PDB Short entry for 2NDH HEADER IMMUNE SYSTEM 27-MAY-16 2NDH TITLE NMR SOLUTION STRUCTURE OF MAL/TIRAP TIR DOMAIN (C116A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL/INTERLEUKIN-1 RECEPTOR DOMAIN-CONTAINING ADAPTER COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: TIR DOMAIN RESIDUES 79-221; COMPND 6 SYNONYM: TIR DOMAIN-CONTAINING ADAPTER PROTEIN, ADAPTOR PROTEIN COMPND 7 WYATT, MYD88 ADAPTER-LIKE PROTEIN, MYD88-2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TIRAP, MAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PMCSG7 KEYWDS IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.LAVRENCIC,M.MOBLI REVDAT 5 14-JUN-23 2NDH 1 REMARK SEQADV REVDAT 4 23-AUG-17 2NDH 1 JRNL REVDAT 3 16-AUG-17 2NDH 1 JRNL REVDAT 2 26-JUL-17 2NDH 1 JRNL REVDAT 1 31-MAY-17 2NDH 0 JRNL AUTH M.M.HUGHES,P.LAVRENCIC,R.C.COLL,T.VE,D.G.RYAN,N.C.WILLIAMS, JRNL AUTH 2 D.MENON,A.MANSELL,P.G.BOARD,M.MOBLI,B.KOBE,L.A.J.O'NEILL JRNL TITL SOLUTION STRUCTURE OF THE TLR ADAPTOR MAL/TIRAP REVEALS AN JRNL TITL 2 INTACT BB LOOP AND SUPPORTS MAL CYS91 GLUTATHIONYLATION FOR JRNL TITL 3 SIGNALING. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E6480 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28739909 JRNL DOI 10.1073/PNAS.1701868114 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AUTOMATED NOE ASSIGNMENT REMARK 4 REMARK 4 2NDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000104727. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 291 REMARK 210 PH : 8.6 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 300 UM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 20 MM TRIS, 5 % D2O, REMARK 210 200 MM SODIUM CHLORIDE, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNCO; 3D HCCH- REMARK 210 TOCSY; 2D 1H-13C HSQC ALIPHATIC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D 1H- REMARK 210 15N NOESY; 3D HBHA(CO)NH; 3D REMARK 210 HN(CO)CA REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TALOS TALOS+, CCPNMR 2.4, REMARK 210 TOPSPIN, ROWLAND_NMR_TOOLKIT 3 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 132 179.06 -59.46 REMARK 500 1 ALA A 171 15.18 -144.78 REMARK 500 1 PHE A 193 -178.68 -174.21 REMARK 500 1 TYR A 195 -53.57 -121.04 REMARK 500 1 TYR A 196 89.36 58.27 REMARK 500 1 PRO A 202 78.57 -69.76 REMARK 500 1 LEU A 220 39.75 -97.19 REMARK 500 2 VAL A 130 139.25 -174.24 REMARK 500 2 PRO A 169 -173.33 -69.76 REMARK 500 2 ALA A 171 -50.26 -136.40 REMARK 500 2 SER A 183 -174.19 -68.94 REMARK 500 2 ARG A 184 -75.08 -76.50 REMARK 500 2 ALA A 185 47.88 -84.70 REMARK 500 2 LEU A 191 47.08 -90.55 REMARK 500 2 LEU A 220 39.87 -97.60 REMARK 500 3 SER A 83 -70.16 -97.83 REMARK 500 3 ASP A 85 -74.81 -116.28 REMARK 500 3 ALA A 171 -70.47 -88.82 REMARK 500 3 ALA A 185 47.87 -84.55 REMARK 500 3 PRO A 202 85.68 -69.77 REMARK 500 3 PHE A 206 -74.94 -108.29 REMARK 500 3 LEU A 220 39.84 -97.46 REMARK 500 4 ASP A 85 -74.76 -106.02 REMARK 500 4 SER A 110 73.88 -113.94 REMARK 500 4 SER A 113 -37.20 -137.26 REMARK 500 4 ARG A 121 173.25 -54.48 REMARK 500 4 SER A 139 42.56 -92.97 REMARK 500 4 ALA A 171 -73.58 -101.29 REMARK 500 4 ALA A 185 48.16 -84.58 REMARK 500 4 LEU A 191 46.54 -99.20 REMARK 500 4 PHE A 206 -74.81 -90.30 REMARK 500 4 LEU A 220 39.67 -96.48 REMARK 500 5 SER A 83 -70.11 -70.27 REMARK 500 5 SER A 110 41.56 -93.71 REMARK 500 5 ARG A 121 173.61 -55.38 REMARK 500 5 ALA A 171 -75.22 -73.12 REMARK 500 5 ALA A 185 48.46 -84.53 REMARK 500 5 PRO A 202 85.53 -69.75 REMARK 500 5 PHE A 206 -75.21 -51.75 REMARK 500 5 LEU A 220 39.84 -97.67 REMARK 500 6 SER A 83 -73.14 -96.92 REMARK 500 6 SER A 131 -171.74 -66.22 REMARK 500 6 SER A 139 38.04 -94.69 REMARK 500 6 PRO A 169 -171.65 -69.76 REMARK 500 6 ALA A 185 48.01 -84.65 REMARK 500 6 ARG A 192 109.91 -52.23 REMARK 500 6 PHE A 206 -74.05 -51.57 REMARK 500 6 LEU A 220 39.87 -97.22 REMARK 500 7 TRP A 82 -74.77 -119.54 REMARK 500 7 SER A 83 -68.74 -97.86 REMARK 500 REMARK 500 THIS ENTRY HAS 184 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YP2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE REMARK 900 RELATED ID: 3UB2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE REMARK 900 RELATED ID: 4LQD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE REMARK 900 RELATED ID: 4FZ5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE REMARK 900 RELATED ID: 26061 RELATED DB: BMRB DBREF 2NDH A 79 221 UNP P58753 TIRAP_HUMAN 79 221 SEQADV 2NDH ALA A 116 UNP P58753 CYS 116 ENGINEERED MUTATION SEQRES 1 A 143 SER SER ARG TRP SER LYS ASP TYR ASP VAL CYS VAL CYS SEQRES 2 A 143 HIS SER GLU GLU ASP LEU VAL ALA ALA GLN ASP LEU VAL SEQRES 3 A 143 SER TYR LEU GLU GLY SER THR ALA SER LEU ARG ALA PHE SEQRES 4 A 143 LEU GLN LEU ARG ASP ALA THR PRO GLY GLY ALA ILE VAL SEQRES 5 A 143 SER GLU LEU CYS GLN ALA LEU SER SER SER HIS CYS ARG SEQRES 6 A 143 VAL LEU LEU ILE THR PRO GLY PHE LEU GLN ASP PRO TRP SEQRES 7 A 143 CYS LYS TYR GLN MET LEU GLN ALA LEU THR GLU ALA PRO SEQRES 8 A 143 GLY ALA GLU GLY CYS THR ILE PRO LEU LEU SER GLY LEU SEQRES 9 A 143 SER ARG ALA ALA TYR PRO PRO GLU LEU ARG PHE MET TYR SEQRES 10 A 143 TYR VAL ASP GLY ARG GLY PRO ASP GLY GLY PHE ARG GLN SEQRES 11 A 143 VAL LYS GLU ALA VAL MET ARG TYR LEU GLN THR LEU SER HELIX 1 1 SER A 93 GLU A 95 5 3 HELIX 2 2 ASP A 96 GLY A 109 1 14 HELIX 3 3 CYS A 134 SER A 140 1 7 HELIX 4 4 ASP A 154 MET A 161 1 8 HELIX 5 5 MET A 161 THR A 166 1 6 HELIX 6 6 PRO A 188 ARG A 192 5 5 HELIX 7 7 GLY A 204 LEU A 217 1 14 HELIX 8 8 GLN A 218 SER A 221 5 4 SHEET 1 A 4 ALA A 116 PHE A 117 0 SHEET 2 A 4 VAL A 88 CYS A 89 1 N VAL A 88 O PHE A 117 SHEET 3 A 4 CYS A 142 ARG A 143 1 O CYS A 142 N CYS A 89 SHEET 4 A 4 CYS A 174 THR A 175 1 O CYS A 174 N ARG A 143 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000