PDB Short entry for 2NTE HEADER ANTITUMOR PROTEIN 07-NOV-06 2NTE TITLE CRYSTAL STRUCTURE OF THE BARD1 BRCT DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BRCT DOMAIN; COMPND 5 SYNONYM: BARD-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BARD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-6H KEYWDS BRCT, RING FINGER, BRCA1, ZINC-BINDING PROTEIN, UBIQUITIN LIGASE, KEYWDS 2 ANTITUMOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.BIRRANE,A.K.VARMA,A.SONI,J.A.A.LADIAS REVDAT 5 27-DEC-23 2NTE 1 REMARK LINK REVDAT 4 13-JUL-11 2NTE 1 VERSN REVDAT 3 24-FEB-09 2NTE 1 VERSN REVDAT 2 18-SEP-07 2NTE 1 JRNL REVDAT 1 12-JUN-07 2NTE 0 JRNL AUTH G.BIRRANE,A.K.VARMA,A.SONI,J.A.LADIAS JRNL TITL CRYSTAL STRUCTURE OF THE BARD1 BRCT DOMAINS. JRNL REF BIOCHEMISTRY V. 46 7706 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17550235 JRNL DOI 10.1021/BI700323T REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 36401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1910 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2018 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3382 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.346 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3489 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2465 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4714 ; 1.865 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6001 ; 0.987 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 417 ; 6.984 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;36.720 ;23.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 626 ;15.017 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.555 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 512 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3772 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 696 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 734 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2488 ; 0.205 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1684 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1847 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 197 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.553 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 55 ; 0.254 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2644 ; 1.527 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 840 ; 0.363 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3402 ; 1.860 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1637 ; 2.808 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1312 ; 3.910 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 568 A 658 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0600 11.8770 38.0030 REMARK 3 T TENSOR REMARK 3 T11: -0.2062 T22: -0.2139 REMARK 3 T33: -0.1741 T12: -0.0570 REMARK 3 T13: 0.0168 T23: -0.0729 REMARK 3 L TENSOR REMARK 3 L11: 3.9002 L22: 2.9312 REMARK 3 L33: 4.9465 L12: 1.0462 REMARK 3 L13: -2.1764 L23: 0.4489 REMARK 3 S TENSOR REMARK 3 S11: 0.0879 S12: -0.2475 S13: 0.1542 REMARK 3 S21: -0.0361 S22: -0.1242 S23: 0.0949 REMARK 3 S31: -0.4903 S32: 0.2049 S33: 0.0363 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 659 A 709 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2420 -2.4210 19.0840 REMARK 3 T TENSOR REMARK 3 T11: -0.2087 T22: -0.1812 REMARK 3 T33: -0.1351 T12: -0.0334 REMARK 3 T13: 0.0134 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 2.0368 L22: 2.3500 REMARK 3 L33: 5.4657 L12: 0.5311 REMARK 3 L13: -1.8189 L23: 0.6890 REMARK 3 S TENSOR REMARK 3 S11: 0.2583 S12: -0.1828 S13: 0.2677 REMARK 3 S21: 0.0755 S22: -0.1609 S23: -0.0351 REMARK 3 S31: -0.3078 S32: 0.1957 S33: -0.0974 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 710 A 739 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0170 -13.0940 15.6230 REMARK 3 T TENSOR REMARK 3 T11: -0.2142 T22: -0.1926 REMARK 3 T33: -0.1834 T12: -0.0108 REMARK 3 T13: -0.0118 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 2.5671 L22: 5.5102 REMARK 3 L33: 3.5146 L12: -0.4387 REMARK 3 L13: 0.2191 L23: -0.8391 REMARK 3 S TENSOR REMARK 3 S11: 0.1082 S12: -0.1207 S13: -0.0665 REMARK 3 S21: -0.1494 S22: -0.2132 S23: 0.1743 REMARK 3 S31: 0.0695 S32: -0.0921 S33: 0.1051 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 740 A 777 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5280 -1.9730 12.0820 REMARK 3 T TENSOR REMARK 3 T11: -0.1214 T22: -0.2165 REMARK 3 T33: -0.1072 T12: 0.0480 REMARK 3 T13: -0.0540 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 2.9379 L22: 7.0654 REMARK 3 L33: 5.6577 L12: -0.0020 REMARK 3 L13: -0.8101 L23: 3.3439 REMARK 3 S TENSOR REMARK 3 S11: 0.1782 S12: 0.0869 S13: 0.3322 REMARK 3 S21: -0.7416 S22: -0.3252 S23: 0.4495 REMARK 3 S31: -0.6332 S32: -0.3948 S33: 0.1469 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 569 B 641 REMARK 3 ORIGIN FOR THE GROUP (A): 41.0900 15.9440 10.6140 REMARK 3 T TENSOR REMARK 3 T11: -0.0317 T22: -0.2493 REMARK 3 T33: -0.1768 T12: -0.0635 REMARK 3 T13: 0.0360 T23: -0.0427 REMARK 3 L TENSOR REMARK 3 L11: 1.6981 L22: 5.6688 REMARK 3 L33: 7.7337 L12: 0.7209 REMARK 3 L13: 2.2826 L23: 4.4468 REMARK 3 S TENSOR REMARK 3 S11: -0.1332 S12: 0.0731 S13: 0.1006 REMARK 3 S21: -0.4507 S22: 0.0026 S23: 0.0378 REMARK 3 S31: -1.0507 S32: 0.0868 S33: 0.1305 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 642 B 668 REMARK 3 ORIGIN FOR THE GROUP (A): 48.4720 5.9940 13.6170 REMARK 3 T TENSOR REMARK 3 T11: -0.1145 T22: -0.0436 REMARK 3 T33: 0.0286 T12: -0.0191 REMARK 3 T13: -0.0974 T23: -0.1401 REMARK 3 L TENSOR REMARK 3 L11: 1.5419 L22: 8.6236 REMARK 3 L33: 10.1379 L12: -2.1093 REMARK 3 L13: -1.2177 L23: 7.5566 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.0572 S13: -0.0268 REMARK 3 S21: 0.6605 S22: 0.7147 S23: -0.8285 REMARK 3 S31: 0.2233 S32: 0.7315 S33: -0.7256 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 669 B 715 REMARK 3 ORIGIN FOR THE GROUP (A): 35.3510 -0.7120 -10.4740 REMARK 3 T TENSOR REMARK 3 T11: -0.0766 T22: -0.1963 REMARK 3 T33: -0.0685 T12: -0.0181 REMARK 3 T13: 0.0027 T23: 0.0790 REMARK 3 L TENSOR REMARK 3 L11: 9.3922 L22: 4.0780 REMARK 3 L33: 4.0986 L12: -0.1160 REMARK 3 L13: 2.0054 L23: -0.1527 REMARK 3 S TENSOR REMARK 3 S11: -0.0482 S12: 0.3113 S13: 0.3659 REMARK 3 S21: -0.3456 S22: 0.0645 S23: -0.0581 REMARK 3 S31: -0.2627 S32: 0.0107 S33: -0.0163 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 716 B 777 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6190 -10.3220 -5.0520 REMARK 3 T TENSOR REMARK 3 T11: -0.1209 T22: -0.1891 REMARK 3 T33: -0.1223 T12: 0.0055 REMARK 3 T13: -0.0006 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 5.0852 L22: 1.8926 REMARK 3 L33: 2.1506 L12: -0.0847 REMARK 3 L13: 0.1348 L23: 0.1942 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: -0.1525 S13: -0.1007 REMARK 3 S21: 0.1037 S22: 0.0786 S23: -0.1259 REMARK 3 S31: 0.0726 S32: -0.0599 S33: -0.0693 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9784 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : DUAL SLITS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40185 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES, 20% PEG 8K, 150MM AMMONIUM REMARK 280 SULFATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.72050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.28500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.89850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.28500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.72050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.89850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 568 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 620 CB CYS B 620 SG -0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 569 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 ASP A 612 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 655 -119.79 75.66 REMARK 500 LYS A 684 -44.08 -137.72 REMARK 500 GLU B 655 -121.45 73.27 REMARK 500 PRO B 709 23.87 -75.36 REMARK 500 ASP B 710 57.44 173.53 REMARK 500 ASP B 712 -67.01 -13.42 REMARK 500 ASN B 718 42.32 -144.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 776 SER B 777 -149.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 311 DBREF 2NTE A 568 777 UNP Q99728 BARD1_HUMAN 568 777 DBREF 2NTE B 568 777 UNP Q99728 BARD1_HUMAN 568 777 SEQRES 1 A 210 GLY PRO LEU VAL LEU ILE GLY SER GLY LEU SER SER GLU SEQRES 2 A 210 GLN GLN LYS MET LEU SER GLU LEU ALA VAL ILE LEU LYS SEQRES 3 A 210 ALA LYS LYS TYR THR GLU PHE ASP SER THR VAL THR HIS SEQRES 4 A 210 VAL VAL VAL PRO GLY ASP ALA VAL GLN SER THR LEU LYS SEQRES 5 A 210 CYS MET LEU GLY ILE LEU ASN GLY CYS TRP ILE LEU LYS SEQRES 6 A 210 PHE GLU TRP VAL LYS ALA CYS LEU ARG ARG LYS VAL CYS SEQRES 7 A 210 GLU GLN GLU GLU LYS TYR GLU ILE PRO GLU GLY PRO ARG SEQRES 8 A 210 ARG SER ARG LEU ASN ARG GLU GLN LEU LEU PRO LYS LEU SEQRES 9 A 210 PHE ASP GLY CYS TYR PHE TYR LEU TRP GLY THR PHE LYS SEQRES 10 A 210 HIS HIS PRO LYS ASP ASN LEU ILE LYS LEU VAL THR ALA SEQRES 11 A 210 GLY GLY GLY GLN ILE LEU SER ARG LYS PRO LYS PRO ASP SEQRES 12 A 210 SER ASP VAL THR GLN THR ILE ASN THR VAL ALA TYR HIS SEQRES 13 A 210 ALA ARG PRO ASP SER ASP GLN ARG PHE CYS THR GLN TYR SEQRES 14 A 210 ILE ILE TYR GLU ASP LEU CYS ASN TYR HIS PRO GLU ARG SEQRES 15 A 210 VAL ARG GLN GLY LYS VAL TRP LYS ALA PRO SER SER TRP SEQRES 16 A 210 PHE ILE ASP CYS VAL MET SER PHE GLU LEU LEU PRO LEU SEQRES 17 A 210 ASP SER SEQRES 1 B 210 GLY PRO LEU VAL LEU ILE GLY SER GLY LEU SER SER GLU SEQRES 2 B 210 GLN GLN LYS MET LEU SER GLU LEU ALA VAL ILE LEU LYS SEQRES 3 B 210 ALA LYS LYS TYR THR GLU PHE ASP SER THR VAL THR HIS SEQRES 4 B 210 VAL VAL VAL PRO GLY ASP ALA VAL GLN SER THR LEU LYS SEQRES 5 B 210 CYS MET LEU GLY ILE LEU ASN GLY CYS TRP ILE LEU LYS SEQRES 6 B 210 PHE GLU TRP VAL LYS ALA CYS LEU ARG ARG LYS VAL CYS SEQRES 7 B 210 GLU GLN GLU GLU LYS TYR GLU ILE PRO GLU GLY PRO ARG SEQRES 8 B 210 ARG SER ARG LEU ASN ARG GLU GLN LEU LEU PRO LYS LEU SEQRES 9 B 210 PHE ASP GLY CYS TYR PHE TYR LEU TRP GLY THR PHE LYS SEQRES 10 B 210 HIS HIS PRO LYS ASP ASN LEU ILE LYS LEU VAL THR ALA SEQRES 11 B 210 GLY GLY GLY GLN ILE LEU SER ARG LYS PRO LYS PRO ASP SEQRES 12 B 210 SER ASP VAL THR GLN THR ILE ASN THR VAL ALA TYR HIS SEQRES 13 B 210 ALA ARG PRO ASP SER ASP GLN ARG PHE CYS THR GLN TYR SEQRES 14 B 210 ILE ILE TYR GLU ASP LEU CYS ASN TYR HIS PRO GLU ARG SEQRES 15 B 210 VAL ARG GLN GLY LYS VAL TRP LYS ALA PRO SER SER TRP SEQRES 16 B 210 PHE ILE ASP CYS VAL MET SER PHE GLU LEU LEU PRO LEU SEQRES 17 B 210 ASP SER HET SO4 A 302 5 HET CL A 304 1 HET EDO A 307 4 HET EDO A 309 4 HET EDO A 310 4 HET SO4 B 301 5 HET CL B 306 1 HET CL B 305 1 HET EDO B 308 4 HET EDO B 311 4 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 CL 3(CL 1-) FORMUL 5 EDO 5(C2 H6 O2) FORMUL 13 HOH *238(H2 O) HELIX 1 1 SER A 578 LEU A 592 1 15 HELIX 2 2 THR A 617 ASN A 626 1 10 HELIX 3 3 PHE A 633 LYS A 643 1 11 HELIX 4 4 GLN A 647 TYR A 651 5 5 HELIX 5 5 GLU A 655 GLN A 666 1 12 HELIX 6 6 PRO A 687 GLY A 698 1 12 HELIX 7 7 LYS A 708 THR A 716 5 9 HELIX 8 8 SER A 728 PHE A 732 5 5 HELIX 9 9 SER A 760 PHE A 770 1 11 HELIX 10 10 SER B 578 LEU B 592 1 15 HELIX 11 11 THR B 617 GLY B 627 1 11 HELIX 12 12 PHE B 633 LYS B 643 1 11 HELIX 13 13 GLN B 647 GLU B 652 5 6 HELIX 14 14 GLU B 655 GLN B 666 1 12 HELIX 15 15 PRO B 687 GLY B 698 1 12 HELIX 16 16 SER B 711 ILE B 717 1 7 HELIX 17 17 SER B 728 PHE B 732 5 5 HELIX 18 18 SER B 760 PHE B 770 1 11 SHEET 1 A 4 LYS A 595 TYR A 597 0 SHEET 2 A 4 VAL A 571 GLY A 574 1 N LEU A 572 O LYS A 595 SHEET 3 A 4 HIS A 606 VAL A 609 1 O VAL A 608 N ILE A 573 SHEET 4 A 4 TRP A 629 LYS A 632 1 O TRP A 629 N VAL A 607 SHEET 1 B 5 GLN A 701 LEU A 703 0 SHEET 2 B 5 TYR A 676 LEU A 679 1 N PHE A 677 O LEU A 703 SHEET 3 B 5 GLN A 735 TYR A 739 1 O TYR A 736 N TYR A 678 SHEET 4 B 5 VAL A 755 PRO A 759 1 O TRP A 756 N ILE A 737 SHEET 5 B 5 ARG A 751 GLN A 752 -1 N GLN A 752 O VAL A 755 SHEET 1 C 4 LYS B 595 LYS B 596 0 SHEET 2 C 4 VAL B 571 GLY B 574 1 N LEU B 572 O LYS B 595 SHEET 3 C 4 HIS B 606 VAL B 609 1 O VAL B 608 N ILE B 573 SHEET 4 C 4 TRP B 629 LYS B 632 1 O LEU B 631 N VAL B 609 SHEET 1 D 5 GLN B 701 ILE B 702 0 SHEET 2 D 5 TYR B 676 LEU B 679 1 N PHE B 677 O GLN B 701 SHEET 3 D 5 GLN B 735 TYR B 739 1 O ILE B 738 N TYR B 678 SHEET 4 D 5 VAL B 755 PRO B 759 1 O ALA B 758 N ILE B 737 SHEET 5 D 5 ARG B 751 GLN B 752 -1 N GLN B 752 O VAL B 755 LINK O3 SO4 B 301 OG SER B 575 1555 1555 2.05 SITE 1 AC1 6 HOH B 63 HOH B 277 SER B 575 GLY B 576 SITE 2 AC1 6 THR B 617 LYS B 619 SITE 1 AC2 5 HOH A 10 SER A 575 GLY A 576 THR A 617 SITE 2 AC2 5 LYS A 619 SITE 1 AC3 1 ASN A 718 SITE 1 AC4 1 LYS B 757 SITE 1 AC5 3 ASP B 710 SER B 711 GLN B 715 SITE 1 AC6 6 HOH A 280 PRO A 707 SER A 711 ASP A 712 SITE 2 AC6 6 VAL A 713 GLN A 735 SITE 1 AC7 7 PHE B 672 ASP B 673 GLY B 674 CYS B 675 SITE 2 AC7 7 GLY B 699 GLY B 700 GLN B 701 SITE 1 AC8 4 HOH A 280 LEU A 703 SER A 704 ARG A 705 SITE 1 AC9 5 THR A 617 LEU A 618 MET A 621 HIS A 686 SITE 2 AC9 5 ASN A 690 SITE 1 BC1 2 ARG A 658 TYR B 678 CRYST1 57.441 75.797 116.570 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017409 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013193 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008579 0.00000