PDB Short entry for 2NAO HEADER PROTEIN FIBRIL 07-JAN-16 2NAO TITLE ATOMIC RESOLUTION STRUCTURE OF A DISEASE-RELEVANT ABETA(1-42) AMYLOID TITLE 2 FIBRIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-AMYLOID PROTEIN 42; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: BETA-APP42; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APP, A4, AD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: NN KEYWDS PROTEIN FIBRIL EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.A.WAELTI,F.RAVOTTI,H.ARAI,C.GLABE,J.WALL,A.BOCKMANN,P.GUNTERT, AUTHOR 2 B.H.MEIER,R.RIEK REVDAT 3 07-SEP-16 2NAO 1 JRNL REVDAT 2 17-AUG-16 2NAO 1 JRNL REVDAT 1 27-JUL-16 2NAO 0 JRNL AUTH M.A.WALTI,F.RAVOTTI,H.ARAI,C.G.GLABE,J.S.WALL,A.BOCKMANN, JRNL AUTH 2 P.GUNTERT,B.H.MEIER,R.RIEK JRNL TITL ATOMIC-RESOLUTION STRUCTURE OF A DISEASE-RELEVANT A BETA JRNL TITL 2 (1-42) AMYLOID FIBRIL. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E4976 2016 JRNL REFN ISSN 0027-8424 JRNL PMID 27469165 JRNL DOI 10.1073/PNAS.1600749113 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.97 REMARK 3 AUTHORS : GUNTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-16. REMARK 100 THE RCSB ID CODE IS RCSB104631. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 277 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 100 MM SODIUM CHLORIDE, 100 MM REMARK 210 SODIUM PHOSPHATE, 100 UM ZINC REMARK 210 CHLORIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DARR; PAR; PAIN; CHHC; NHHC; REMARK 210 TEDOR REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.97 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 14 -74.87 -77.06 REMARK 500 1 PHE A 20 -171.39 65.04 REMARK 500 1 ALA A 21 -46.28 -170.77 REMARK 500 1 ASP A 23 123.37 -178.85 REMARK 500 1 LYS A 28 65.98 -101.26 REMARK 500 1 VAL A 39 123.76 -177.04 REMARK 500 1 ASP B 7 49.35 -90.45 REMARK 500 1 HIS B 13 43.78 -161.43 REMARK 500 1 HIS B 14 -75.00 -153.56 REMARK 500 1 PHE B 20 -172.51 64.58 REMARK 500 1 ALA B 21 -45.86 -171.66 REMARK 500 1 ASP B 23 123.49 -179.23 REMARK 500 1 LYS B 28 66.16 -101.70 REMARK 500 1 VAL B 39 123.71 -177.47 REMARK 500 1 SER C 8 -50.42 -159.05 REMARK 500 1 TYR C 10 85.30 -154.51 REMARK 500 1 VAL C 12 100.16 60.54 REMARK 500 1 HIS C 14 -69.15 72.37 REMARK 500 1 PHE C 20 -173.77 64.25 REMARK 500 1 ALA C 21 -46.26 -172.78 REMARK 500 1 ASP C 23 123.42 -179.18 REMARK 500 1 LYS C 28 66.27 -101.55 REMARK 500 1 VAL C 39 123.76 -177.52 REMARK 500 1 SER D 8 36.02 -163.20 REMARK 500 1 HIS D 14 -82.44 65.89 REMARK 500 1 PHE D 20 -171.47 65.29 REMARK 500 1 ALA D 21 -45.70 -170.64 REMARK 500 1 ASP D 23 123.64 -179.54 REMARK 500 1 LYS D 28 65.96 -101.29 REMARK 500 1 VAL D 39 123.82 -176.84 REMARK 500 1 GLU E 11 -36.26 -177.74 REMARK 500 1 HIS E 13 88.70 -170.07 REMARK 500 1 HIS E 14 -70.78 71.35 REMARK 500 1 PHE E 20 -172.34 64.52 REMARK 500 1 ALA E 21 -45.87 -171.58 REMARK 500 1 ASP E 23 123.51 -179.17 REMARK 500 1 LYS E 28 66.24 -101.45 REMARK 500 1 VAL E 39 123.64 -177.50 REMARK 500 1 GLU F 11 -38.45 -178.73 REMARK 500 1 HIS F 14 -71.81 71.26 REMARK 500 1 PHE F 20 -173.72 64.28 REMARK 500 1 ALA F 21 -46.28 -172.84 REMARK 500 1 ASP F 23 123.38 -179.21 REMARK 500 1 LYS F 28 66.16 -101.73 REMARK 500 1 VAL F 39 123.75 -177.49 REMARK 500 2 ASP A 7 36.29 -96.15 REMARK 500 2 SER A 8 -170.41 52.95 REMARK 500 2 TYR A 10 -46.42 -153.61 REMARK 500 2 HIS A 14 163.70 63.20 REMARK 500 2 PHE A 19 -55.08 -151.44 REMARK 500 REMARK 500 THIS ENTRY HAS 525 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26692 RELATED DB: BMRB DBREF 2NAO A 1 42 UNP P05067 A4_HUMAN 672 713 DBREF 2NAO B 1 42 UNP P05067 A4_HUMAN 672 713 DBREF 2NAO C 1 42 UNP P05067 A4_HUMAN 672 713 DBREF 2NAO D 1 42 UNP P05067 A4_HUMAN 672 713 DBREF 2NAO E 1 42 UNP P05067 A4_HUMAN 672 713 DBREF 2NAO F 1 42 UNP P05067 A4_HUMAN 672 713 SEQRES 1 A 42 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 A 42 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 A 42 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 A 42 VAL ILE ALA SEQRES 1 B 42 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 B 42 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 B 42 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 B 42 VAL ILE ALA SEQRES 1 C 42 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 C 42 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 C 42 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 C 42 VAL ILE ALA SEQRES 1 D 42 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 D 42 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 D 42 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 D 42 VAL ILE ALA SEQRES 1 E 42 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 E 42 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 E 42 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 E 42 VAL ILE ALA SEQRES 1 F 42 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 F 42 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 F 42 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 F 42 VAL ILE ALA SHEET 1 A 3 ALA A 2 HIS A 6 0 SHEET 2 A 3 ALA B 2 HIS B 6 1 O GLU B 3 N PHE A 4 SHEET 3 A 3 ALA C 2 HIS C 6 1 O GLU C 3 N PHE B 4 SHEET 1 B 3 GLN A 15 LEU A 17 0 SHEET 2 B 3 GLN B 15 LEU B 17 1 O LYS B 16 N GLN A 15 SHEET 3 B 3 GLN C 15 LEU C 17 1 O LYS C 16 N GLN B 15 SHEET 1 C 3 VAL A 40 ILE A 41 0 SHEET 2 C 3 VAL B 40 ILE B 41 1 O ILE B 41 N VAL A 40 SHEET 3 C 3 VAL C 40 ILE C 41 1 O ILE C 41 N VAL B 40 SHEET 1 D 3 ALA D 2 HIS D 6 0 SHEET 2 D 3 ALA E 2 HIS E 6 1 O GLU E 3 N PHE D 4 SHEET 3 D 3 ALA F 2 HIS F 6 1 O GLU F 3 N PHE E 4 SHEET 1 E 3 GLN D 15 LEU D 17 0 SHEET 2 E 3 GLN E 15 LEU E 17 1 O LYS E 16 N GLN D 15 SHEET 3 E 3 GLN F 15 LEU F 17 1 O LYS F 16 N GLN E 15 SHEET 1 F 3 VAL D 40 ILE D 41 0 SHEET 2 F 3 VAL E 40 ILE E 41 1 O ILE E 41 N VAL D 40 SHEET 3 F 3 VAL F 40 ILE F 41 1 O ILE F 41 N VAL E 40 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000