PDB Short entry for 2NZ2 HEADER LIGASE 22-NOV-06 2NZ2 TITLE CRYSTAL STRUCTURE OF HUMAN ARGININOSUCCINATE SYNTHASE IN COMPLEX WITH TITLE 2 ASPARTATE AND CITRULLINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININOSUCCINATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CITRULLINE--ASPARTATE LIGASE; COMPND 5 EC: 6.3.4.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASS1, ASS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS AMINO-ACID BIOSYNTHESIS, SYNTHASE, ASPARTATE, CITRULLINE, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KARLBERG,J.UPPENBERG,C.ARROWSMITH,H.BERGLUND,R.D.BUSAM,R.COLLINS, AUTHOR 2 A.EDWARDS,U.B.ERICSSON,S.FLODIN,A.FLORES,S.GRASLUND,B.M.HALLBERG, AUTHOR 3 M.HAMMARSTROM,M.HOGBOM,I.JOHANSSON,T.KOTENYOVA,A.MAGNUSDOTTIR, AUTHOR 4 M.MOCHE,M.E.NILSSON,P.NORDLUND,T.NYMAN,D.OGG,C.PERSSON,J.SAGEMARK, AUTHOR 5 P.STENMARK,M.SUNDSTROM,A.G.THORSELL,S.VAN DEN BERG,K.WALLDEN, AUTHOR 6 J.WEIGELT,L.HOLMBERG-SCHIAVONE,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 7 15-NOV-23 2NZ2 1 ATOM REVDAT 6 25-OCT-23 2NZ2 1 REMARK SEQADV REVDAT 5 18-OCT-17 2NZ2 1 REMARK REVDAT 4 13-JUL-11 2NZ2 1 VERSN REVDAT 3 24-FEB-09 2NZ2 1 VERSN REVDAT 2 26-FEB-08 2NZ2 1 JRNL REMARK REVDAT 1 05-DEC-06 2NZ2 0 JRNL AUTH T.KARLBERG,R.COLLINS,S.VAN DEN BERG,A.FLORES,M.HAMMARSTROM, JRNL AUTH 2 M.HOGBOM,L.HOLMBERG SCHIAVONE,J.UPPENBERG JRNL TITL STRUCTURE OF HUMAN ARGININOSUCCINATE SYNTHETASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 64 279 2008 JRNL REFN ISSN 0907-4449 JRNL PMID 18323623 JRNL DOI 10.1107/S0907444907067455 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 864 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1173 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3191 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.05000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -1.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.530 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.295 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.151 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.857 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3277 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4427 ; 1.858 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ;14.546 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;39.051 ;24.238 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 576 ;19.682 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.730 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 480 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2478 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1546 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2179 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 217 ; 0.195 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 125 ; 0.264 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.223 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2061 ; 0.669 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3220 ; 1.108 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1396 ; 1.726 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1207 ; 2.667 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040480. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR, SI REMARK 200 -111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17358 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : 0.20500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.26800 REMARK 200 R SYM FOR SHELL (I) : 0.45500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1VL2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 3350, 0.15M DL-MALIC ACID, PH REMARK 280 7.0, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.73500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.57500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.73500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.57500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.73500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.57500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.73500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.57500 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 47.97000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 77.57500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 47.97000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 77.57500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 47.97000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 77.57500 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 47.97000 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 77.57500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 47.97000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.73500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 47.97000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 58.73500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 47.97000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 58.73500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 47.97000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 58.73500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 26970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 58.73500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 77.57500 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 47.97000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 77.57500 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 47.97000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 58.73500 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 591 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLY A 156 REMARK 465 MET A 377 REMARK 465 LYS A 408 REMARK 465 VAL A 409 REMARK 465 THR A 410 REMARK 465 ALA A 411 REMARK 465 LYS A 412 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 155 CD CE NZ REMARK 470 ARG A 157 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 378 CG OD1 ND2 REMARK 470 VAL A 379 CG1 CG2 REMARK 470 GLN A 380 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 697 O HOH A 711 1.56 REMARK 500 O HOH A 509 O HOH A 688 2.07 REMARK 500 O GLU A 191 O HOH A 533 2.09 REMARK 500 OE1 GLU A 249 O HOH A 626 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 379 C GLN A 380 N -0.304 REMARK 500 GLN A 380 C GLY A 381 N -0.160 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 35 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 GLU A 191 N - CA - C ANGL. DEV. = 18.4 DEGREES REMARK 500 ARG A 272 N - CA - C ANGL. DEV. = -24.9 DEGREES REMARK 500 GLN A 380 CA - C - N ANGL. DEV. = -15.2 DEGREES REMARK 500 LEU A 399 N - CA - C ANGL. DEV. = -21.7 DEGREES REMARK 500 TYR A 402 N - CA - C ANGL. DEV. = -23.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 86 -41.91 -140.47 REMARK 500 PHE A 154 75.30 -113.26 REMARK 500 PRO A 172 153.32 -49.17 REMARK 500 THR A 174 32.58 -99.47 REMARK 500 PRO A 175 164.26 -49.83 REMARK 500 PRO A 178 48.16 -78.10 REMARK 500 GLU A 191 -36.80 -141.34 REMARK 500 ALA A 192 -155.15 -96.10 REMARK 500 LYS A 239 -75.77 -75.56 REMARK 500 SER A 365 133.69 -174.83 REMARK 500 GLN A 380 -121.50 47.04 REMARK 500 LEU A 399 -50.83 -120.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 174 PRO A 175 -102.12 REMARK 500 ASN A 271 ARG A 272 -131.12 REMARK 500 ARG A 398 LEU A 399 -113.34 REMARK 500 GLU A 401 TYR A 402 -125.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 380 16.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ASP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIR A 502 DBREF 2NZ2 A 1 412 UNP P00966 ASSY_HUMAN 1 412 SEQADV 2NZ2 SER A 0 UNP P00966 CLONING ARTIFACT SEQRES 1 A 413 SER MET SER SER LYS GLY SER VAL VAL LEU ALA TYR SER SEQRES 2 A 413 GLY GLY LEU ASP THR SER CYS ILE LEU VAL TRP LEU LYS SEQRES 3 A 413 GLU GLN GLY TYR ASP VAL ILE ALA TYR LEU ALA ASN ILE SEQRES 4 A 413 GLY GLN LYS GLU ASP PHE GLU GLU ALA ARG LYS LYS ALA SEQRES 5 A 413 LEU LYS LEU GLY ALA LYS LYS VAL PHE ILE GLU ASP VAL SEQRES 6 A 413 SER ARG GLU PHE VAL GLU GLU PHE ILE TRP PRO ALA ILE SEQRES 7 A 413 GLN SER SER ALA LEU TYR GLU ASP ARG TYR LEU LEU GLY SEQRES 8 A 413 THR SER LEU ALA ARG PRO CYS ILE ALA ARG LYS GLN VAL SEQRES 9 A 413 GLU ILE ALA GLN ARG GLU GLY ALA LYS TYR VAL SER HIS SEQRES 10 A 413 GLY ALA THR GLY LYS GLY ASN ASP GLN VAL ARG PHE GLU SEQRES 11 A 413 LEU SER CYS TYR SER LEU ALA PRO GLN ILE LYS VAL ILE SEQRES 12 A 413 ALA PRO TRP ARG MET PRO GLU PHE TYR ASN ARG PHE LYS SEQRES 13 A 413 GLY ARG ASN ASP LEU MET GLU TYR ALA LYS GLN HIS GLY SEQRES 14 A 413 ILE PRO ILE PRO VAL THR PRO LYS ASN PRO TRP SER MET SEQRES 15 A 413 ASP GLU ASN LEU MET HIS ILE SER TYR GLU ALA GLY ILE SEQRES 16 A 413 LEU GLU ASN PRO LYS ASN GLN ALA PRO PRO GLY LEU TYR SEQRES 17 A 413 THR LYS THR GLN ASP PRO ALA LYS ALA PRO ASN THR PRO SEQRES 18 A 413 ASP ILE LEU GLU ILE GLU PHE LYS LYS GLY VAL PRO VAL SEQRES 19 A 413 LYS VAL THR ASN VAL LYS ASP GLY THR THR HIS GLN THR SEQRES 20 A 413 SER LEU GLU LEU PHE MET TYR LEU ASN GLU VAL ALA GLY SEQRES 21 A 413 LYS HIS GLY VAL GLY ARG ILE ASP ILE VAL GLU ASN ARG SEQRES 22 A 413 PHE ILE GLY MET LYS SER ARG GLY ILE TYR GLU THR PRO SEQRES 23 A 413 ALA GLY THR ILE LEU TYR HIS ALA HIS LEU ASP ILE GLU SEQRES 24 A 413 ALA PHE THR MET ASP ARG GLU VAL ARG LYS ILE LYS GLN SEQRES 25 A 413 GLY LEU GLY LEU LYS PHE ALA GLU LEU VAL TYR THR GLY SEQRES 26 A 413 PHE TRP HIS SER PRO GLU CYS GLU PHE VAL ARG HIS CYS SEQRES 27 A 413 ILE ALA LYS SER GLN GLU ARG VAL GLU GLY LYS VAL GLN SEQRES 28 A 413 VAL SER VAL LEU LYS GLY GLN VAL TYR ILE LEU GLY ARG SEQRES 29 A 413 GLU SER PRO LEU SER LEU TYR ASN GLU GLU LEU VAL SER SEQRES 30 A 413 MET ASN VAL GLN GLY ASP TYR GLU PRO THR ASP ALA THR SEQRES 31 A 413 GLY PHE ILE ASN ILE ASN SER LEU ARG LEU LYS GLU TYR SEQRES 32 A 413 HIS ARG LEU GLN SER LYS VAL THR ALA LYS HET NA A 503 1 HET ASP A 501 9 HET CIR A 502 12 HETNAM NA SODIUM ION HETNAM ASP ASPARTIC ACID HETNAM CIR CITRULLINE FORMUL 2 NA NA 1+ FORMUL 3 ASP C4 H7 N O4 FORMUL 4 CIR C6 H13 N3 O3 FORMUL 5 HOH *210(H2 O) HELIX 1 1 GLY A 14 GLN A 27 1 14 HELIX 2 2 ASP A 43 GLY A 55 1 13 HELIX 3 3 VAL A 64 PHE A 72 1 9 HELIX 4 4 PHE A 72 SER A 79 1 8 HELIX 5 5 LEU A 82 ARG A 86 5 5 HELIX 6 6 LEU A 93 GLY A 110 1 18 HELIX 7 7 ASN A 123 ALA A 136 1 14 HELIX 8 8 ALA A 143 ARG A 146 5 4 HELIX 9 9 MET A 147 ASN A 152 1 6 HELIX 10 10 ARG A 157 HIS A 167 1 11 HELIX 11 11 ALA A 192 ASN A 197 5 6 HELIX 12 12 PRO A 203 TYR A 207 5 5 HELIX 13 13 THR A 246 GLY A 262 1 17 HELIX 14 14 THR A 284 MET A 302 1 19 HELIX 15 15 ASP A 303 GLY A 324 1 22 HELIX 16 16 SER A 328 GLN A 342 1 15 HELIX 17 17 ASN A 371 SER A 376 1 6 HELIX 18 18 GLU A 384 LEU A 405 1 22 SHEET 1 A 5 LYS A 58 ASP A 63 0 SHEET 2 A 5 TYR A 29 ASN A 37 1 N ASN A 37 O GLU A 62 SHEET 3 A 5 GLY A 5 ALA A 10 1 N VAL A 7 O ILE A 32 SHEET 4 A 5 TYR A 113 SER A 115 1 O SER A 115 N ALA A 10 SHEET 5 A 5 LYS A 140 ILE A 142 1 O LYS A 140 N VAL A 114 SHEET 1 B 4 MET A 181 GLU A 183 0 SHEET 2 B 4 ILE A 188 TYR A 190 -1 O SER A 189 N ASP A 182 SHEET 3 B 4 LYS A 277 GLU A 283 -1 O ILE A 281 N TYR A 190 SHEET 4 B 4 ARG A 265 ASN A 271 -1 N GLU A 270 O SER A 278 SHEET 1 C 5 THR A 243 HIS A 244 0 SHEET 2 C 5 VAL A 231 ASN A 237 -1 N VAL A 235 O HIS A 244 SHEET 3 C 5 ASP A 221 LYS A 228 -1 N GLU A 226 O VAL A 233 SHEET 4 C 5 GLY A 347 LEU A 354 -1 O VAL A 349 N ILE A 225 SHEET 5 C 5 GLN A 357 GLU A 364 -1 O LEU A 361 N GLN A 350 SITE 1 AC1 1 GLN A 107 SITE 1 AC2 10 ALA A 118 THR A 119 GLY A 122 ASN A 123 SITE 2 AC2 10 ASP A 124 GLU A 191 CIR A 502 HOH A 511 SITE 3 AC2 10 HOH A 569 HOH A 664 SITE 1 AC3 15 TYR A 87 THR A 91 ASN A 123 ASP A 124 SITE 2 AC3 15 ARG A 127 SER A 180 MET A 181 ASP A 182 SITE 3 AC3 15 SER A 189 GLU A 191 GLU A 270 TYR A 282 SITE 4 AC3 15 ASP A 501 HOH A 569 HOH A 647 CRYST1 95.940 117.470 155.150 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010423 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006445 0.00000