PDB Short entry for 2NLL HEADER TRANSCRIPTION/DNA 20-NOV-96 2NLL TITLE RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN TITLE 2 HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*AP*GP*GP*TP*CP*AP*TP*TP*(5IU) COMPND 3 P*CP*AP*GP*GP*TP*CP*AP*G)-3'); COMPND 4 CHAIN: C; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*CP*TP*GP*AP*CP*CP*TP*GP*AP*AP*AP*TP*GP*AP*CP*CP*T P*G)-3'); COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PROTEIN (RETINOIC ACID RECEPTOR); COMPND 13 CHAIN: A; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: PROTEIN (THYROID HORMONE RECEPTOR); COMPND 17 CHAIN: B; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 4; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX (TRANSCRIPTION REGULATION-DNA), DNA-BINDING, NUCLEAR PROTEIN, KEYWDS 2 ZINC- FINGER, MULTIGENE FAMILY, ALTERNATIVE SPLICING, RECEPTOR, KEYWDS 3 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.RASTINEJAD,T.PERLMANN,R.M.EVANS,P.B.SIGLER REVDAT 3 21-FEB-24 2NLL 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2NLL 1 VERSN REVDAT 1 12-MAR-97 2NLL 0 JRNL AUTH F.RASTINEJAD,T.PERLMANN,R.M.EVANS,P.B.SIGLER JRNL TITL STRUCTURAL DETERMINANTS OF NUCLEAR RECEPTOR ASSEMBLY ON DNA JRNL TITL 2 DIRECT REPEATS. JRNL REF NATURE V. 375 203 1995 JRNL REFN ISSN 0028-0836 JRNL PMID 7746322 JRNL DOI 10.1038/375203A0 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 44875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 449 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 51.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1902 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1379 REMARK 3 NUCLEIC ACID ATOMS : 732 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 1.970 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000178405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-95 REMARK 200 TEMPERATURE (KELVIN) : 120.00 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NONE REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44875 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZED FROM 40% PEG 3350 25 MM REMARK 280 IMADAZOLE BUFFER, PH 7.0, 400 MM NH4CL, 10 MM DTT, AND 5 MM MGCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.45000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.85000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.85000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.45000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 502 C5' DC C 502 C4' 0.048 REMARK 500 DC C 502 O3' DC C 502 C3' -0.057 REMARK 500 DA C 503 P DA C 503 O5' 0.125 REMARK 500 DA C 503 O3' DG C 504 P 0.108 REMARK 500 DG C 504 P DG C 504 O5' 0.132 REMARK 500 DG C 504 O3' DG C 504 C3' 0.099 REMARK 500 DG C 504 N7 DG C 504 C8 0.042 REMARK 500 DG C 504 O3' DG C 505 P 0.141 REMARK 500 DG C 505 O4' DG C 505 C1' 0.069 REMARK 500 DG C 505 O3' DT C 506 P 0.084 REMARK 500 DT C 506 C5 DT C 506 C7 0.042 REMARK 500 DC C 507 P DC C 507 O5' 0.070 REMARK 500 DA C 508 O4' DA C 508 C1' 0.088 REMARK 500 DA C 508 C6 DA C 508 N1 -0.042 REMARK 500 DT C 509 P DT C 509 O5' 0.085 REMARK 500 DT C 509 C5 DT C 509 C7 0.039 REMARK 500 DT C 509 O3' DT C 510 P -0.077 REMARK 500 DT C 510 N1 DT C 510 C2 0.057 REMARK 500 DA C 513 P DA C 513 O5' 0.097 REMARK 500 DA C 513 N9 DA C 513 C4 0.051 REMARK 500 DG C 514 O3' DG C 515 P 0.087 REMARK 500 DG C 515 O4' DG C 515 C1' 0.080 REMARK 500 DG C 515 O3' DT C 516 P -0.101 REMARK 500 DT C 516 P DT C 516 O5' 0.068 REMARK 500 DT C 516 C5 DT C 516 C7 -0.062 REMARK 500 DC C 517 P DC C 517 O5' -0.062 REMARK 500 DA C 518 C5' DA C 518 C4' 0.046 REMARK 500 DT D 522 P DT D 522 O5' -0.071 REMARK 500 DT D 522 C5' DT D 522 C4' 0.043 REMARK 500 DT D 522 C5 DT D 522 C7 0.046 REMARK 500 DG D 523 O3' DA D 524 P -0.079 REMARK 500 DA D 524 P DA D 524 O5' 0.098 REMARK 500 DA D 524 C6 DA D 524 N1 -0.055 REMARK 500 DA D 524 N9 DA D 524 C4 0.086 REMARK 500 DC D 525 C4 DC D 525 C5 0.048 REMARK 500 DC D 526 O3' DC D 526 C3' -0.059 REMARK 500 DC D 526 N1 DC D 526 C2 -0.062 REMARK 500 DC D 526 C2 DC D 526 N3 0.064 REMARK 500 DC D 526 C5 DC D 526 C6 0.054 REMARK 500 DT D 527 C4 DT D 527 C5 0.057 REMARK 500 DT D 527 C5 DT D 527 C7 0.041 REMARK 500 DT D 527 O3' DG D 528 P -0.102 REMARK 500 DA D 529 P DA D 529 O5' 0.062 REMARK 500 DA D 529 O3' DA D 529 C3' -0.043 REMARK 500 DA D 530 N1 DA D 530 C2 -0.054 REMARK 500 DA D 530 C4 DA D 530 C5 -0.056 REMARK 500 DA D 531 N9 DA D 531 C4 0.061 REMARK 500 DA D 531 C6 DA D 531 N6 -0.059 REMARK 500 DT D 532 O3' DG D 533 P 0.083 REMARK 500 DC D 535 O3' DC D 535 C3' -0.045 REMARK 500 REMARK 500 THIS ENTRY HAS 52 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 502 C4' - C3' - C2' ANGL. DEV. = 5.5 DEGREES REMARK 500 DA C 503 C3' - O3' - P ANGL. DEV. = 10.6 DEGREES REMARK 500 DG C 504 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT C 506 C4' - C3' - C2' ANGL. DEV. = 6.5 DEGREES REMARK 500 DT C 506 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT C 506 C5 - C6 - N1 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT C 506 C3' - O3' - P ANGL. DEV. = -11.7 DEGREES REMARK 500 DC C 507 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC C 507 C3' - O3' - P ANGL. DEV. = 12.3 DEGREES REMARK 500 DA C 508 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DT C 509 C4' - C3' - C2' ANGL. DEV. = 5.4 DEGREES REMARK 500 DT C 509 C3' - O3' - P ANGL. DEV. = 18.9 DEGREES REMARK 500 DT C 510 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 5IU C 511 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DC C 512 C2 - N3 - C4 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA C 513 C3' - O3' - P ANGL. DEV. = 9.2 DEGREES REMARK 500 DG C 514 C3' - O3' - P ANGL. DEV. = 7.2 DEGREES REMARK 500 DG C 515 C4' - C3' - C2' ANGL. DEV. = 5.5 DEGREES REMARK 500 DT C 516 C4 - C5 - C6 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC C 517 C3' - O3' - P ANGL. DEV. = 12.2 DEGREES REMARK 500 DA C 518 C3' - O3' - P ANGL. DEV. = 13.6 DEGREES REMARK 500 DG C 519 N1 - C6 - O6 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG C 519 C5 - C6 - O6 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC D 521 C3' - O3' - P ANGL. DEV. = 23.5 DEGREES REMARK 500 DT D 522 N1 - C2 - N3 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT D 522 C4 - C5 - C6 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT D 522 N3 - C2 - O2 ANGL. DEV. = -4.1 DEGREES REMARK 500 DT D 522 C3' - O3' - P ANGL. DEV. = 9.9 DEGREES REMARK 500 DG D 523 C3' - O3' - P ANGL. DEV. = 12.4 DEGREES REMARK 500 DA D 524 C5 - N7 - C8 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA D 524 C3' - O3' - P ANGL. DEV. = 7.8 DEGREES REMARK 500 DC D 525 C3' - O3' - P ANGL. DEV. = 11.2 DEGREES REMARK 500 DC D 526 C3' - O3' - P ANGL. DEV. = 8.0 DEGREES REMARK 500 DT D 527 C4 - C5 - C6 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT D 527 C6 - C5 - C7 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT D 527 C3' - O3' - P ANGL. DEV. = 9.6 DEGREES REMARK 500 DA D 529 C3' - O3' - P ANGL. DEV. = 14.4 DEGREES REMARK 500 DA D 530 C3' - O3' - P ANGL. DEV. = 14.8 DEGREES REMARK 500 DA D 531 C3' - O3' - P ANGL. DEV. = 8.7 DEGREES REMARK 500 DT D 532 N1 - C2 - N3 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT D 532 C4 - C5 - C6 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT D 532 N3 - C2 - O2 ANGL. DEV. = -3.9 DEGREES REMARK 500 DT D 532 C3' - O3' - P ANGL. DEV. = 10.2 DEGREES REMARK 500 DG D 533 C3' - C2' - C1' ANGL. DEV. = -6.2 DEGREES REMARK 500 DG D 533 N1 - C6 - O6 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG D 533 C5 - C6 - O6 ANGL. DEV. = -4.9 DEGREES REMARK 500 DC D 535 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC D 535 C3' - O3' - P ANGL. DEV. = 10.7 DEGREES REMARK 500 DC D 536 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT D 537 C4 - C5 - C6 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 138 -145.72 -95.73 REMARK 500 SER A 143 42.30 -86.87 REMARK 500 TYR A 147 -84.71 53.65 REMARK 500 THR A 162 -73.84 -44.43 REMARK 500 ARG A 164 -88.86 -63.75 REMARK 500 LEU A 167 -144.66 -137.73 REMARK 500 ASP A 173 -111.64 -116.73 REMARK 500 ASN A 174 58.60 -149.65 REMARK 500 LYS A 175 64.07 30.14 REMARK 500 CYS A 177 107.91 -43.34 REMARK 500 GLU B 301 -58.04 176.34 REMARK 500 ARG B 316 -3.46 78.36 REMARK 500 TYR B 343 -115.74 -142.03 REMARK 500 LYS B 351 -11.52 -49.72 REMARK 500 ARG B 392 0.46 -50.18 REMARK 500 GLU B 393 7.40 -68.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA C 503 0.11 SIDE CHAIN REMARK 500 DG C 505 0.06 SIDE CHAIN REMARK 500 DC C 507 0.10 SIDE CHAIN REMARK 500 DA C 518 0.08 SIDE CHAIN REMARK 500 DA D 524 0.07 SIDE CHAIN REMARK 500 DA D 529 0.07 SIDE CHAIN REMARK 500 DA D 531 0.10 SIDE CHAIN REMARK 500 DG D 533 0.06 SIDE CHAIN REMARK 500 DG D 538 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 250 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 135 SG REMARK 620 2 CYS A 138 SG 110.0 REMARK 620 3 CYS A 152 SG 118.7 109.1 REMARK 620 4 CYS A 155 SG 103.2 117.4 98.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 251 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 171 SG REMARK 620 2 CYS A 177 SG 103.1 REMARK 620 3 CYS A 187 SG 119.3 116.0 REMARK 620 4 CYS A 190 SG 118.0 95.8 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 450 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 303 SG REMARK 620 2 CYS B 306 SG 113.7 REMARK 620 3 CYS B 320 SG 110.0 106.4 REMARK 620 4 CYS B 323 SG 109.4 111.3 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 451 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 341 SG REMARK 620 2 CYS B 347 SG 109.9 REMARK 620 3 CYS B 357 SG 113.2 112.7 REMARK 620 4 CYS B 360 SG 111.8 102.3 106.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 451 DBREF 2NLL A 135 200 UNP P19793 RXRA_HUMAN 135 200 DBREF 2NLL B 300 402 UNP P10828 THB1_HUMAN 104 206 DBREF 2NLL C 502 519 PDB 2NLL 2NLL 502 519 DBREF 2NLL D 521 538 PDB 2NLL 2NLL 521 538 SEQADV 2NLL GLU B 401 UNP P10828 GLN 205 CONFLICT SEQRES 1 C 18 DC DA DG DG DT DC DA DT DT 5IU DC DA DG SEQRES 2 C 18 DG DT DC DA DG SEQRES 1 D 18 DC DT DG DA DC DC DT DG DA DA DA DT DG SEQRES 2 D 18 DA DC DC DT DG SEQRES 1 A 66 CYS ALA ILE CYS GLY ASP ARG SER SER GLY LYS HIS TYR SEQRES 2 A 66 GLY VAL TYR SER CYS GLU GLY CYS LYS GLY PHE PHE LYS SEQRES 3 A 66 ARG THR VAL ARG LYS ASP LEU THR TYR THR CYS ARG ASP SEQRES 4 A 66 ASN LYS ASP CYS LEU ILE ASP LYS ARG GLN ARG ASN ARG SEQRES 5 A 66 CYS GLN TYR CYS ARG TYR GLN LYS CYS LEU ALA MET GLY SEQRES 6 A 66 MET SEQRES 1 B 103 ASP GLU LEU CYS VAL VAL CYS GLY ASP LYS ALA THR GLY SEQRES 2 B 103 TYR HIS TYR ARG CYS ILE THR CYS GLU GLY CYS LYS GLY SEQRES 3 B 103 PHE PHE ARG ARG THR ILE GLN LYS ASN LEU HIS PRO SER SEQRES 4 B 103 TYR SER CYS LYS TYR GLU GLY LYS CYS VAL ILE ASP LYS SEQRES 5 B 103 VAL THR ARG ASN GLN CYS GLN GLU CYS ARG PHE LYS LYS SEQRES 6 B 103 CYS ILE TYR VAL GLY MET ALA THR ASP LEU VAL LEU ASP SEQRES 7 B 103 ASP SER LYS ARG LEU ALA LYS ARG LYS LEU ILE GLU GLU SEQRES 8 B 103 ASN ARG GLU LYS ARG ARG ARG GLU GLU LEU GLU LYS MODRES 2NLL 5IU C 511 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HET 5IU C 511 20 HET ZN A 250 1 HET ZN A 251 1 HET ZN B 450 1 HET ZN B 451 1 HETNAM 5IU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION FORMUL 1 5IU C9 H12 I N2 O8 P FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *236(H2 O) HELIX 1 1 GLU A 153 ARG A 164 1 12 HELIX 2 2 GLN A 188 ALA A 197 1 10 HELIX 3 3 GLU B 321 GLN B 332 1 12 HELIX 4 4 HIS B 336 SER B 338 5 3 HELIX 5 5 GLN B 358 VAL B 368 1 11 HELIX 6 6 THR B 372 LEU B 374 5 3 HELIX 7 7 ASP B 378 GLU B 401 1 24 SHEET 1 A 2 LYS A 145 HIS A 146 0 SHEET 2 A 2 VAL A 149 TYR A 150 -1 O VAL A 149 N HIS A 146 SHEET 1 B 2 TYR B 313 HIS B 314 0 SHEET 2 B 2 CYS B 317 ILE B 318 -1 O CYS B 317 N HIS B 314 LINK O3' DT C 510 P 5IU C 511 1555 1555 1.56 LINK O3' 5IU C 511 P DC C 512 1555 1555 1.57 LINK SG CYS A 135 ZN ZN A 250 1555 1555 2.36 LINK SG CYS A 138 ZN ZN A 250 1555 1555 2.34 LINK SG CYS A 152 ZN ZN A 250 1555 1555 2.26 LINK SG CYS A 155 ZN ZN A 250 1555 1555 2.33 LINK SG CYS A 171 ZN ZN A 251 1555 1555 2.32 LINK SG CYS A 177 ZN ZN A 251 1555 1555 2.33 LINK SG CYS A 187 ZN ZN A 251 1555 1555 2.31 LINK SG CYS A 190 ZN ZN A 251 1555 1555 2.31 LINK SG CYS B 303 ZN ZN B 450 1555 1555 2.26 LINK SG CYS B 306 ZN ZN B 450 1555 1555 2.37 LINK SG CYS B 320 ZN ZN B 450 1555 1555 2.38 LINK SG CYS B 323 ZN ZN B 450 1555 1555 2.32 LINK SG CYS B 341 ZN ZN B 451 1555 1555 2.31 LINK SG CYS B 347 ZN ZN B 451 1555 1555 2.28 LINK SG CYS B 357 ZN ZN B 451 1555 1555 2.33 LINK SG CYS B 360 ZN ZN B 451 1555 1555 2.26 SITE 1 AC1 4 CYS A 135 CYS A 138 CYS A 152 CYS A 155 SITE 1 AC2 4 CYS A 171 CYS A 177 CYS A 187 CYS A 190 SITE 1 AC3 4 CYS B 303 CYS B 306 CYS B 320 CYS B 323 SITE 1 AC4 4 CYS B 341 CYS B 347 CYS B 357 CYS B 360 CRYST1 40.900 65.600 125.700 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024450 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015244 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007955 0.00000