PDB Short entry for 2NMY
HEADER    HYDROLASE/HYDROLASE INHIBITOR           23-OCT-06   2NMY              
TITLE     CRYSTAL STRUCTURE ANALYSIS OF HIV-1 PROTEASE MUTANT V82A WITH A       
TITLE    2 INHIBITOR SAQUINAVIR                                                 
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PROTEASE;                                                  
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 SYNONYM: RETROPEPSIN, PR;                                            
COMPND   5 EC: 3.4.23.16;                                                       
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1;                 
SOURCE   3 ORGANISM_TAXID: 11676;                                               
SOURCE   4 GENE: GAG;                                                           
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET11A                                    
KEYWDS    HIV-1 PROTEASE, MUTANT, V82A, DIMER, HYDROLASE-HYDROLASE INHIBITOR    
KEYWDS   2 COMPLEX                                                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    Y.TIE,A.Y.KOVALEVSKY,P.BOROSS,Y.F.WANG,A.K.GHOSH,J.TOZSER,            
AUTHOR   2 R.W.HARRISON,I.T.WEBER                                               
REVDAT   5   20-OCT-21 2NMY    1       COMPND REMARK SEQADV HETNAM              
REVDAT   5 2                   1       HETSYN LINK                              
REVDAT   4   18-OCT-17 2NMY    1       REMARK                                   
REVDAT   3   13-JUL-11 2NMY    1       VERSN                                    
REVDAT   2   24-FEB-09 2NMY    1       VERSN                                    
REVDAT   1   13-MAR-07 2NMY    0                                                
JRNL        AUTH   Y.TIE,A.Y.KOVALEVSKY,P.BOROSS,Y.F.WANG,A.K.GHOSH,J.TOZSER,   
JRNL        AUTH 2 R.W.HARRISON,I.T.WEBER                                       
JRNL        TITL   ATOMIC RESOLUTION CRYSTAL STRUCTURES OF HIV-1 PROTEASE AND   
JRNL        TITL 2 MUTANTS V82A AND I84V WITH SAQUINAVIR.                       
JRNL        REF    PROTEINS                      V.  67   232 2007              
JRNL        REFN                   ISSN 0887-3585                               
JRNL        PMID   17243183                                                     
JRNL        DOI    10.1002/PROT.21304                                           
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.10 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : SHELXL-97                                            
REMARK   3   AUTHORS     : G.M.SHELDRICK                                        
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 10.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 89.2                           
REMARK   3   CROSS-VALIDATION METHOD           : FREE R                         
REMARK   3   FREE R VALUE TEST SET SELECTION   : RANDOM                         
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (NO CUTOFF).                         
REMARK   3   R VALUE   (WORKING + TEST SET, NO CUTOFF) : 0.151                  
REMARK   3   R VALUE          (WORKING SET, NO CUTOFF) : 0.149                  
REMARK   3   FREE R VALUE                  (NO CUTOFF) : 0.181                  
REMARK   3   FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000                  
REMARK   3   FREE R VALUE TEST SET COUNT   (NO CUTOFF) : 4520                   
REMARK   3   TOTAL NUMBER OF REFLECTIONS   (NO CUTOFF) : NULL                   
REMARK   3                                                                      
REMARK   3  FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F).                     
REMARK   3   R VALUE   (WORKING + TEST SET, F>4SIG(F)) : 0.130                  
REMARK   3   R VALUE          (WORKING SET, F>4SIG(F)) : 0.128                  
REMARK   3   FREE R VALUE                  (F>4SIG(F)) : 0.160                  
REMARK   3   FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000                  
REMARK   3   FREE R VALUE TEST SET COUNT   (F>4SIG(F)) : 3318                   
REMARK   3   TOTAL NUMBER OF REFLECTIONS   (F>4SIG(F)) : 65934                  
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS      : 1508                                          
REMARK   3   NUCLEIC ACID ATOMS : 0                                             
REMARK   3   HETEROGEN ATOMS    : 57                                            
REMARK   3   SOLVENT ATOMS      : 219                                           
REMARK   3                                                                      
REMARK   3  MODEL REFINEMENT.                                                   
REMARK   3   OCCUPANCY SUM OF NON-HYDROGEN ATOMS      : 1779.0                  
REMARK   3   OCCUPANCY SUM OF HYDROGEN ATOMS          : 1660.0                  
REMARK   3   NUMBER OF DISCRETELY DISORDERED RESIDUES : 28                      
REMARK   3   NUMBER OF LEAST-SQUARES PARAMETERS       : 17522                   
REMARK   3   NUMBER OF RESTRAINTS                     : 22494                   
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM RESTRAINT TARGET VALUES.                        
REMARK   3   BOND LENGTHS                         (A) : 0.020                   
REMARK   3   ANGLE DISTANCES                      (A) : 0.045                   
REMARK   3   SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000                   
REMARK   3   DISTANCES FROM RESTRAINT PLANES      (A) : 0.029                   
REMARK   3   ZERO CHIRAL VOLUMES               (A**3) : 0.080                   
REMARK   3   NON-ZERO CHIRAL VOLUMES           (A**3) : 0.107                   
REMARK   3   ANTI-BUMPING DISTANCE RESTRAINTS     (A) : 0.077                   
REMARK   3   RIGID-BOND ADP COMPONENTS         (A**2) : 0.005                   
REMARK   3   SIMILAR ADP COMPONENTS            (A**2) : 0.055                   
REMARK   3   APPROXIMATELY ISOTROPIC ADPS      (A**2) : 0.110                   
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED: NULL                                                  
REMARK   3                                                                      
REMARK   3  STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER                      
REMARK   3   SPECIAL CASE: NULL                                                 
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2NMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-06.                  
REMARK 100 THE DEPOSITION ID IS D_1000040058.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 11-NOV-04                          
REMARK 200  TEMPERATURE           (KELVIN) : 90.0                               
REMARK 200  PH                             : 4.6                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 22-ID                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0                                
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARRESEARCH                        
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : MAR                                
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 95683                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.100                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 94.6                               
REMARK 200  DATA REDUNDANCY                : 4.700                              
REMARK 200  R MERGE                    (I) : 0.11000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 10.5000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.14                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 64.5                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 1.80                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.36000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.000                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: AMORE                                                 
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 57.40                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CHLORIDE 0.6M, DMSO 10%, SODIUM   
REMARK 280  ACETATE BUFFER PH 4.6, VAPOR DIFFUSION, HANGING DROP,               
REMARK 280  TEMPERATURE 298K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z                                                 
REMARK 290       3555   -X+1/2,Y+1/2,-Z                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000       29.99400            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       43.73200            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       29.99400            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       43.73200            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER IN THE ASYMMETRY UNIT.    
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 5730 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 9780 ANGSTROM**2                        
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH A1216  LIES ON A SPECIAL POSITION.                          
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ARG A  41   CG  -  CD  -  NE  ANGL. DEV. =  13.9 DEGREES          
REMARK 500    ARG A  41   CD  -  NE  -  CZ  ANGL. DEV. =   9.2 DEGREES          
REMARK 500    ARG A  41   NE  -  CZ  -  NH1 ANGL. DEV. =   6.3 DEGREES          
REMARK 500    ILE A  50   CA  -  C   -  N   ANGL. DEV. =  13.8 DEGREES          
REMARK 500    ARG A  57   CD  -  NE  -  CZ  ANGL. DEV. =  15.0 DEGREES          
REMARK 500    ARG A  57   NE  -  CZ  -  NH1 ANGL. DEV. =  -4.3 DEGREES          
REMARK 500    ASN A  98   CB  -  CG  -  OD1 ANGL. DEV. =  18.4 DEGREES          
REMARK 500    GLU B 134   OE1 -  CD  -  OE2 ANGL. DEV. =  -8.2 DEGREES          
REMARK 500    LYS B 145   CD  -  CE  -  NZ  ANGL. DEV. =  16.5 DEGREES          
REMARK 500    GLY B 151   C   -  N   -  CA  ANGL. DEV. = -18.3 DEGREES          
REMARK 500    ARG B 187   NE  -  CZ  -  NH1 ANGL. DEV. =   3.2 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 600                                                                      
REMARK 600 HETEROGEN                                                            
REMARK 600                                                                      
REMARK 600 THE INHIBITOR ROC IS A HYDROXYETHYLAMINE CONTAINING                  
REMARK 600 TRANSITION STATE MIMETIC.                                            
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 503  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A  60   O                                                      
REMARK 620 2 HOH A1057   O    96.8                                              
REMARK 620 3 HOH A1080   O    75.0 168.5                                        
REMARK 620 4 HOH A1120   O    99.4  71.1 101.8                                  
REMARK 620 5 HOH A1157   O   101.4 100.2  89.5 158.3                            
REMARK 620 N                    1     2     3     4                             
REMARK 630                                                                      
REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR                                
REMARK 630 MOLECULE NAME: (2S)-N-[(2S,3R)-4-[(2S,3S,4AS,8AS)-3-(TERT-           
REMARK 630 BUTYLCARBAMOYL)-3,4,4A,5,6,7,8,8A-OCTAHYDRO-1H-ISOQUINOLIN-2-YL]-3-  
REMARK 630 HYDROXY-1 -PHENYL-BUTAN-2-YL]-2-(QUINOLIN-2-YLCARBONYLAMINO)         
REMARK 630 BUTANEDIAMIDE                                                        
REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 630  SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                           
REMARK 630                                                                      
REMARK 630   M RES C SSSEQI                                                     
REMARK 630     ROC A   401                                                      
REMARK 630 SOURCE: NULL                                                         
REMARK 630 TAXONOMY: NULL                                                       
REMARK 630 SUBCOMP:    QNC ASN HP0 NTB                                          
REMARK 630 DETAILS: NULL                                                        
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 501                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 502                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 503                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ROC A 401                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2NMW   RELATED DB: PDB                                   
REMARK 900 WT-SAQUINAVIR COMPLEX                                                
REMARK 900 RELATED ID: 2NMZ   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 2NNK   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 2NNP   RELATED DB: PDB                                   
DBREF  2NMY A    1    99  UNP    P04587   POL_HV1B5      500    598             
DBREF  2NMY B  101   199  UNP    P04587   POL_HV1B5      500    598             
SEQADV 2NMY LYS A    7  UNP  P04587    GLN   506 ENGINEERED MUTATION            
SEQADV 2NMY ILE A   33  UNP  P04587    LEU   532 ENGINEERED MUTATION            
SEQADV 2NMY ILE A   63  UNP  P04587    LEU   562 ENGINEERED MUTATION            
SEQADV 2NMY ALA A   67  UNP  P04587    CYS   566 ENGINEERED MUTATION            
SEQADV 2NMY ALA A   82  UNP  P04587    VAL   581 ENGINEERED MUTATION            
SEQADV 2NMY ALA A   95  UNP  P04587    CYS   594 ENGINEERED MUTATION            
SEQADV 2NMY LYS B  107  UNP  P04587    GLN   506 ENGINEERED MUTATION            
SEQADV 2NMY ILE B  133  UNP  P04587    LEU   532 ENGINEERED MUTATION            
SEQADV 2NMY ILE B  163  UNP  P04587    LEU   562 ENGINEERED MUTATION            
SEQADV 2NMY ALA B  167  UNP  P04587    CYS   566 ENGINEERED MUTATION            
SEQADV 2NMY ALA B  182  UNP  P04587    VAL   581 ENGINEERED MUTATION            
SEQADV 2NMY ALA B  195  UNP  P04587    CYS   594 ENGINEERED MUTATION            
SEQRES   1 A   99  PRO GLN ILE THR LEU TRP LYS ARG PRO LEU VAL THR ILE          
SEQRES   2 A   99  LYS ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR          
SEQRES   3 A   99  GLY ALA ASP ASP THR VAL ILE GLU GLU MET SER LEU PRO          
SEQRES   4 A   99  GLY ARG TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY          
SEQRES   5 A   99  PHE ILE LYS VAL ARG GLN TYR ASP GLN ILE ILE ILE GLU          
SEQRES   6 A   99  ILE ALA GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY          
SEQRES   7 A   99  PRO THR PRO ALA ASN ILE ILE GLY ARG ASN LEU LEU THR          
SEQRES   8 A   99  GLN ILE GLY ALA THR LEU ASN PHE                              
SEQRES   1 B   99  PRO GLN ILE THR LEU TRP LYS ARG PRO LEU VAL THR ILE          
SEQRES   2 B   99  LYS ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR          
SEQRES   3 B   99  GLY ALA ASP ASP THR VAL ILE GLU GLU MET SER LEU PRO          
SEQRES   4 B   99  GLY ARG TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY          
SEQRES   5 B   99  PHE ILE LYS VAL ARG GLN TYR ASP GLN ILE ILE ILE GLU          
SEQRES   6 B   99  ILE ALA GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY          
SEQRES   7 B   99  PRO THR PRO ALA ASN ILE ILE GLY ARG ASN LEU LEU THR          
SEQRES   8 B   99  GLN ILE GLY ALA THR LEU ASN PHE                              
HET     CL  A 502       1                                                       
HET     NA  A 503       1                                                       
HET    SO4  A 504       5                                                       
HET    ROC  A 401      98                                                       
HET     CL  B 501       1                                                       
HETNAM      CL CHLORIDE ION                                                     
HETNAM      NA SODIUM ION                                                       
HETNAM     SO4 SULFATE ION                                                      
HETNAM     ROC (2S)-N-[(2S,3R)-4-[(2S,3S,4AS,8AS)-3-(TERT-                      
HETNAM   2 ROC  BUTYLCARBAMOYL)-3,4,4A,5,6,7,8,8A-OCTAHYDRO-1H-                 
HETNAM   3 ROC  ISOQUINOLIN-2-YL]-3-HYDROXY-1 -PHENYL-BUTAN-2-YL]-2-            
HETNAM   4 ROC  (QUINOLIN-2-YLCARBONYLAMINO)BUTANEDIAMIDE                       
HETSYN     ROC FORTOVASE; SAQUINAVIR; RO 31-8959                                
FORMUL   3   CL    2(CL 1-)                                                     
FORMUL   4   NA    NA 1+                                                        
FORMUL   5  SO4    O4 S 2-                                                      
FORMUL   6  ROC    C38 H50 N6 O5                                                
FORMUL   8  HOH   *219(H2 O)                                                    
HELIX    1   1 GLY A   86  THR A   91  1                                   6    
HELIX    2   2 GLN A   92  GLY A   94  5                                   3    
HELIX    3   3 GLY B  186  THR B  191  1                                   6    
SHEET    1   A 4 GLN A   2  ILE A   3  0                                        
SHEET    2   A 4 THR B 196  ASN B 198 -1  O  LEU B 197   N  ILE A   3           
SHEET    3   A 4 THR A  96  ASN A  98 -1  N  ASN A  98   O  THR B 196           
SHEET    4   A 4 GLN B 102  ILE B 103 -1  O  ILE B 103   N  LEU A  97           
SHEET    1   B 8 LYS A  43  GLY A  49  0                                        
SHEET    2   B 8 GLY A  52  ILE A  66 -1  O  GLN A  58   N  LYS A  43           
SHEET    3   B 8 HIS A  69  VAL A  77 -1  O  HIS A  69   N  ILE A  66           
SHEET    4   B 8 VAL A  32  ILE A  33  1  N  ILE A  33   O  LEU A  76           
SHEET    5   B 8 ILE A  84  ILE A  85 -1  O  ILE A  84   N  VAL A  32           
SHEET    6   B 8 GLN A  18  LEU A  24  1  N  LEU A  23   O  ILE A  85           
SHEET    7   B 8 LEU A  10  ILE A  15 -1  N  ILE A  13   O  LYS A  20           
SHEET    8   B 8 GLY A  52  ILE A  66 -1  O  GLU A  65   N  LYS A  14           
SHEET    1   C 8 LYS B 143  GLY B 149  0                                        
SHEET    2   C 8 GLY B 152  ILE B 166 -1  O  GLN B 158   N  LYS B 143           
SHEET    3   C 8 HIS B 169  VAL B 177 -1  O  HIS B 169   N  ILE B 166           
SHEET    4   C 8 VAL B 132  ILE B 133  1  N  ILE B 133   O  LEU B 176           
SHEET    5   C 8 ILE B 184  ILE B 185 -1  O  ILE B 184   N  VAL B 132           
SHEET    6   C 8 GLN B 118  LEU B 124  1  N  LEU B 123   O  ILE B 185           
SHEET    7   C 8 LEU B 110  ILE B 115 -1  N  ILE B 113   O  LYS B 120           
SHEET    8   C 8 GLY B 152  ILE B 166 -1  O  GLU B 165   N  LYS B 114           
LINK         O   ASP A  60                NA    NA A 503     1555   1555  2.45  
LINK        NA    NA A 503                 O   HOH A1057     1555   1555  2.41  
LINK        NA    NA A 503                 O   HOH A1080     1555   1555  2.46  
LINK        NA    NA A 503                 O   HOH A1120     1555   1555  2.23  
LINK        NA    NA A 503                 O   HOH A1157     1555   1555  2.15  
SITE     1 AC1  1 TRP B 106                                                     
SITE     1 AC2  4 THR A  74  ASN A  88  HOH A1141  ARG B 141                    
SITE     1 AC3  5 ASP A  60  HOH A1057  HOH A1080  HOH A1120                    
SITE     2 AC3  5 HOH A1157                                                     
SITE     1 AC4  7 MET A  46  PHE A  53  HOH A1171  HOH A1213                    
SITE     2 AC4  7 ILE B 172  GLY B 173  GLN B 192                               
SITE     1 AC5 23 ARG A   8  ASP A  25  GLY A  27  ASP A  29                    
SITE     2 AC5 23 ASP A  30  GLY A  48  GLY A  49  ILE A  50                    
SITE     3 AC5 23 ILE A  84  HOH A1006  HOH A1018  HOH A1127                    
SITE     4 AC5 23 ARG B 108  ASP B 125  GLY B 127  ASP B 129                    
SITE     5 AC5 23 ASP B 130  GLY B 148  GLY B 149  ILE B 150                    
SITE     6 AC5 23 PRO B 181  ILE B 184  HOH B1060                               
CRYST1   59.988   87.464   47.190  90.00  90.00  90.00 P 21 21 2     8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.016670  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.011433  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.021191        0.00000