PDB Short entry for 2O72 HEADER CELL ADHESION, METAL BINDING PROTEIN 09-DEC-06 2O72 TITLE CRYSTAL STRUCTURE ANALYSIS OF HUMAN E-CADHERIN (1-213) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL-CADHERIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAINS 1 AND 2, RESIDUES 155-317; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDH1, CDHE, UVO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS IG-LIKE DOMAINS, CALCIUM-BINDING PROTEIN, CELL ADHESION, METAL KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.PARISINI,J.-H.WANG REVDAT 5 30-AUG-23 2O72 1 REMARK REVDAT 4 20-OCT-21 2O72 1 REMARK SEQADV LINK REVDAT 3 18-OCT-17 2O72 1 REMARK REVDAT 2 24-FEB-09 2O72 1 VERSN REVDAT 1 09-OCT-07 2O72 0 JRNL AUTH E.PARISINI,J.M.G.HIGGINS,J.-H.LIU,M.B.BRENNER,J.-H.WANG JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN E-CADHERIN DOMAINS 1 AND 2, JRNL TITL 2 AND COMPARISON WITH OTHER CADHERINS IN THE CONTEXT OF JRNL TITL 3 ADHESION MECHANISM JRNL REF J.MOL.BIOL. V. 373 401 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17850815 JRNL DOI 10.1016/J.JMB.2007.08.011 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 20836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1068 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1198 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1627 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.626 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1657 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1064 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2266 ; 1.445 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2637 ; 0.917 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 212 ; 6.414 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;39.170 ;26.389 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 268 ;13.981 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;19.597 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 271 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1849 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 290 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 273 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1086 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 786 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 889 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 195 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 17 ; 0.125 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.122 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 24 ; 0.221 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.204 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1097 ; 0.937 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 425 ; 0.204 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1747 ; 1.323 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 636 ; 2.262 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 519 ; 3.347 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2O72 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20837 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.32300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1EDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 0.2M CALCIUM CHLORIDE, REMARK 280 5% DMSO, 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 4K, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.67050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.53850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.67050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.53850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 94.37420 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 111.06239 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 43 -86.96 -108.20 REMARK 500 GLU A 156 35.15 -93.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 GLU A 69 OE1 87.6 REMARK 620 3 GLU A 69 OE2 111.7 49.4 REMARK 620 4 ASP A 100 OD1 90.6 118.1 74.9 REMARK 620 5 GLN A 101 O 81.7 151.9 158.0 88.1 REMARK 620 6 ASP A 103 OD1 87.2 77.0 119.9 164.7 76.6 REMARK 620 7 ASP A 136 OD1 165.5 96.0 80.8 100.0 88.8 79.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 ASP A 67 OD1 89.1 REMARK 620 3 GLU A 69 OE1 84.9 90.9 REMARK 620 4 ASP A 103 OD2 94.5 159.9 109.1 REMARK 620 5 ASP A 103 OD1 90.1 157.4 66.5 42.6 REMARK 620 6 HOH A 428 O 90.3 78.6 168.6 81.5 124.0 REMARK 620 7 HOH A 479 O 173.4 92.5 88.7 86.2 86.0 96.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 102 OD1 REMARK 620 2 ASN A 104 O 106.0 REMARK 620 3 ASP A 134 OD1 141.9 94.3 REMARK 620 4 ASP A 134 OD2 155.0 90.4 51.9 REMARK 620 5 ASP A 136 OD2 73.0 81.8 78.5 129.1 REMARK 620 6 ASN A 143 O 80.8 173.1 79.2 83.7 99.1 REMARK 620 7 ASP A 195 OD2 78.5 90.3 134.4 82.8 146.8 92.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 110 OE1 REMARK 620 2 GLU A 119 OE1 169.0 REMARK 620 3 GLU A 119 OE2 140.6 42.8 REMARK 620 4 ASP A 180 OD1 89.5 88.3 129.8 REMARK 620 5 CA A 405 CA 88.5 85.5 64.6 135.2 REMARK 620 6 HOH A 624 O 74.3 109.0 66.7 162.3 53.2 REMARK 620 7 HOH A 639 O 82.4 108.3 97.4 87.3 136.5 83.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 181 NH1 REMARK 620 2 GLU A 182 OE2 78.7 REMARK 620 3 ASP A 213 OD1 57.5 135.3 REMARK 620 4 HOH A 546 O 111.3 127.9 68.0 REMARK 620 5 HOH A 624 O 153.2 86.7 137.0 95.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 405 DBREF 2O72 A 1 213 UNP P12830 CADH1_HUMAN 155 367 SEQADV 2O72 SER A 9 UNP P12830 CYS 163 ENGINEERED MUTATION SEQRES 1 A 213 ASP TRP VAL ILE PRO PRO ILE SER SER PRO GLU ASN GLU SEQRES 2 A 213 LYS GLY PRO PHE PRO LYS ASN LEU VAL GLN ILE LYS SER SEQRES 3 A 213 ASN LYS ASP LYS GLU GLY LYS VAL PHE TYR SER ILE THR SEQRES 4 A 213 GLY GLN GLY ALA ASP THR PRO PRO VAL GLY VAL PHE ILE SEQRES 5 A 213 ILE GLU ARG GLU THR GLY TRP LEU LYS VAL THR GLU PRO SEQRES 6 A 213 LEU ASP ARG GLU ARG ILE ALA THR TYR THR LEU PHE SER SEQRES 7 A 213 HIS ALA VAL SER SER ASN GLY ASN ALA VAL GLU ASP PRO SEQRES 8 A 213 MET GLU ILE LEU ILE THR VAL THR ASP GLN ASN ASP ASN SEQRES 9 A 213 LYS PRO GLU PHE THR GLN GLU VAL PHE LYS GLY SER VAL SEQRES 10 A 213 MET GLU GLY ALA LEU PRO GLY THR SER VAL MET GLU VAL SEQRES 11 A 213 THR ALA THR ASP ALA ASP ASP ASP VAL ASN THR TYR ASN SEQRES 12 A 213 ALA ALA ILE ALA TYR THR ILE LEU SER GLN ASP PRO GLU SEQRES 13 A 213 LEU PRO ASP LYS ASN MET PHE THR ILE ASN ARG ASN THR SEQRES 14 A 213 GLY VAL ILE SER VAL VAL THR THR GLY LEU ASP ARG GLU SEQRES 15 A 213 SER PHE PRO THR TYR THR LEU VAL VAL GLN ALA ALA ASP SEQRES 16 A 213 LEU GLN GLY GLU GLY LEU SER THR THR ALA THR ALA VAL SEQRES 17 A 213 ILE THR VAL THR ASP HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET CA A 405 1 HETNAM CA CALCIUM ION FORMUL 2 CA 5(CA 2+) FORMUL 7 HOH *245(H2 O) HELIX 1 1 SER A 26 GLU A 31 5 6 SHEET 1 A 4 ILE A 7 PRO A 10 0 SHEET 2 A 4 MET A 92 THR A 99 1 O THR A 97 N ILE A 7 SHEET 3 A 4 THR A 73 SER A 82 -1 N LEU A 76 O ILE A 94 SHEET 4 A 4 VAL A 34 THR A 39 -1 N PHE A 35 O VAL A 81 SHEET 1 B 3 LYS A 19 GLN A 23 0 SHEET 2 B 3 TRP A 59 VAL A 62 -1 O LEU A 60 N VAL A 22 SHEET 3 B 3 PHE A 51 ILE A 53 -1 N ILE A 52 O LYS A 61 SHEET 1 C 2 GLU A 107 PHE A 108 0 SHEET 2 C 2 ALA A 132 THR A 133 -1 O THR A 133 N GLU A 107 SHEET 1 D 4 VAL A 112 MET A 118 0 SHEET 2 D 4 SER A 202 THR A 212 1 O VAL A 208 N PHE A 113 SHEET 3 D 4 THR A 186 ALA A 194 -1 N LEU A 189 O ALA A 207 SHEET 4 D 4 ALA A 147 ASP A 154 -1 N LEU A 151 O VAL A 190 SHEET 1 E 3 SER A 126 GLU A 129 0 SHEET 2 E 3 VAL A 171 VAL A 174 -1 O ILE A 172 N VAL A 127 SHEET 3 E 3 PHE A 163 ILE A 165 -1 N THR A 164 O SER A 173 LINK OE2 GLU A 11 CA CA A 402 1555 1555 2.39 LINK OE1 GLU A 11 CA CA A 403 1555 1555 2.40 LINK OD1 ASP A 67 CA CA A 403 1555 1555 2.17 LINK OE1 GLU A 69 CA CA A 402 1555 1555 2.74 LINK OE2 GLU A 69 CA CA A 402 1555 1555 2.24 LINK OE1 GLU A 69 CA CA A 403 1555 1555 2.34 LINK OD1 ASP A 100 CA CA A 402 1555 1555 2.28 LINK O GLN A 101 CA CA A 402 1555 1555 2.40 LINK OD1 ASN A 102 CA CA A 401 1555 1555 2.46 LINK OD1 ASP A 103 CA CA A 402 1555 1555 2.27 LINK OD2 ASP A 103 CA CA A 403 1555 1555 2.25 LINK OD1 ASP A 103 CA CA A 403 1555 1555 3.22 LINK O ASN A 104 CA CA A 401 1555 1555 2.17 LINK OE1 GLN A 110 CA CA A 404 4545 1555 2.52 LINK OE1 GLU A 119 CA CA A 404 1555 1555 2.77 LINK OE2 GLU A 119 CA CA A 404 1555 1555 3.15 LINK OD1 ASP A 134 CA CA A 401 1555 1555 2.50 LINK OD2 ASP A 134 CA CA A 401 1555 1555 2.48 LINK OD2 ASP A 136 CA CA A 401 1555 1555 2.38 LINK OD1 ASP A 136 CA CA A 402 1555 1555 2.45 LINK O ASN A 143 CA CA A 401 1555 1555 2.35 LINK OD1 ASP A 180 CA CA A 404 1555 1555 2.39 LINK NH1 ARG A 181 CA CA A 405 1555 1555 3.33 LINK OE2 GLU A 182 CA CA A 405 1555 1555 3.07 LINK OD2 ASP A 195 CA CA A 401 1555 1555 2.36 LINK OD1 ASP A 213 CA CA A 405 1555 1555 3.06 LINK CA CA A 403 O HOH A 428 1555 1555 2.37 LINK CA CA A 403 O HOH A 479 1555 1555 2.35 LINK CA CA A 404 CA CA A 405 1555 1555 3.32 LINK CA CA A 404 O HOH A 624 1555 1555 2.58 LINK CA CA A 404 O HOH A 639 1555 1555 2.36 LINK CA CA A 405 O HOH A 546 1555 1555 2.89 LINK CA CA A 405 O HOH A 624 1555 1555 2.72 CISPEP 1 GLY A 15 PRO A 16 0 -1.53 CISPEP 2 PHE A 17 PRO A 18 0 2.73 CISPEP 3 PRO A 46 PRO A 47 0 -2.08 CISPEP 4 ASP A 154 PRO A 155 0 -1.68 CISPEP 5 LEU A 157 PRO A 158 0 -2.04 SITE 1 AC1 6 ASN A 102 ASN A 104 ASP A 134 ASP A 136 SITE 2 AC1 6 ASN A 143 ASP A 195 SITE 1 AC2 6 GLU A 11 GLU A 69 ASP A 100 GLN A 101 SITE 2 AC2 6 ASP A 103 ASP A 136 SITE 1 AC3 6 GLU A 11 ASP A 67 GLU A 69 ASP A 103 SITE 2 AC3 6 HOH A 428 HOH A 479 SITE 1 AC4 6 GLN A 110 GLU A 119 ASP A 180 CA A 405 SITE 2 AC4 6 HOH A 624 HOH A 639 SITE 1 AC5 7 GLU A 119 ARG A 181 GLU A 182 ASP A 213 SITE 2 AC5 7 CA A 404 HOH A 546 HOH A 624 CRYST1 137.341 41.077 59.542 90.00 111.15 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007281 0.000000 0.002817 0.00000 SCALE2 0.000000 0.024345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018008 0.00000