK 500 6 ILE A 90 45.06 -77.25 REMARK 500 6 ARG A 95 25.70 -158.83 REMARK 500 6 LEU A 101 53.11 -140.37 REMARK 500 6 GLN A 103 102.24 -55.16 REMARK 500 6 ASN A 104 110.06 -161.95 REMARK 500 7 ILE A 2 -67.68 -127.38 REMARK 500 7 GLU A 66 42.71 -66.96 REMARK 500 7 GLU A 67 -57.76 -135.96 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25828 RELATED DB: BMRB DBREF 2N7Z A 1 106 UNP O43353 RIPK2_HUMAN 434 539 SEQRES 1 A 106 GLY ILE ALA GLN GLN TRP ILE GLN SER LYS ARG GLU ASP SEQRES 2 A 106 ILE VAL ASN GLN MET THR GLU ALA CYS LEU ASN GLN SER SEQRES 3 A 106 LEU ASP ALA LEU LEU SER ARG ASP LEU ILE MET LYS GLU SEQRES 4 A 106 ASP TYR GLU LEU VAL SER THR LYS PRO THR ARG THR SER SEQRES 5 A 106 LYS VAL ARG GLN LEU LEU ASP THR THR ASP ILE GLN GLY SEQRES 6 A 106 GLU GLU PHE ALA LYS VAL ILE VAL GLN LYS LEU LYS ASP SEQRES 7 A 106 ASN LYS GLN MET GLY LEU GLN PRO TYR PRO GLU ILE LEU SEQRES 8 A 106 VAL VAL SER ARG SER PRO SER LEU ASN LEU LEU GLN ASN SEQRES 9 A 106 LYS SER HELIX 1 1 ILE A 2 MET A 18 1 17 HELIX 2 2 THR A 19 ARG A 33 1 15 HELIX 3 3 MET A 37 VAL A 44 1 8 HELIX 4 4 THR A 49 GLY A 65 1 17 HELIX 5 5 GLU A 67 ASN A 79 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000