PDB Short entry for 2NRA HEADER REPLICATION/DNA 01-NOV-06 2NRA TITLE CRYSTAL STRUCTURE OF PI INITIATOR PROTEIN IN COMPLEX WITH ITERON DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*AP*AP*CP*AP*TP*GP*AP*GP*AP*GP*CP*TP*TP*AP*GP*TP*AP COMPND 3 *CP*GP*TP*CP*T)-3'; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: ITERON OLIGONUCLEOTIDE; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*GP*AP*CP*GP*TP*AP*CP*TP*AP*AP*GP*CP*TP*CP*TP*CP*AP*TP COMPND 9 *GP*TP*TP*CP*T)-3'; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: ITERON OLIGONUCLEOTIDE; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: PI PROTEIN; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: REPLICATION INITIATION PROTEIN; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 7 ORGANISM_TAXID: 562; SOURCE 8 GENE: PIR; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI K12; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PTXB1-INTEIN KEYWDS PROTEIN-DNA COMPLEX, DNA REPLICATION, REPLICATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.K.SWAN,D.BASTIA,C.DAVIES REVDAT 6 27-DEC-23 2NRA 1 REMARK REVDAT 5 20-OCT-21 2NRA 1 SEQADV REVDAT 4 13-JUL-11 2NRA 1 VERSN REVDAT 3 24-FEB-09 2NRA 1 VERSN REVDAT 2 01-MAY-07 2NRA 1 JRNL REVDAT 1 14-NOV-06 2NRA 0 JRNL AUTH M.K.SWAN,D.BASTIA,C.DAVIES JRNL TITL CRYSTAL STRUCTURE OF PI INITIATOR PROTEIN-ITERON COMPLEX OF JRNL TITL 2 PLASMID R6K: IMPLICATIONS FOR INITIATION OF PLASMID DNA JRNL TITL 3 REPLICATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 18481 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 17124167 JRNL DOI 10.1073/PNAS.0609046103 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 593 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 836 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2000 REMARK 3 NUCLEIC ACID ATOMS : 936 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 106.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.424 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.355 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.311 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3083 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4355 ; 1.854 ; 2.361 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 250 ; 8.708 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;33.866 ;23.953 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 384 ;23.672 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;16.868 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 495 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1951 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1366 ; 0.254 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1968 ; 0.326 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 98 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.248 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.349 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1282 ; 0.678 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2013 ; 1.199 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2310 ; 1.290 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2342 ; 2.193 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 9 C 104 REMARK 3 ORIGIN FOR THE GROUP (A): -14.6190 95.9350 44.3380 REMARK 3 T TENSOR REMARK 3 T11: 0.0653 T22: 0.0367 REMARK 3 T33: -0.0933 T12: 0.0168 REMARK 3 T13: 0.0891 T23: -0.1892 REMARK 3 L TENSOR REMARK 3 L11: 3.8416 L22: 5.0290 REMARK 3 L33: 3.7299 L12: 1.4800 REMARK 3 L13: -0.2667 L23: -0.7873 REMARK 3 S TENSOR REMARK 3 S11: -0.0475 S12: -0.2100 S13: 0.0690 REMARK 3 S21: 0.0677 S22: 0.3640 S23: -0.2343 REMARK 3 S31: -0.1722 S32: -0.0651 S33: -0.3165 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 113 C 268 REMARK 3 ORIGIN FOR THE GROUP (A): -21.4970 101.4960 33.6590 REMARK 3 T TENSOR REMARK 3 T11: 0.0666 T22: 0.0403 REMARK 3 T33: -0.1510 T12: -0.0409 REMARK 3 T13: 0.1350 T23: -0.0471 REMARK 3 L TENSOR REMARK 3 L11: 3.0581 L22: 3.4176 REMARK 3 L33: 5.2962 L12: 0.6358 REMARK 3 L13: 2.2063 L23: -0.7597 REMARK 3 S TENSOR REMARK 3 S11: -0.4222 S12: 0.1669 S13: 0.2960 REMARK 3 S21: -0.4495 S22: 0.6512 S23: 0.2544 REMARK 3 S31: -0.5293 S32: -0.0264 S33: -0.2290 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): -26.5210 81.5790 26.4460 REMARK 3 T TENSOR REMARK 3 T11: 0.4555 T22: 0.5260 REMARK 3 T33: 0.0045 T12: -0.0897 REMARK 3 T13: -0.0958 T23: 0.0922 REMARK 3 L TENSOR REMARK 3 L11: 0.6586 L22: 1.4674 REMARK 3 L33: 1.4007 L12: 0.6333 REMARK 3 L13: 0.5823 L23: 1.4319 REMARK 3 S TENSOR REMARK 3 S11: 0.2570 S12: 0.2475 S13: -0.3114 REMARK 3 S21: -0.7934 S22: 0.3078 S23: 0.0893 REMARK 3 S31: 0.9141 S32: 0.1829 S33: -0.5649 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 25 B 46 REMARK 3 ORIGIN FOR THE GROUP (A): -27.7700 85.2340 21.6390 REMARK 3 T TENSOR REMARK 3 T11: 0.4062 T22: 0.3660 REMARK 3 T33: -0.0091 T12: -0.1998 REMARK 3 T13: -0.0730 T23: 0.0856 REMARK 3 L TENSOR REMARK 3 L11: 0.3133 L22: 1.8006 REMARK 3 L33: 2.1260 L12: 0.5999 REMARK 3 L13: 0.6199 L23: 1.9527 REMARK 3 S TENSOR REMARK 3 S11: 0.1318 S12: 0.2926 S13: -0.4157 REMARK 3 S21: -0.6692 S22: 0.4076 S23: 0.3265 REMARK 3 S31: 0.4379 S32: 0.1679 S33: -0.5394 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE SINGLE WAVELENGTH DATA WERE USED FOR REFINEMENT. THE MAD DATA REMARK 3 WERE USED TO REMARK 3 SOLVE THE INITIAL STRUCTURE. REMARK 4 REMARK 4 2NRA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-05; 08-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; NSLS REMARK 200 BEAMLINE : 22-ID; X12B REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.076; 0.9201, 0.9208, 0.9184 REMARK 200 MONOCHROMATOR : SI-220; SI-111 REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; ADSC REMARK 200 QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12173 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 35.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 44.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : 0.44900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% POLYETHYLENE GLYCOL 8000, 50 MM REMARK 280 MGCL2 AND 100 MM NH4H2PO4, PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.06667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.13333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.10000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 115.16667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.03333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.06667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 92.13333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 115.16667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 69.10000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 23.03333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 ARG C 2 REMARK 465 LEU C 3 REMARK 465 LYS C 4 REMARK 465 VAL C 5 REMARK 465 MET C 6 REMARK 465 MET C 7 REMARK 465 ASP C 8 REMARK 465 LEU C 105 REMARK 465 LEU C 106 REMARK 465 SER C 107 REMARK 465 THR C 108 REMARK 465 ALA C 109 REMARK 465 LYS C 110 REMARK 465 ASN C 111 REMARK 465 SER C 112 REMARK 465 GLU C 269 REMARK 465 PHE C 270 REMARK 465 SER C 271 REMARK 465 GLY C 272 REMARK 465 ASP C 273 REMARK 465 LYS C 274 REMARK 465 ASP C 275 REMARK 465 ASP C 276 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL C 9 CG1 CG2 REMARK 470 ASN C 10 CG OD1 ND2 REMARK 470 LYS C 12 CG CD CE NZ REMARK 470 LYS C 46 CG CD CE NZ REMARK 470 ASP C 94 CG OD1 OD2 REMARK 470 ASP C 95 CG OD1 OD2 REMARK 470 ILE C 96 CG1 CG2 CD1 REMARK 470 ILE C 97 CG1 CG2 CD1 REMARK 470 LYS C 101 CG CD CE NZ REMARK 470 PHE C 185 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 186 CG CD CE NZ REMARK 470 LYS C 187 CG CD CE NZ REMARK 470 LYS C 188 CG CD CE NZ REMARK 470 ARG C 254 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 DC B 26 O PRO C 128 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA B 32 O3' DA B 32 C3' -0.052 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 1 C3' - O3' - P ANGL. DEV. = 7.2 DEGREES REMARK 500 DA A 5 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT A 6 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG A 7 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG A 9 O4' - C1' - N9 ANGL. DEV. = 6.5 DEGREES REMARK 500 DA A 10 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DG A 11 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 DC A 12 C1' - O4' - C4' ANGL. DEV. = -9.2 DEGREES REMARK 500 DC A 12 O4' - C1' - N1 ANGL. DEV. = 6.3 DEGREES REMARK 500 DC A 12 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DT A 13 C6 - C5 - C7 ANGL. DEV. = -5.1 DEGREES REMARK 500 DG A 16 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT A 17 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA A 18 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 DC A 19 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG A 20 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT A 21 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT A 23 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT B 28 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA B 29 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DC B 30 C1' - O4' - C4' ANGL. DEV. = -8.9 DEGREES REMARK 500 DC B 30 O4' - C1' - N1 ANGL. DEV. = 6.9 DEGREES REMARK 500 DA B 33 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DC B 37 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT B 38 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA B 40 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DG B 42 C1' - O4' - C4' ANGL. DEV. = -8.8 DEGREES REMARK 500 DG B 42 O4' - C1' - N9 ANGL. DEV. = 7.5 DEGREES REMARK 500 DT B 44 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC B 45 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT B 46 C1' - O4' - C4' ANGL. DEV. = -6.8 DEGREES REMARK 500 DT B 46 O4' - C1' - N1 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 10 178.64 67.78 REMARK 500 GLU C 50 5.27 -51.59 REMARK 500 ARG C 51 -59.04 63.52 REMARK 500 PRO C 143 -3.51 -56.06 REMARK 500 SER C 146 55.52 -159.14 REMARK 500 LEU C 148 117.31 -36.66 REMARK 500 LYS C 152 -42.19 -29.59 REMARK 500 SER C 171 -58.10 -29.91 REMARK 500 HIS C 181 36.51 -94.64 REMARK 500 LYS C 187 -95.04 -26.75 REMARK 500 PHE C 207 -155.04 -131.69 REMARK 500 ASP C 208 102.00 157.00 REMARK 500 LYS C 209 13.87 57.05 REMARK 500 ILE C 241 99.62 -66.97 REMARK 500 LYS C 251 -88.97 -30.50 REMARK 500 GLU C 252 33.32 78.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU C 114 GLU C 115 -147.01 REMARK 500 SER C 146 SER C 147 -121.86 REMARK 500 REMARK 500 REMARK: NULL DBREF 2NRA C 1 276 UNP P03067 PIR_ECOLI 1 276 DBREF 2NRA A 1 23 PDB 2NRA 2NRA 1 23 DBREF 2NRA B 24 46 PDB 2NRA 2NRA 24 46 SEQADV 2NRA LEU C 42 UNP P03067 PRO 42 ENGINEERED MUTATION SEQADV 2NRA LEU C 106 UNP P03067 PRO 106 ENGINEERED MUTATION SEQADV 2NRA SER C 107 UNP P03067 PHE 107 ENGINEERED MUTATION SEQADV 2NRA SER C 113 UNP P03067 PRO 113 ENGINEERED MUTATION SEQRES 1 A 23 DG DA DA DC DA DT DG DA DG DA DG DC DT SEQRES 2 A 23 DT DA DG DT DA DC DG DT DC DT SEQRES 1 B 23 DG DA DC DG DT DA DC DT DA DA DG DC DT SEQRES 2 B 23 DC DT DC DA DT DG DT DT DC DT SEQRES 1 C 276 MET ARG LEU LYS VAL MET MET ASP VAL ASN LYS LYS THR SEQRES 2 C 276 LYS ILE ARG HIS ARG ASN GLU LEU ASN HIS THR LEU ALA SEQRES 3 C 276 GLN LEU PRO LEU PRO ALA LYS ARG VAL MET TYR MET ALA SEQRES 4 C 276 LEU ALA LEU ILE ASP SER LYS GLU PRO LEU GLU ARG GLY SEQRES 5 C 276 ARG VAL PHE LYS ILE ARG ALA GLU ASP LEU ALA ALA LEU SEQRES 6 C 276 ALA LYS ILE THR PRO SER LEU ALA TYR ARG GLN LEU LYS SEQRES 7 C 276 GLU GLY GLY LYS LEU LEU GLY ALA SER LYS ILE SER LEU SEQRES 8 C 276 ARG GLY ASP ASP ILE ILE ALA LEU ALA LYS GLU LEU ASN SEQRES 9 C 276 LEU LEU SER THR ALA LYS ASN SER SER GLU GLU LEU ASP SEQRES 10 C 276 LEU ASN ILE ILE GLU TRP ILE ALA TYR SER PRO ASP GLU SEQRES 11 C 276 GLY TYR LEU SER LEU LYS PHE THR ARG THR ILE GLU PRO SEQRES 12 C 276 TYR ILE SER SER LEU ILE GLY LYS LYS ASN LYS PHE THR SEQRES 13 C 276 THR GLN LEU LEU THR ALA SER LEU ARG LEU SER SER GLN SEQRES 14 C 276 TYR SER SER SER LEU TYR GLN LEU ILE ARG LYS HIS TYR SEQRES 15 C 276 SER ASN PHE LYS LYS LYS ASN TYR PHE ILE ILE SER VAL SEQRES 16 C 276 ASP GLU LEU LYS GLU GLU LEU ILE ALA TYR THR PHE ASP SEQRES 17 C 276 LYS ASP GLY ASN ILE GLU TYR LYS TYR PRO ASP PHE PRO SEQRES 18 C 276 ILE PHE LYS ARG ASP VAL LEU ASN LYS ALA ILE ALA GLU SEQRES 19 C 276 ILE LYS LYS LYS THR GLU ILE SER PHE VAL GLY PHE THR SEQRES 20 C 276 VAL HIS GLU LYS GLU GLY ARG LYS ILE SER LYS LEU LYS SEQRES 21 C 276 PHE GLU PHE VAL VAL ASP GLU ASP GLU PHE SER GLY ASP SEQRES 22 C 276 LYS ASP ASP HELIX 1 1 LEU C 21 LEU C 28 1 8 HELIX 2 2 PRO C 29 LEU C 42 1 14 HELIX 3 3 ALA C 59 LYS C 67 1 9 HELIX 4 4 THR C 69 SER C 87 1 19 HELIX 5 5 ASP C 94 LEU C 103 1 10 HELIX 6 6 ILE C 141 ILE C 145 5 5 HELIX 7 7 LYS C 151 ASN C 153 5 3 HELIX 8 8 LEU C 160 LEU C 166 1 7 HELIX 9 9 SER C 168 HIS C 181 1 14 HELIX 10 10 VAL C 195 ILE C 203 1 9 HELIX 11 11 ASP C 219 VAL C 227 1 9 HELIX 12 12 VAL C 227 THR C 239 1 13 SHEET 1 A 2 LYS C 14 ARG C 18 0 SHEET 2 A 2 PHE C 155 LEU C 159 -1 O GLN C 158 N ILE C 15 SHEET 1 B 3 PHE C 55 ARG C 58 0 SHEET 2 B 3 TYR C 132 PHE C 137 -1 O LEU C 133 N ILE C 57 SHEET 3 B 3 ILE C 121 SER C 127 -1 N ALA C 125 O SER C 134 SHEET 1 C 3 ASN C 189 SER C 194 0 SHEET 2 C 3 LYS C 258 VAL C 265 -1 O LEU C 259 N ILE C 193 SHEET 3 C 3 ILE C 241 GLU C 250 -1 N HIS C 249 O LYS C 258 SHEET 1 D 2 TYR C 205 THR C 206 0 SHEET 2 D 2 GLU C 214 TYR C 215 -1 O GLU C 214 N THR C 206 CISPEP 1 ARG C 92 GLY C 93 0 -0.13 CISPEP 2 GLY C 150 LYS C 151 0 -12.56 CRYST1 125.900 125.900 138.200 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007943 0.004586 0.000000 0.00000 SCALE2 0.000000 0.009172 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007236 0.00000