PDB Short entry for 2NAT HEADER ANTIMICROBIAL PROTEIN 11-JAN-16 2NAT TITLE STRUCTURAL INSIGHTS INTO INTERACTION OF KYE28 AND LIPOPOLYSACHHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPARIN COFACTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEPARIN COFACTOR II, HC-II, PROTEASE INHIBITOR LEUSERPIN-2, COMPND 5 HLS2, SERPIN D1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS ANTIMICROBIAL PEPTIDE, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.BHUNIA,M.MALMSTEN,A.DATTA REVDAT 3 14-JUN-23 2NAT 1 REMARK REVDAT 2 07-JUN-17 2NAT 1 JRNL REVDAT 1 18-MAY-16 2NAT 0 JRNL AUTH A.DATTA,D.BHATTACHARYYA,S.SINGH,A.GHOSH,A.SCHMIDTCHEN, JRNL AUTH 2 M.MALMSTEN,A.BHUNIA JRNL TITL ROLE OF AROMATIC AMINO ACIDS IN LIPOPOLYSACCHARIDE AND JRNL TITL 2 MEMBRANE INTERACTIONS OF ANTIMICROBIAL PEPTIDES FOR USE IN JRNL TITL 3 PLANT DISEASE CONTROL. JRNL REF J. BIOL. CHEM. V. 291 13301 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27137928 JRNL DOI 10.1074/JBC.M116.719575 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NAT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000104635. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM ENTITY-1, 1 MM TSP-2, 55.5 REMARK 210 MM H2O-3, 61.3 MM D2O-4, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : ASCEND TM REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 3 -80.25 -42.54 REMARK 500 1 ILE A 4 -31.38 -134.05 REMARK 500 1 LYS A 13 -88.29 -103.90 REMARK 500 1 LEU A 14 -90.39 -122.13 REMARK 500 1 THR A 15 -59.59 -130.67 REMARK 500 1 ARG A 17 -80.12 -43.95 REMARK 500 1 ASN A 22 -53.29 -121.82 REMARK 500 2 GLU A 3 -80.25 -42.46 REMARK 500 2 ILE A 4 -31.42 -133.95 REMARK 500 2 LYS A 13 -82.95 -103.61 REMARK 500 2 LEU A 14 -90.02 -121.14 REMARK 500 2 THR A 15 -57.54 -131.01 REMARK 500 2 ARG A 17 -79.27 -45.25 REMARK 500 2 ASN A 22 -51.74 -122.55 REMARK 500 3 GLU A 3 -75.53 -44.47 REMARK 500 3 ILE A 4 -33.65 -134.82 REMARK 500 3 LYS A 13 -87.09 -101.80 REMARK 500 3 LEU A 14 -90.92 -121.56 REMARK 500 3 THR A 15 -58.69 -130.90 REMARK 500 3 ARG A 17 -79.15 -44.31 REMARK 500 3 ASN A 22 -52.97 -121.92 REMARK 500 4 GLU A 3 -79.45 -42.13 REMARK 500 4 ILE A 4 -32.09 -133.57 REMARK 500 4 LYS A 13 -79.96 -108.53 REMARK 500 4 LEU A 14 -94.58 -112.51 REMARK 500 4 THR A 15 -51.44 -133.90 REMARK 500 4 ARG A 17 -73.51 -45.87 REMARK 500 4 ARG A 21 -78.27 -46.76 REMARK 500 4 TYR A 25 83.94 -11.90 REMARK 500 5 ILE A 4 -37.59 -138.18 REMARK 500 5 THR A 5 -49.73 -29.70 REMARK 500 5 ARG A 12 -72.74 -44.03 REMARK 500 5 LYS A 13 -77.85 -107.09 REMARK 500 5 LEU A 14 -99.62 -112.39 REMARK 500 5 THR A 15 -40.39 -137.09 REMARK 500 5 ARG A 17 -74.21 -80.15 REMARK 500 5 ARG A 21 -60.39 -98.73 REMARK 500 6 GLU A 3 -80.30 -42.43 REMARK 500 6 ILE A 4 -31.88 -133.99 REMARK 500 6 LYS A 13 -81.29 -112.29 REMARK 500 6 LEU A 14 -97.53 -110.63 REMARK 500 6 THR A 15 -48.49 -134.69 REMARK 500 6 ARG A 17 -72.72 -50.98 REMARK 500 6 ASN A 22 -60.04 -123.10 REMARK 500 7 GLU A 3 -75.55 -41.42 REMARK 500 7 ILE A 4 -33.18 -133.35 REMARK 500 7 LYS A 13 -81.42 -110.47 REMARK 500 7 LEU A 14 -84.03 -121.96 REMARK 500 7 THR A 15 -64.21 -130.02 REMARK 500 7 ARG A 17 -79.32 -42.48 REMARK 500 REMARK 500 THIS ENTRY HAS 150 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25946 RELATED DB: BMRB DBREF 2NAT A 1 28 UNP P05546 HEP2_HUMAN 192 219 SEQRES 1 A 28 LYS TYR GLU ILE THR THR ILE HIS ASN LEU PHE ARG LYS SEQRES 2 A 28 LEU THR HIS ARG LEU PHE ARG ARG ASN PHE GLY TYR THR SEQRES 3 A 28 LEU ARG HELIX 1 1 THR A 6 PHE A 11 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000