PDB Short entry for 2O2V HEADER TRANSFERASE 30-NOV-06 2O2V TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN MITOGEN ACTIVATED PROTEIN TITLE 2 KINASE KINASE 5 PHOX DOMAIN (MAP2K5-PHOX) WITH HUMAN MITOGEN TITLE 3 ACTIVATED PROTEIN KINASE KINASE KINASE 3 (MAP3K3B-PHOX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MAP2K5-PHOX; COMPND 5 SYNONYM: MAP KINASE KINASE 5, MAPKK 5, MAPK/ERK KINASE 5; COMPND 6 EC: 2.7.12.2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 3; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: MAP3K3B-PHOX; COMPND 12 SYNONYM: MAPK/ERK KINASE KINASE 3, MEK KINASE 3, MEKK 3; COMPND 13 EC: 2.7.11.25; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP2K5, MEK5, MKK5, PRKMK5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: MAP3K3, MAPKKK3, MEKK3; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS MITOGEN ACTIVATED PROTEIN KINASE KINASE 5, MAP2K5, MEK5, MKK5, KEYWDS 2 PRKMK5, MAP KINASE 5, PHOX, PHOX-DOMAIN, MITOGEN ACTIVATED PROTEIN KEYWDS 3 KINASE KINASE KINASE 3, MEKK3, MAPKKK3, MAP/ERK KINASE KINASE 3, KEYWDS 4 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 5 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,P.SAVITSKY,E.UGOCHUKWU,A.EDWARDS,C.ARROWSMITH, AUTHOR 2 M.SUNDSTROM,F.VON DELFT,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 30-AUG-23 2O2V 1 SEQADV REVDAT 4 18-OCT-17 2O2V 1 REMARK REVDAT 3 13-JUL-11 2O2V 1 VERSN REVDAT 2 24-FEB-09 2O2V 1 VERSN REVDAT 1 12-DEC-06 2O2V 0 JRNL AUTH P.FILIPPAKOPOULOS,P.SAVITSKY,E.UGOCHUKWU,A.EDWARDS, JRNL AUTH 2 C.ARROWSMITH,M.SUNDSTROM,F.VON DELFT,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN MITOGEN ACTIVATED JRNL TITL 2 PROTEIN KINASE KINASE 5 PHOX DOMAIN (MAP2K5-PHOX) WITH HUMAN JRNL TITL 3 MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE 3 JRNL TITL 4 (MAP3K3B-PHOX) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 19483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 997 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1278 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1371 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.099 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1402 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 934 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1903 ; 1.577 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2288 ; 1.005 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 175 ; 5.802 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;30.369 ;24.308 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 245 ;12.093 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.166 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 225 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1543 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 274 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 211 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 945 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 654 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 760 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 86 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 22 ; 0.231 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 898 ; 1.005 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 347 ; 0.259 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1419 ; 1.566 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 562 ; 2.524 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 482 ; 3.552 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2280 34.9870 9.4390 REMARK 3 T TENSOR REMARK 3 T11: 0.1411 T22: 0.0126 REMARK 3 T33: 0.0390 T12: 0.0210 REMARK 3 T13: 0.0119 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 3.4679 L22: 5.4799 REMARK 3 L33: 2.3429 L12: 0.7376 REMARK 3 L13: -1.0590 L23: -0.5813 REMARK 3 S TENSOR REMARK 3 S11: 0.0697 S12: -0.2181 S13: 0.0824 REMARK 3 S21: 0.3407 S22: -0.0696 S23: -0.0507 REMARK 3 S31: -0.4286 S32: -0.0464 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9080 29.2550 4.9630 REMARK 3 T TENSOR REMARK 3 T11: 0.0909 T22: 0.0418 REMARK 3 T33: 0.0603 T12: 0.0140 REMARK 3 T13: 0.0082 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 3.5321 L22: 3.7450 REMARK 3 L33: 3.3749 L12: -2.2183 REMARK 3 L13: 1.4394 L23: -1.2593 REMARK 3 S TENSOR REMARK 3 S11: -0.1897 S12: 0.0414 S13: -0.0672 REMARK 3 S21: 0.0761 S22: 0.0906 S23: 0.3126 REMARK 3 S31: -0.2834 S32: -0.3642 S33: 0.0992 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2440 21.3150 12.4210 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.0219 REMARK 3 T33: 0.0385 T12: 0.0054 REMARK 3 T13: 0.0224 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.1359 L22: 1.7997 REMARK 3 L33: 2.4198 L12: 0.5396 REMARK 3 L13: -0.0619 L23: 0.2743 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.0182 S13: 0.0707 REMARK 3 S21: 0.2096 S22: -0.0233 S23: 0.1202 REMARK 3 S31: -0.0402 S32: -0.0018 S33: 0.0240 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 31.6420 28.9550 14.4500 REMARK 3 T TENSOR REMARK 3 T11: -0.0161 T22: -0.0258 REMARK 3 T33: 0.0268 T12: 0.0109 REMARK 3 T13: 0.0351 T23: -0.0608 REMARK 3 L TENSOR REMARK 3 L11: 20.1207 L22: 12.6090 REMARK 3 L33: 10.7534 L12: 11.8219 REMARK 3 L13: 3.5702 L23: 0.0038 REMARK 3 S TENSOR REMARK 3 S11: -0.1861 S12: 0.1802 S13: -0.3403 REMARK 3 S21: -0.3071 S22: 0.3456 S23: -0.9372 REMARK 3 S31: -0.0534 S32: 0.6510 S33: -0.1595 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9230 29.2050 6.2830 REMARK 3 T TENSOR REMARK 3 T11: 0.0931 T22: 0.0745 REMARK 3 T33: 0.0425 T12: 0.0067 REMARK 3 T13: 0.0520 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 8.5487 L22: 2.8751 REMARK 3 L33: 8.6240 L12: -2.8748 REMARK 3 L13: 4.4875 L23: 1.3342 REMARK 3 S TENSOR REMARK 3 S11: -0.2856 S12: 0.5362 S13: 0.3241 REMARK 3 S21: -0.1080 S22: 0.2285 S23: -0.2302 REMARK 3 S31: -0.1759 S32: 0.8156 S33: 0.0571 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 42 B 48 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8930 14.8610 18.6300 REMARK 3 T TENSOR REMARK 3 T11: 0.0957 T22: 0.0616 REMARK 3 T33: 0.0471 T12: 0.0335 REMARK 3 T13: 0.0218 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 5.6838 L22: 7.4825 REMARK 3 L33: 14.6558 L12: -1.3648 REMARK 3 L13: -2.5442 L23: -2.7483 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: -0.5045 S13: 0.2142 REMARK 3 S21: 0.4378 S22: 0.0466 S23: -0.2102 REMARK 3 S31: -0.1920 S32: 0.6789 S33: -0.0750 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 49 B 63 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2140 12.9080 15.1180 REMARK 3 T TENSOR REMARK 3 T11: 0.0637 T22: 0.0386 REMARK 3 T33: 0.0371 T12: 0.0279 REMARK 3 T13: 0.0450 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 2.8653 L22: 4.4066 REMARK 3 L33: 8.6285 L12: 0.7344 REMARK 3 L13: 2.6050 L23: 0.0139 REMARK 3 S TENSOR REMARK 3 S11: -0.0355 S12: -0.1598 S13: -0.0849 REMARK 3 S21: -0.0045 S22: 0.1611 S23: 0.2388 REMARK 3 S31: 0.0552 S32: -0.0663 S33: -0.1256 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 64 B 71 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4460 6.8460 25.4480 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: -0.0012 REMARK 3 T33: 0.0020 T12: 0.0325 REMARK 3 T13: 0.0539 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 15.1748 L22: 4.9564 REMARK 3 L33: 9.5783 L12: -0.8107 REMARK 3 L13: -0.6827 L23: -4.7037 REMARK 3 S TENSOR REMARK 3 S11: -0.2940 S12: -0.4036 S13: -0.4302 REMARK 3 S21: 0.1217 S22: 0.2464 S23: 0.1797 REMARK 3 S31: 0.5168 S32: -0.0717 S33: 0.0476 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 72 B 101 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2180 3.0550 16.5930 REMARK 3 T TENSOR REMARK 3 T11: 0.0699 T22: -0.0374 REMARK 3 T33: 0.0424 T12: -0.0226 REMARK 3 T13: 0.0294 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 1.4169 L22: 3.7314 REMARK 3 L33: 3.2890 L12: -1.4564 REMARK 3 L13: -1.0238 L23: 0.9221 REMARK 3 S TENSOR REMARK 3 S11: -0.1368 S12: -0.0764 S13: -0.2017 REMARK 3 S21: 0.1731 S22: 0.0816 S23: 0.1142 REMARK 3 S31: 0.2553 S32: -0.0413 S33: 0.0552 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 102 B 123 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8610 7.5020 15.6790 REMARK 3 T TENSOR REMARK 3 T11: 0.1028 T22: 0.0692 REMARK 3 T33: 0.0724 T12: 0.0551 REMARK 3 T13: 0.0443 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 4.6746 L22: 4.1047 REMARK 3 L33: 5.4669 L12: -0.8297 REMARK 3 L13: 1.2977 L23: -0.0768 REMARK 3 S TENSOR REMARK 3 S11: -0.0728 S12: -0.0292 S13: -0.0406 REMARK 3 S21: 0.0573 S22: 0.0028 S23: -0.3854 REMARK 3 S31: 0.1715 S32: 0.6024 S33: 0.0700 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2O2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19523 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.57800 REMARK 200 R SYM FOR SHELL (I) : 0.57800 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2C60, 1WI0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M CACL2, 0.1M NA(CH3COO), 30% MPD, REMARK 280 PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.70400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.82700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.82700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.85200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.82700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.82700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.55600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.82700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.82700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.85200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.82700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.82700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.55600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 27.70400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 3 REMARK 465 MET A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 GLY A 7 REMARK 465 PRO A 8 REMARK 465 PHE A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 MET A 12 REMARK 465 GLU A 13 REMARK 465 ASN A 14 REMARK 465 GLN A 15 REMARK 465 GLY A 36 REMARK 465 SER B 35 REMARK 465 MET B 36 REMARK 465 GLY B 37 REMARK 465 HIS B 38 REMARK 465 SER B 39 REMARK 465 ASN B 40 REMARK 465 ARG B 41 REMARK 465 ASP B 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 35 OG REMARK 470 GLN A 38 CG CD OE1 NE2 REMARK 470 ARG A 42 CZ NH1 NH2 REMARK 470 GLU A 54 OE1 OE2 REMARK 470 LYS A 79 CE NZ REMARK 470 MET A 90 SD CE REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 GLN A 97 CG CD OE1 NE2 REMARK 470 LEU A 98 CG CD1 CD2 REMARK 470 ILE A 99 CD1 REMARK 470 GLU A 100 CD OE1 OE2 REMARK 470 GLN B 42 CG CD OE1 NE2 REMARK 470 LYS B 102 CE NZ REMARK 470 SER B 112 OG REMARK 470 GLN B 123 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 69 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 69 NE - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG B 56 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 56 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 88 -117.66 54.42 REMARK 500 SER B 112 -60.05 -97.69 REMARK 500 REMARK 500 REMARK: NULL DBREF 2O2V A 5 108 UNP Q13163 MP2K5_HUMAN 5 108 DBREF 2O2V B 37 124 UNP Q99759 M3K3_HUMAN 37 124 SEQADV 2O2V SER A 3 UNP Q13163 CLONING ARTIFACT SEQADV 2O2V MET A 4 UNP Q13163 CLONING ARTIFACT SEQADV 2O2V SER B 35 UNP Q99759 CLONING ARTIFACT SEQADV 2O2V MET B 36 UNP Q99759 CLONING ARTIFACT SEQRES 1 A 106 SER MET ALA LEU GLY PRO PHE PRO ALA MET GLU ASN GLN SEQRES 2 A 106 VAL LEU VAL ILE ARG ILE LYS ILE PRO ASN SER GLY ALA SEQRES 3 A 106 VAL ASP TRP THR VAL HIS SER GLY PRO GLN LEU LEU PHE SEQRES 4 A 106 ARG ASP VAL LEU ASP VAL ILE GLY GLN VAL LEU PRO GLU SEQRES 5 A 106 ALA THR THR THR ALA PHE GLU TYR GLU ASP GLU ASP GLY SEQRES 6 A 106 ASP ARG ILE THR VAL ARG SER ASP GLU GLU MET LYS ALA SEQRES 7 A 106 MET LEU SER TYR TYR TYR SER THR VAL MET GLU GLN GLN SEQRES 8 A 106 VAL ASN GLY GLN LEU ILE GLU PRO LEU GLN ILE PHE PRO SEQRES 9 A 106 ARG ALA SEQRES 1 B 90 SER MET GLY HIS SER ASN ARG GLN SER ASP VAL ARG ILE SEQRES 2 B 90 LYS PHE GLU HIS ASN GLY GLU ARG ARG ILE ILE ALA PHE SEQRES 3 B 90 SER ARG PRO VAL LYS TYR GLU ASP VAL GLU HIS LYS VAL SEQRES 4 B 90 THR THR VAL PHE GLY GLN PRO LEU ASP LEU HIS TYR MET SEQRES 5 B 90 ASN ASN GLU LEU SER ILE LEU LEU LYS ASN GLN ASP ASP SEQRES 6 B 90 LEU ASP LYS ALA ILE ASP ILE LEU ASP ARG SER SER SER SEQRES 7 B 90 MET LYS SER LEU ARG ILE LEU LEU LEU SER GLN ASP FORMUL 3 HOH *141(H2 O) HELIX 1 1 LEU A 40 LEU A 52 1 13 HELIX 2 2 SER A 74 GLY A 96 1 23 HELIX 3 3 LYS B 65 GLY B 78 1 14 HELIX 4 4 ASN B 96 SER B 110 1 15 SHEET 1 A 5 GLY A 27 VAL A 33 0 SHEET 2 A 5 LEU A 17 ILE A 23 -1 N ILE A 21 O VAL A 29 SHEET 3 A 5 LEU A 102 ARG A 107 1 O ILE A 104 N ARG A 20 SHEET 4 A 5 ALA A 59 GLU A 63 -1 N GLU A 61 O PHE A 105 SHEET 5 A 5 ARG A 69 VAL A 72 -1 O VAL A 72 N PHE A 60 SHEET 1 B 5 GLU B 54 PHE B 60 0 SHEET 2 B 5 VAL B 45 HIS B 51 -1 N PHE B 49 O ARG B 56 SHEET 3 B 5 LEU B 116 LEU B 121 1 O LEU B 120 N GLU B 50 SHEET 4 B 5 ASP B 82 ASN B 87 -1 N HIS B 84 O LEU B 119 SHEET 5 B 5 LEU B 90 LEU B 94 -1 O LEU B 90 N ASN B 87 CISPEP 1 ARG B 62 PRO B 63 0 -9.01 CRYST1 87.654 87.654 55.408 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011408 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018048 0.00000