PDB Short entry for 2OFN HEADER ISOMERASE 04-JAN-07 2OFN TITLE SOLUTION STRUCTURE OF FK506-BINDING DOMAIN (FKBD)OF FKBP35 FROM TITLE 2 PLASMODIUM FALCIPARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 70 KDA PEPTIDYLPROLYL ISOMERASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FK-506 BINDING DOMAIN; COMPND 5 SYNONYM: FKBP35, FK506-BINDING PROTEIN 35; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET29 KEYWDS BETA BARREL, CENTRAL HELIX, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.B.KANG,H.YE,H.R.YOON,H.S.YOON REVDAT 5 14-JUN-23 2OFN 1 REMARK REVDAT 4 26-FEB-20 2OFN 1 REMARK SEQADV REVDAT 3 13-JUL-11 2OFN 1 VERSN REVDAT 2 24-FEB-09 2OFN 1 VERSN REVDAT 1 25-DEC-07 2OFN 0 JRNL AUTH C.B.KANG,H.YE,H.R.YOON,H.S.YOON JRNL TITL SOLUTION STRUCTURE OF FK506 BINDING DOMAIN (FKBD) OF JRNL TITL 2 PLASMODIUM FALCIPARUM FK506 BINDING PROTEIN 35 (PFFKBP35). JRNL REF PROTEINS V. 70 300 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17876830 JRNL DOI 10.1002/PROT.21623 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, CYANA 2.1, ARIA 1.2, CNS 1.1 REMARK 3 AUTHORS : BRUKER (TOPSPIN), GUNTERT (CYANA), REMARK 3 LINGE;O'DONOGHUE;NILGES (ARIA), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OFN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041075. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20MM SODIUM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM PFFKBP35FKBD U-15N, 13C; REMARK 210 20MM SODIUM PHOSPHATE (PH 6.8); REMARK 210 1MM DTT; 20MM NACL; 0.01% NAN3; REMARK 210 100% D2O; 0.5MM PFFKBP35FKBD U- REMARK 210 15N, 13C; 20MM SODIUM PHOSPHATE REMARK 210 (PH 6.8); 1MM DTT; 20MM NACL; REMARK 210 0.01% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, NMRVIEW 5.2.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE3 LYS A 36 HG3 GLU A 70 1.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 12 69.50 65.01 REMARK 500 1 ILE A 75 -73.20 -95.93 REMARK 500 1 LYS A 76 -44.30 -138.16 REMARK 500 1 TYR A 101 47.31 -93.36 REMARK 500 1 GLU A 108 -68.82 -121.47 REMARK 500 1 SER A 109 -74.99 -79.65 REMARK 500 1 ARG A 126 109.16 -161.97 REMARK 500 1 HIS A 130 73.84 -108.78 REMARK 500 2 THR A 3 -66.03 -150.68 REMARK 500 2 GLU A 6 34.80 -91.88 REMARK 500 2 ALA A 14 1.30 -69.43 REMARK 500 2 ASP A 27 -76.00 -128.77 REMARK 500 2 ASN A 32 77.37 -111.79 REMARK 500 2 THR A 51 -30.81 -134.05 REMARK 500 2 GLU A 70 73.11 56.97 REMARK 500 2 ILE A 75 -62.75 -99.37 REMARK 500 2 LYS A 76 -66.81 -125.92 REMARK 500 2 GLU A 108 -71.57 -81.18 REMARK 500 2 SER A 109 -72.08 -104.86 REMARK 500 2 PRO A 111 -83.29 -83.06 REMARK 500 2 LEU A 128 -37.67 -156.87 REMARK 500 3 GLU A 4 125.99 70.82 REMARK 500 3 GLU A 6 44.05 -85.45 REMARK 500 3 ASP A 27 -65.92 -92.55 REMARK 500 3 ILE A 75 -62.74 -97.17 REMARK 500 3 LYS A 76 -61.85 -129.20 REMARK 500 3 TYR A 101 30.43 -92.89 REMARK 500 3 SER A 109 -73.75 -110.99 REMARK 500 3 SER A 114 -163.69 -119.70 REMARK 500 3 LEU A 128 52.88 -140.30 REMARK 500 3 GLU A 129 -176.13 76.27 REMARK 500 4 LEU A 23 -63.08 -106.03 REMARK 500 4 ILE A 75 -61.29 -96.02 REMARK 500 4 LYS A 76 -44.69 -143.18 REMARK 500 4 SER A 109 -75.22 -108.22 REMARK 500 4 GLU A 129 158.87 73.67 REMARK 500 5 THR A 3 78.34 57.94 REMARK 500 5 GLU A 6 46.08 -84.56 REMARK 500 5 LEU A 23 -70.80 -99.18 REMARK 500 5 PRO A 34 92.54 -69.96 REMARK 500 5 LYS A 76 -61.06 -140.00 REMARK 500 5 SER A 84 31.18 -96.09 REMARK 500 5 GLU A 108 -71.93 -68.63 REMARK 500 5 SER A 109 -75.32 -111.55 REMARK 500 5 ILE A 110 83.66 -154.03 REMARK 500 5 HIS A 132 -168.71 63.63 REMARK 500 6 LEU A 23 -69.32 -132.72 REMARK 500 6 ASN A 32 79.21 -105.50 REMARK 500 6 ASN A 62 -60.63 -121.29 REMARK 500 6 ILE A 75 -68.70 -96.50 REMARK 500 REMARK 500 THIS ENTRY HAS 213 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED SHEETS 5A, 6A, B5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15038 RELATED DB: BMRB DBREF 2OFN A 1 127 UNP Q8I4V8 Q8I4V8_PLAF7 1 127 SEQADV 2OFN LEU A 128 UNP Q8I4V8 EXPRESSION TAG SEQADV 2OFN GLU A 129 UNP Q8I4V8 EXPRESSION TAG SEQADV 2OFN HIS A 130 UNP Q8I4V8 EXPRESSION TAG SEQADV 2OFN HIS A 131 UNP Q8I4V8 EXPRESSION TAG SEQADV 2OFN HIS A 132 UNP Q8I4V8 EXPRESSION TAG SEQADV 2OFN HIS A 133 UNP Q8I4V8 EXPRESSION TAG SEQADV 2OFN HIS A 134 UNP Q8I4V8 EXPRESSION TAG SEQADV 2OFN HIS A 135 UNP Q8I4V8 EXPRESSION TAG SEQRES 1 A 135 MET THR THR GLU GLN GLU PHE GLU LYS VAL GLU LEU THR SEQRES 2 A 135 ALA ASP GLY GLY VAL ILE LYS THR ILE LEU LYS LYS GLY SEQRES 3 A 135 ASP GLU GLY GLU GLU ASN ILE PRO LYS LYS GLY ASN GLU SEQRES 4 A 135 VAL THR VAL HIS TYR VAL GLY LYS LEU GLU SER THR GLY SEQRES 5 A 135 LYS VAL PHE ASP SER SER PHE ASP ARG ASN VAL PRO PHE SEQRES 6 A 135 LYS PHE HIS LEU GLU GLN GLY GLU VAL ILE LYS GLY TRP SEQRES 7 A 135 ASP ILE CYS VAL SER SER MET ARG LYS ASN GLU LYS CYS SEQRES 8 A 135 LEU VAL ARG ILE GLU SER MET TYR GLY TYR GLY ASP GLU SEQRES 9 A 135 GLY CYS GLY GLU SER ILE PRO GLY ASN SER VAL LEU LEU SEQRES 10 A 135 PHE GLU ILE GLU LEU LEU SER PHE ARG GLU LEU GLU HIS SEQRES 11 A 135 HIS HIS HIS HIS HIS HELIX 1 1 LYS A 76 SER A 83 1 8 SHEET 1 A 6 LYS A 9 VAL A 10 0 SHEET 2 A 6 LYS A 20 LYS A 24 -1 O LYS A 20 N VAL A 10 SHEET 3 A 6 LYS A 90 ILE A 95 -1 O LEU A 92 N THR A 21 SHEET 4 A 6 LEU A 116 ARG A 126 -1 O LEU A 116 N ILE A 95 SHEET 5 A 6 GLU A 39 LEU A 48 -1 N THR A 41 O SER A 124 SHEET 6 A 6 PHE A 65 PHE A 67 -1 SHEET 1 B 6 LYS A 9 VAL A 10 0 SHEET 2 B 6 LYS A 20 LYS A 24 -1 O LYS A 20 N VAL A 10 SHEET 3 B 6 LYS A 90 ILE A 95 -1 O LEU A 92 N THR A 21 SHEET 4 B 6 LEU A 116 ARG A 126 -1 O LEU A 116 N ILE A 95 SHEET 5 B 6 GLU A 39 LEU A 48 -1 N LYS A 47 O LEU A 117 SHEET 6 B 6 LYS A 53 VAL A 54 -1 O LYS A 53 N LEU A 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000