PDB Short entry for 2O2W HEADER SIGNALING PROTEIN 30-NOV-06 2O2W TITLE EXTENDING POWDER DIFFRACTION TO PROTEINS: STRUCTURE SOLUTION OF THE TITLE 2 SECOND SH3 DOMAIN FROM PONSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PONSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SRC HOMOLOGY 3 (SH3) DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SORBS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET151 KEYWDS POWDER DIFFRACTION, SH3, PONSIN, SIGNALING PROTEIN EXPDTA POWDER DIFFRACTION AUTHOR N.PINOTSIS,I.MARGIOLAKI REVDAT 3 27-DEC-23 2O2W 1 SEQADV REVDAT 2 24-FEB-09 2O2W 1 VERSN REVDAT 1 23-OCT-07 2O2W 0 JRNL AUTH I.MARGIOLAKI,J.P.WRIGHT,M.WILMANNS,A.N.FITCH,N.PINOTSIS JRNL TITL SECOND SH3 DOMAIN OF PONSIN SOLVED FROM POWDER DIFFRACTION JRNL REF J.AM.CHEM.SOC. V. 129 11865 2007 JRNL REFN ISSN 0002-7863 JRNL PMID 17784760 JRNL DOI 10.1021/JA073846C REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 4 REMARK 4 2O2W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040618. REMARK 250 REMARK 250 REFINEMENT. REMARK 250 PROGRAM : GSAS REMARK 250 AUTHORS : LARSON & VON DREELE REMARK 250 DATA USED IN REFINEMENT REMARK 250 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 250 RESOLUTION RANGE LOW (ANGSTROMS) : 15.29 REMARK 250 POWDER DIFFRACTION DATA. REMARK 250 FIT TO DATA USED IN REFINEMENT REMARK 250 NUMBER OF POWDER PATTERNS : 4 REMARK 250 PROFILE R VALUES (%) : 2.97 2.90 2.91 3.28 REMARK 250 WEIGHTED PROFILE R VALUES (%) : 4.24 4.02 3.94 4.44 REMARK 250 F**2 R VALUES (%) : 21.78 24.94 28.10 14.50 REMARK 250 NUMBER OF POWDER PATTERN POINTS : 9100 10666 6154 4359 REMARK 250 NUMBER OF REFLECTIONS : 3317 3348 1865 1719 REMARK 250 TOTAL NUMBER OF POWDER POINTS : 30279 REMARK 250 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 250 PROTEIN ATOMS : 544 REMARK 250 NUCLEIC ACID ATOMS : NULL REMARK 250 HETEROGEN ATOMS : NULL REMARK 250 SOLVENT ATOMS : 36 REMARK 250 MODEL REFINEMENT. REMARK 250 NUMBER OF LEAST-SQUARES PARAMETERS : 1752 REMARK 250 NUMBER OF RESTRAINTS : 1980 REMARK 250 LEAST-SQUARES MATRIX BAND WIDTH : 5 REMARK 250 MARQUARDT COEFFICIENT : 5.86 REMARK 250 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. NUMBER. REMARK 250 BOND ANGLES (DEG) : 2.49 740 REMARK 250 INTERATOMIC DISTANCES (A) :0.010 556 REMARK 250 TORSION ANGLE RESTRAINTS (E) : 0.30 205 REMARK 250 CHIRAL VOLUMES (A**3) :0.161 72 REMARK 250 DISTANCES FROM RESTRAINT PLANES (A) :0.014 439 REMARK 250 TORSION PSEUDOPOTENTIAL RESTRAINTS (E) : 2.34 92 REMARK 250 ANTI-BUMPING DISTANCE RESTRAINTS (A) :0.025 102 REMARK 250 HYDROGEN BOND DISTANCE RESTRAINTS (A) :0.170 77 REMARK 250 EXPERIMENTAL DETAILS REMARK 250 EXPERIMENT TYPE : X-RAY POWDER DIFFRACTION REMARK 250 DATE OF DATA COLLECTION : 13-MAR-2006 REMARK 250 TEMPERATURE (KELVIN) : 295 REMARK 250 PH : REMARK 250 SAMPLE HOLDER : 1.5MM GLASS CAPILLARY REMARK 250 NUMBER OF CRYSTALS USED : POLYCRYSTAL SLURRY REMARK 250 SYNCHROTRON (Y/N) : Y REMARK 250 RADIATION SOURCE : ESRF REMARK 250 BEAMLINE : ID31 REMARK 250 X-RAY GENERATOR MODEL : NULL REMARK 250 MONOCHROMATIC OR LAUE (M/L) : M REMARK 250 WAVELENGTH OR RANGE (A) : 0.8012034(76), REMARK 250 1.251209(40), 1.242481(32) REMARK 250 MONOCHROMATOR : DOUBLE SI(111) REMARK 250 OPTICS : 2MM X 8MM BEAM REMARK 250 ANALYZER : SI(111) REMARK 250 DETECTOR TYPE : NINE AVALANCHE PHOTODIODE REMARK 250 (APD) REMARK 250 DETECTOR MANUFACTURER : NULL REMARK 250 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 250 DATA SCALING SOFTWARE : ID31SUM REMARK 250 SOFTWARE USED: GSAS REMARK 250 STARTING MODEL: PDB ENTRY 1W70 REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 855 -159.91 -154.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O31 RELATED DB: PDB DBREF 2O2W A 824 884 UNP A0AED4 A0AED4_HUMAN 824 884 SEQADV 2O2W GLY A 818 UNP A0AED4 EXPRESSION TAG SEQADV 2O2W ILE A 819 UNP A0AED4 EXPRESSION TAG SEQADV 2O2W ASP A 820 UNP A0AED4 EXPRESSION TAG SEQADV 2O2W PRO A 821 UNP A0AED4 EXPRESSION TAG SEQADV 2O2W PHE A 822 UNP A0AED4 EXPRESSION TAG SEQADV 2O2W THR A 823 UNP A0AED4 EXPRESSION TAG SEQRES 1 A 67 GLY ILE ASP PRO PHE THR GLY GLU ALA ILE ALA LYS PHE SEQRES 2 A 67 ASN PHE ASN GLY ASP THR GLN VAL GLU MET SER PHE ARG SEQRES 3 A 67 LYS GLY GLU ARG ILE THR LEU LEU ARG GLN VAL ASP GLU SEQRES 4 A 67 ASN TRP TYR GLU GLY ARG ILE PRO GLY THR SER ARG GLN SEQRES 5 A 67 GLY ILE PHE PRO ILE THR TYR VAL ASP VAL ILE LYS ARG SEQRES 6 A 67 PRO LEU FORMUL 2 HOH *36(H2 O) SHEET 1 A 5 GLN A 869 PRO A 873 0 SHEET 2 A 5 TRP A 858 ARG A 862 -1 N GLY A 861 O GLY A 870 SHEET 3 A 5 ARG A 847 GLN A 853 -1 N ARG A 852 O GLU A 860 SHEET 4 A 5 GLY A 824 ALA A 828 -1 N GLY A 824 O LEU A 850 SHEET 5 A 5 VAL A 877 VAL A 879 -1 O ASP A 878 N ILE A 827 CRYST1 24.704 36.426 72.099 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.040479 0.000000 0.000000 0.00000 SCALE2 0.000000 0.027453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013870 0.00000