PDB Short entry for 2NCN HEADER PROTEIN TRANSPORT 11-APR-16 2NCN TITLE SOLUTION STRUCTURE OF THE AUTOPHAGY-RELATED PROTEIN LC3C COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOPHAGY-RELATED PROTEIN LC3C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AUTOPHAGY-RELATED PROTEIN LC3 C, AUTOPHAGY-RELATED COMPND 5 UBIQUITIN-LIKE MODIFIER LC3 C, MAP1 LIGHT CHAIN 3-LIKE PROTEIN 3, COMPND 6 MAP1A/MAP1B LIGHT CHAIN 3 C, MAP1A/MAP1B LC3 C, MICROTUBULE- COMPND 7 ASSOCIATED PROTEIN 1 LIGHT CHAIN 3 GAMMA; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP1LC3C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-4T-2 KEYWDS PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.KRICHEL,O.H.WEIERGRAEBER,D.WILLBOLD,P.NEUDECKER REVDAT 3 14-JUN-23 2NCN 1 REMARK REVDAT 2 23-SEP-20 2NCN 1 JRNL REMARK SEQADV REVDAT 1 19-APR-17 2NCN 0 JRNL AUTH C.KRICHEL,C.MOCKEL,O.SCHILLINGER,P.F.HUESGEN,H.STICHT, JRNL AUTH 2 B.STRODEL,O.H.WEIERGRABER,D.WILLBOLD,P.NEUDECKER JRNL TITL SOLUTION STRUCTURE OF THE AUTOPHAGY-RELATED PROTEIN LC3C JRNL TITL 2 REVEALS A POLYPROLINE II MOTIF ON A MOBILE TETHER WITH JRNL TITL 3 PHOSPHORYLATION SITE. JRNL REF SCI REP V. 9 14167 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 31578424 JRNL DOI 10.1038/S41598-019-48155-8 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2, ARIA 2, CNS 1.21 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA), BRUNGER, ADAMS, REMARK 3 CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NCN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000104697. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.15 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 171 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.35-0.7 MM [U-15N] MICROTUBULE REMARK 210 -ASSOCIATED PROTEIN LIGHT CHAIN REMARK 210 3C (LC3C), 20 MM PIPES, 150 MM REMARK 210 SODIUM CHLORIDE, 0.1 MM EDTA, 2% REMARK 210 [U-2H] GLYCEROL, 90% H2O, 10% REMARK 210 D2O, 90% H2O/10% D2O; 0.35-0.7 REMARK 210 MM [U-13C; U-15N] MICROTUBULE- REMARK 210 ASSOCIATED PROTEIN LIGHT CHAIN REMARK 210 3C (LC3C), 20 MM PIPES, 150 MM REMARK 210 SODIUM CHLORIDE, 0.1 MM EDTA, 2% REMARK 210 [U-2H] GLYCEROL, 90% H2O, 10% REMARK 210 D2O, 90% H2O/10% D2O; 0.35-0.7 REMARK 210 MM [U-13C; U-15N] MICROTUBULE- REMARK 210 ASSOCIATED PROTEIN LIGHT CHAIN REMARK 210 3C (LC3C), 20 MM PIPES, 150 MM REMARK 210 SODIUM CHLORIDE, 0.1 MM EDTA, 2% REMARK 210 [U-2H] GLYCEROL, 100% D2O, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-15N HSQC; 3D 1H-15N TOCSY; REMARK 210 3D 1H-15N NOESY; 3D 1H-15N 1H- REMARK 210 15N NOESY; 3D HNHA; 2D 1H-13C REMARK 210 HSQC; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D C(CO)NH; 3D H(CCO) REMARK 210 NH; 3D HCCH-COSY; 3D HCCH-TOCSY; REMARK 210 3D 1H-13C NOESY; 3D 1H-13C 1H- REMARK 210 15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, ANALYSIS, CNS 1.21 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 17 OE1 GLU A 25 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 6 82.28 61.68 REMARK 500 1 PRO A 8 -159.94 -90.67 REMARK 500 1 GLN A 15 -77.11 -137.73 REMARK 500 1 ARG A 16 77.99 46.98 REMARK 500 1 LYS A 92 -54.69 -136.81 REMARK 500 1 THR A 124 -0.64 72.13 REMARK 500 1 PHE A 125 -66.65 66.60 REMARK 500 2 PRO A 8 96.69 -59.66 REMARK 500 2 PRO A 12 103.07 -58.41 REMARK 500 2 PHE A 13 78.33 58.45 REMARK 500 2 ARG A 16 176.95 65.32 REMARK 500 2 THR A 48 34.60 -83.98 REMARK 500 2 ALA A 84 153.49 65.13 REMARK 500 2 LYS A 92 -67.80 -150.78 REMARK 500 3 PRO A 8 89.73 -67.28 REMARK 500 3 SER A 9 45.49 -85.26 REMARK 500 3 PRO A 12 102.86 -55.12 REMARK 500 3 LYS A 14 81.33 55.21 REMARK 500 3 GLN A 15 85.46 -67.62 REMARK 500 3 ARG A 16 176.71 66.69 REMARK 500 3 THR A 82 36.49 -92.49 REMARK 500 3 ALA A 84 98.61 -173.32 REMARK 500 3 ASN A 91 -4.12 67.75 REMARK 500 3 VAL A 95 49.98 37.21 REMARK 500 3 PHE A 125 179.76 66.97 REMARK 500 4 THR A 48 -36.53 -134.90 REMARK 500 4 LYS A 92 -72.43 -112.61 REMARK 500 5 PRO A 4 88.55 -65.35 REMARK 500 5 PRO A 8 37.02 -80.49 REMARK 500 5 SER A 9 -69.55 -170.50 REMARK 500 5 VAL A 10 102.68 68.86 REMARK 500 5 ARG A 16 -52.11 -176.53 REMARK 500 5 PHE A 49 83.91 60.42 REMARK 500 5 LYS A 92 -58.56 -132.87 REMARK 500 5 VAL A 95 87.22 -69.07 REMARK 500 5 SER A 96 97.86 -69.01 REMARK 500 6 SER A 0 60.12 60.38 REMARK 500 6 PHE A 13 72.13 55.00 REMARK 500 6 PHE A 49 68.24 -161.31 REMARK 500 6 THR A 82 51.48 -103.95 REMARK 500 6 GLU A 83 -164.28 60.65 REMARK 500 6 ASN A 91 18.91 59.70 REMARK 500 6 LYS A 92 -59.29 -135.51 REMARK 500 6 SER A 121 139.09 70.48 REMARK 500 6 PHE A 125 -56.85 -130.36 REMARK 500 7 SER A 9 -58.23 -175.24 REMARK 500 7 PHE A 13 -83.74 -105.55 REMARK 500 7 GLN A 15 44.91 -85.55 REMARK 500 7 ARG A 16 -61.21 71.32 REMARK 500 7 ALA A 81 44.87 -84.34 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26603 RELATED DB: BMRB DBREF 2NCN A 1 126 UNP Q9BXW4 MLP3C_HUMAN 1 126 SEQADV 2NCN GLY A -1 UNP Q9BXW4 EXPRESSION TAG SEQADV 2NCN SER A 0 UNP Q9BXW4 EXPRESSION TAG SEQRES 1 A 128 GLY SER MET PRO PRO PRO GLN LYS ILE PRO SER VAL ARG SEQRES 2 A 128 PRO PHE LYS GLN ARG LYS SER LEU ALA ILE ARG GLN GLU SEQRES 3 A 128 GLU VAL ALA GLY ILE ARG ALA LYS PHE PRO ASN LYS ILE SEQRES 4 A 128 PRO VAL VAL VAL GLU ARG TYR PRO ARG GLU THR PHE LEU SEQRES 5 A 128 PRO PRO LEU ASP LYS THR LYS PHE LEU VAL PRO GLN GLU SEQRES 6 A 128 LEU THR MET THR GLN PHE LEU SER ILE ILE ARG SER ARG SEQRES 7 A 128 MET VAL LEU ARG ALA THR GLU ALA PHE TYR LEU LEU VAL SEQRES 8 A 128 ASN ASN LYS SER LEU VAL SER MET SER ALA THR MET ALA SEQRES 9 A 128 GLU ILE TYR ARG ASP TYR LYS ASP GLU ASP GLY PHE VAL SEQRES 10 A 128 TYR MET THR TYR ALA SER GLN GLU THR PHE GLY HELIX 1 1 SER A 18 PHE A 33 1 16 HELIX 2 2 THR A 65 ARG A 76 1 12 HELIX 3 3 THR A 100 LYS A 109 1 10 SHEET 1 A 4 LYS A 57 PRO A 61 0 SHEET 2 A 4 LYS A 36 ARG A 43 -1 N ILE A 37 O VAL A 60 SHEET 3 A 4 VAL A 115 ALA A 120 1 O MET A 117 N VAL A 40 SHEET 4 A 4 TYR A 86 VAL A 89 -1 N LEU A 88 O THR A 118 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000