PDB Short entry for 2NA8 HEADER MEMBRANE PROTEIN 21-DEC-15 2NA8 TITLE TRANSMEMBRANE STRUCTURE OF THE CYTOKINE RECEPTOR COMMON SUBUNIT BETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOKINE RECEPTOR COMMON SUBUNIT BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HELICAL TRANSMEMBRANE RESIDUES 432-473; COMPND 5 SYNONYM: CDW131, GM-CSF/IL-3/IL-5 RECEPTOR COMMON BETA SUBUNIT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSF2RB, IL3RB, IL5RB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET44-GB3-BC KEYWDS TRANSMEMBRANE HELIX, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 21 MDLTYP MINIMIZED AVERAGE AUTHOR T.SCHMIDT,F.YE,A.J.SITU,W.AN,M.H.GINSBERG,T.S.ULMER REVDAT 4 14-JUN-23 2NA8 1 REMARK SEQADV REVDAT 3 07-SEP-16 2NA8 1 JRNL REVDAT 2 20-JUL-16 2NA8 1 JRNL REVDAT 1 06-JUL-16 2NA8 0 JRNL AUTH T.SCHMIDT,F.YE,A.J.SITU,W.AN,M.H.GINSBERG,T.S.ULMER JRNL TITL A CONSERVED ECTODOMAIN-TRANSMEMBRANE DOMAIN LINKER MOTIF JRNL TITL 2 TUNES THE ALLOSTERIC REGULATION OF CELL SURFACE RECEPTORS. JRNL REF J.BIOL.CHEM. V. 291 17536 2016 JRNL REFN ISSN 0021-9258 JRNL PMID 27365391 JRNL DOI 10.1074/JBC.M116.733683 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NA8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000104617. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N; REMARK 210 80% 2H] PROTEIN, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCACB; 3D QUANT J CORRELATION REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 21 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 470 H ARG A 471 1.21 REMARK 500 O LEU A 470 H LYS A 473 1.44 REMARK 500 O TRP A 434 H THR A 436 1.58 REMARK 500 O TRP A 434 N THR A 436 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 433 84.20 -53.44 REMARK 500 1 ASP A 435 -74.30 51.74 REMARK 500 1 GLU A 437 -18.74 -38.86 REMARK 500 1 SER A 438 140.39 169.07 REMARK 500 1 VAL A 439 -14.63 -47.60 REMARK 500 1 TYR A 468 -101.23 49.74 REMARK 500 1 ARG A 469 -125.74 -135.65 REMARK 500 1 LEU A 470 23.88 148.55 REMARK 500 1 ARG A 471 -59.20 -4.42 REMARK 500 1 ARG A 472 -36.57 -36.15 REMARK 500 3 TYR A 468 119.65 64.44 REMARK 500 5 TYR A 468 29.68 44.65 REMARK 500 6 TYR A 468 -85.45 46.47 REMARK 500 7 TRP A 434 96.24 33.54 REMARK 500 7 TYR A 468 -85.10 44.65 REMARK 500 9 GLU A 437 -27.03 -174.29 REMARK 500 9 TYR A 468 106.59 57.41 REMARK 500 11 ARG A 469 79.85 35.64 REMARK 500 12 TYR A 468 177.55 56.81 REMARK 500 13 TYR A 468 120.59 56.39 REMARK 500 14 MET A 442 -5.27 -50.72 REMARK 500 14 TYR A 468 44.64 -108.87 REMARK 500 15 TYR A 468 8.81 51.30 REMARK 500 16 TRP A 434 127.78 57.95 REMARK 500 17 TYR A 468 121.14 57.79 REMARK 500 18 SER A 433 24.01 48.84 REMARK 500 18 LEU A 440 93.85 -28.46 REMARK 500 19 LEU A 440 92.52 -27.62 REMARK 500 19 TYR A 468 155.00 56.90 REMARK 500 20 TYR A 468 148.97 59.07 REMARK 500 21 LEU A 440 94.00 -28.70 REMARK 500 21 TYR A 468 -108.48 56.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25931 RELATED DB: BMRB DBREF 2NA8 A 432 473 UNP P32927 IL3RB_HUMAN 432 473 SEQADV 2NA8 GLY A 430 UNP P32927 EXPRESSION TAG SEQADV 2NA8 LYS A 431 UNP P32927 EXPRESSION TAG SEQRES 1 A 44 GLY LYS ARG SER TRP ASP THR GLU SER VAL LEU PRO MET SEQRES 2 A 44 TRP VAL LEU ALA LEU ILE VAL ILE PHE LEU THR ILE ALA SEQRES 3 A 44 VAL LEU LEU ALA LEU ARG PHE CYS GLY ILE TYR GLY TYR SEQRES 4 A 44 ARG LEU ARG ARG LYS HELIX 1 1 PRO A 441 GLY A 467 1 27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000