PDB Short entry for 2OCW HEADER IMMUNE SYSTEM 21-DEC-06 2OCW TITLE SOLUTION STRUCTURE OF HUMAN SECRETORY COMPONENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERIC-IMMUNOGLOBULIN RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POLY-IG RECEPTOR, PIGR, HEPATOCELLULAR CARCINOMA-ASSOCIATED COMPND 5 PROTEIN TB6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIGR; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_TISSUE: OVARIAN CELLS KEYWDS SC, IMMUNOGLOBULIN, SECRETORY, ANTIBODY, IMMUNITY, IMMUNE SYSTEM EXPDTA SOLUTION SCATTERING NUMMDL 10 MDLTYP CA ATOMS ONLY, CHAIN A AUTHOR A.BONNER,C.PERRIER,B.CORTHESY,S.J.PERKINS REVDAT 5 18-OCT-17 2OCW 1 REMARK REVDAT 4 07-APR-10 2OCW 1 REMARK REVDAT 3 24-FEB-09 2OCW 1 VERSN REVDAT 2 19-JUN-07 2OCW 1 JRNL REVDAT 1 10-APR-07 2OCW 0 JRNL AUTH A.BONNER,C.PERRIER,B.CORTHESY,S.J.PERKINS JRNL TITL SOLUTION STRUCTURE OF HUMAN SECRETORY COMPONENT AND JRNL TITL 2 IMPLICATIONS FOR BIOLOGICAL FUNCTION. JRNL REF J.BIOL.CHEM. V. 282 16969 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17428798 JRNL DOI 10.1074/JBC.M701281200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : INSIGHTII 98 REMARK 3 AUTHORS : REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 585 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OCW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040976. REMARK 265 REMARK 265 EXPERIMENTAL DETAILS REMARK 265 REMARK 265 EXPERIMENT TYPE : SMALL ANGLE X-RAY SCATTERING REMARK 265 DATA ACQUISITION REMARK 265 RADIATION/NEUTRON SOURCE : ESRF GRENOBLE REMARK 265 SYNCHROTRON (Y/N) : Y REMARK 265 BEAMLINE TYPE : IDO2 REMARK 265 BEAMLINE INSTRUMENT : NULL REMARK 265 DETECTOR TYPE : FRELON CCD CAMERA REMARK 265 DETECTOR MANUFACTURER DETAILS : NULL REMARK 265 TEMPERATURE (KELVIN) : 288 REMARK 265 PH : 7.2 REMARK 265 NUMBER OF TIME FRAMES USED : 10 REMARK 265 PROTEIN CONCENTRATION RANGE (MG/ML) : 0.62-2.0 REMARK 265 SAMPLE BUFFER : 9.6 MM NA, K REMARK 265 PHOSPHATE 116MM NACL REMARK 265 10.4MM NA2HPO4 3.2MM REMARK 265 NAH2PO4 REMARK 265 DATA REDUCTION SOFTWARE : MULTICCD REMARK 265 GUINIER MEAN RADIUS OF GYRATION (NM) : 3.53 REMARK 265 SIGMA MEAN RADIUS OF GYRATION : 0.03 REMARK 265 R(XS-1) MEAN CROSS SECTIONAL RADII (NM) : 1.76 REMARK 265 R(XS-1) SIGMA MEAN CROSS SECTIONAL RADII : 0.08 REMARK 265 R(XS-2) MEAN CROSS SECTIONAL RADII (NM) : NULL REMARK 265 R(XS-2) SIGMA MEAN CROSS SECTIONAL RADII : NULL REMARK 265 P(R) PROTEIN LENGTH (NM) : 1 REMARK 265 REMARK 265 EXPERIMENT TYPE : SMALL ANGLE NEUTRON SCATTERING REMARK 265 DATA ACQUISITION REMARK 265 RADIATION/NEUTRON SOURCE : ISIS RUTHERFORD REMARK 265 SYNCHROTRON (Y/N) : Y REMARK 265 BEAMLINE TYPE : LOQ REMARK 265 BEAMLINE INSTRUMENT : NULL REMARK 265 DETECTOR TYPE : HE-3 ORDELA DETECTOR REMARK 265 DETECTOR MANUFACTURER DETAILS : NULL REMARK 265 TEMPERATURE (KELVIN) : 288 REMARK 265 PH : 7.5 REMARK 265 NUMBER OF TIME FRAMES USED : 1 REMARK 265 PROTEIN CONCENTRATION RANGE (MG/ML) : 0.62-2.0 REMARK 265 SAMPLE BUFFER : 9.6 MM NA, K REMARK 265 PHOSPHATE 2.7MM KCL REMARK 265 8.1MM NA2HPO4 1.5MM REMARK 265 KH2PO4 99.9% D2O REMARK 265 DATA REDUCTION SOFTWARE : COLETTE REMARK 265 GUINIER MEAN RADIUS OF GYRATION (NM) : 3.63 REMARK 265 SIGMA MEAN RADIUS OF GYRATION : 0.27 REMARK 265 R(XS-1) MEAN CROSS SECTIONAL RADII (NM) : 1.07 REMARK 265 R(XS-1) SIGMA MEAN CROSS SECTIONAL RADII : 0.07 REMARK 265 R(XS-2) MEAN CROSS SECTIONAL RADII (NM) : NULL REMARK 265 R(XS-2) SIGMA MEAN CROSS SECTIONAL RADII : NULL REMARK 265 P(R) PROTEIN LENGTH (NM) : 1 REMARK 265 REMARK 265 DATA ANALYSIS AND MODEL FITTING: REMARK 265 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 265 SOFTWARE USED : INSIGHT II, SCTPL7, GNOM REMARK 265 SOFTWARE AUTHORS : NULL REMARK 265 STARTING MODEL : NULL REMARK 265 REMARK 265 CONFORMERS, NUMBER CALCULATED : NULL REMARK 265 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 265 CONFORMERS, SELECTION CRITERIA : NULL REMARK 265 REMARK 265 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 265 REMARK 265 OTHER DETAILS: MODEL 1 CORRESPONDS TO OUR BEST FIT STRUCTURE IN REMARK 265 THE PRIMARY REFERENCE. MODELS 2-10 CORRESPOND TO THE OTHER NINE REMARK 265 MODELS THAT GAVE SIMILAR GOOD FITS TO THE X-RAY AND NEUTRON DATA. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IGA RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN A1 REMARK 900 RELATED ID: 1R70 RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN A2 DBREF 2OCW A 1 585 UNP P01833 PIGR_HUMAN 19 603 SEQRES 1 A 585 LYS SER PRO ILE PHE GLY PRO GLU GLU VAL ASN SER VAL SEQRES 2 A 585 GLU GLY ASN SER VAL SER ILE THR CYS TYR TYR PRO PRO SEQRES 3 A 585 THR SER VAL ASN ARG HIS THR ARG LYS TYR TRP CYS ARG SEQRES 4 A 585 GLN GLY ALA ARG GLY GLY CYS ILE THR LEU ILE SER SER SEQRES 5 A 585 GLU GLY TYR VAL SER SER LYS TYR ALA GLY ARG ALA ASN SEQRES 6 A 585 LEU THR ASN PHE PRO GLU ASN GLY THR PHE VAL VAL ASN SEQRES 7 A 585 ILE ALA GLN LEU SER GLN ASP ASP SER GLY ARG TYR LYS SEQRES 8 A 585 CYS GLY LEU GLY ILE ASN SER ARG GLY LEU SER PHE ASP SEQRES 9 A 585 VAL SER LEU GLU VAL SER GLN GLY PRO GLY LEU LEU ASN SEQRES 10 A 585 ASP THR LYS VAL TYR THR VAL ASP LEU GLY ARG THR VAL SEQRES 11 A 585 THR ILE ASN CYS PRO PHE LYS THR GLU ASN ALA GLN LYS SEQRES 12 A 585 ARG LYS SER LEU TYR LYS GLN ILE GLY LEU TYR PRO VAL SEQRES 13 A 585 LEU VAL ILE ASP SER SER GLY TYR VAL ASN PRO ASN TYR SEQRES 14 A 585 THR GLY ARG ILE ARG LEU ASP ILE GLN GLY THR GLY GLN SEQRES 15 A 585 LEU LEU PHE SER VAL VAL ILE ASN GLN LEU ARG LEU SER SEQRES 16 A 585 ASP ALA GLY GLN TYR LEU CYS GLN ALA GLY ASP ASP SER SEQRES 17 A 585 ASN SER ASN LYS LYS ASN ALA ASP LEU GLN VAL LEU LYS SEQRES 18 A 585 PRO GLU PRO GLU LEU VAL TYR GLU ASP LEU ARG GLY SER SEQRES 19 A 585 VAL THR PHE HIS CYS ALA LEU GLY PRO GLU VAL ALA ASN SEQRES 20 A 585 VAL ALA LYS PHE LEU CYS ARG GLN SER SER GLY GLU ASN SEQRES 21 A 585 CYS ASP VAL VAL VAL ASN THR LEU GLY LYS ARG ALA PRO SEQRES 22 A 585 ALA PHE GLU GLY ARG ILE LEU LEU ASN PRO GLN ASP LYS SEQRES 23 A 585 ASP GLY SER PHE SER VAL VAL ILE THR GLY LEU ARG LYS SEQRES 24 A 585 GLU ASP ALA GLY ARG TYR LEU CYS GLY ALA HIS SER ASP SEQRES 25 A 585 GLY GLN LEU GLN GLU GLY SER PRO ILE GLN ALA TRP GLN SEQRES 26 A 585 LEU PHE VAL ASN GLU GLU SER THR ILE PRO ARG SER PRO SEQRES 27 A 585 THR VAL VAL LYS GLY VAL ALA GLY SER SER VAL ALA VAL SEQRES 28 A 585 LEU CYS PRO TYR ASN ARG LYS GLU SER LYS SER ILE LYS SEQRES 29 A 585 TYR TRP CYS LEU TRP GLU GLY ALA GLN ASN GLY ARG CYS SEQRES 30 A 585 PRO LEU LEU VAL ASP SER GLU GLY TRP VAL LYS ALA GLN SEQRES 31 A 585 TYR GLU GLY ARG LEU SER LEU LEU GLU GLU PRO GLY ASN SEQRES 32 A 585 GLY THR PHE THR VAL ILE LEU ASN GLN LEU THR SER ARG SEQRES 33 A 585 ASP ALA GLY PHE TYR TRP CYS LEU THR ASN GLY ASP THR SEQRES 34 A 585 LEU TRP ARG THR THR VAL GLU ILE LYS ILE ILE GLU GLY SEQRES 35 A 585 GLU PRO ASN LEU LYS VAL PRO GLY ASN VAL THR ALA VAL SEQRES 36 A 585 LEU GLY GLU THR LEU LYS VAL PRO CYS HIS PHE PRO CYS SEQRES 37 A 585 LYS PHE SER SER TYR GLU LYS TYR TRP CYS LYS TRP ASN SEQRES 38 A 585 ASN THR GLY CYS GLN ALA LEU PRO SER GLN ASP GLU GLY SEQRES 39 A 585 PRO SER LYS ALA PHE VAL ASN CYS ASP GLU ASN SER ARG SEQRES 40 A 585 LEU VAL SER LEU THR LEU ASN LEU VAL THR ARG ALA ASP SEQRES 41 A 585 GLU GLY TRP TYR TRP CYS GLY VAL LYS GLN GLY HIS PHE SEQRES 42 A 585 TYR GLY GLU THR ALA ALA VAL TYR VAL ALA VAL GLU GLU SEQRES 43 A 585 ARG LYS ALA ALA GLY SER ARG ASP VAL SER LEU ALA LYS SEQRES 44 A 585 ALA ASP ALA ALA PRO ASP GLU LYS VAL LEU ASP SER GLY SEQRES 45 A 585 PHE ARG GLU ILE GLU ASN LYS ALA ILE GLN ASP PRO ARG CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000