PDB Short entry for 2OH2 HEADER TRANSFERASE/DNA 09-JAN-07 2OH2 TITLE TERNARY COMPLEX OF HUMAN DNA POLYMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*GP*G*GP*GP*AP*AP*GP*GP*AP*CP*CP*C)-3'; COMPND 3 CHAIN: S, P; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*TP*T*CP*CP*AP*GP*GP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)- COMPND 7 3'; COMPND 8 CHAIN: Q, T; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA POLYMERASE KAPPA; COMPND 12 CHAIN: A, B; COMPND 13 SYNONYM: DINB PROTEIN, DINP; COMPND 14 EC: 2.7.7.7; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: POLK, DINB1; SOURCE 10 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 11 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BJ5464 KEYWDS DNA POLYMERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.LONE,S.A.TOWNSON,S.N.ULJON,S.PRAKASH,L.PRAKASH,A.K.AGGARWAL REVDAT 4 27-DEC-23 2OH2 1 REMARK LINK REVDAT 3 24-JAN-18 2OH2 1 AUTHOR REVDAT 2 24-FEB-09 2OH2 1 VERSN REVDAT 1 27-FEB-07 2OH2 0 JRNL AUTH S.LONE,S.A.TOWNSON,S.N.ULJON,R.E.JOHNSON,A.BRAHMA,D.T.NAIR, JRNL AUTH 2 S.PRAKASH,L.PRAKASH,A.K.AGGARWAL JRNL TITL TERNARY COMPLEX OF THE CATALYTIC CORE OF HUMAN DNA JRNL TITL 2 POLYMERASE KAPPA WITH DNA AND DTT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 35239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3531 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6496 REMARK 3 NUCLEIC ACID ATOMS : 1006 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : 0.51 REMARK 3 LOW RESOLUTION CUTOFF (A) : 3.05 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.61 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.077 REMARK 3 BOND ANGLES (DEGREES) : 1.380 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.48 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.037 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OH2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37424 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.69450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 108.69450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.07500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.23600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.07500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.23600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.69450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.07500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.23600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.69450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.07500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.23600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: S, Q, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, T, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DG S 1 REMARK 465 DG S 2 REMARK 465 DG S 3 REMARK 465 DT Q 1 REMARK 465 DT Q 2 REMARK 465 DC Q 16 REMARK 465 DC Q 17 REMARK 465 DC Q 18 REMARK 465 DG P 1 REMARK 465 DT T 1 REMARK 465 DT T 2 REMARK 465 DC T 18 REMARK 465 MET A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 21 REMARK 465 ASN A 22 REMARK 465 ASP A 23 REMARK 465 ASN A 24 REMARK 465 LYS A 25 REMARK 465 ALA A 26 REMARK 465 GLY A 27 REMARK 465 MET A 28 REMARK 465 GLU A 29 REMARK 465 GLY A 30 REMARK 465 LEU A 31 REMARK 465 ASP A 32 REMARK 465 MET A 225 REMARK 465 GLY A 226 REMARK 465 SER A 227 REMARK 465 SER A 228 REMARK 465 VAL A 229 REMARK 465 GLU A 230 REMARK 465 ASN A 231 REMARK 465 ASP A 232 REMARK 465 ASN A 233 REMARK 465 PRO A 234 REMARK 465 GLY A 235 REMARK 465 LYS A 236 REMARK 465 GLU A 237 REMARK 465 VAL A 238 REMARK 465 ASN A 239 REMARK 465 LYS A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLU A 243 REMARK 465 HIS A 244 REMARK 465 GLU A 245 REMARK 465 ARG A 246 REMARK 465 SER A 247 REMARK 465 ILE A 248 REMARK 465 SER A 249 REMARK 465 PRO A 250 REMARK 465 LEU A 251 REMARK 465 LEU A 252 REMARK 465 PHE A 253 REMARK 465 GLU A 254 REMARK 465 GLU A 255 REMARK 465 SER A 256 REMARK 465 PRO A 257 REMARK 465 SER A 258 REMARK 465 ASP A 259 REMARK 465 VAL A 260 REMARK 465 GLN A 261 REMARK 465 PRO A 262 REMARK 465 PRO A 263 REMARK 465 GLY A 264 REMARK 465 ASP A 265 REMARK 465 PRO A 266 REMARK 465 PHE A 267 REMARK 465 GLN A 268 REMARK 465 VAL A 269 REMARK 465 ASN A 270 REMARK 465 PHE A 271 REMARK 465 GLU A 272 REMARK 465 GLU A 273 REMARK 465 GLN A 274 REMARK 465 ASN A 275 REMARK 465 ASN A 276 REMARK 465 PRO A 277 REMARK 465 GLN A 278 REMARK 465 ILE A 279 REMARK 465 LEU A 280 REMARK 465 GLN A 281 REMARK 465 ASN A 518 REMARK 465 GLU A 519 REMARK 465 GLU A 520 REMARK 465 ASP A 521 REMARK 465 ARG A 522 REMARK 465 LYS A 523 REMARK 465 HIS A 524 REMARK 465 GLN A 525 REMARK 465 GLN A 526 REMARK 465 MET B 19 REMARK 465 GLY B 20 REMARK 465 MET B 225 REMARK 465 GLY B 226 REMARK 465 SER B 227 REMARK 465 SER B 228 REMARK 465 VAL B 229 REMARK 465 GLU B 230 REMARK 465 ASN B 231 REMARK 465 ASP B 232 REMARK 465 ASN B 233 REMARK 465 PRO B 234 REMARK 465 GLY B 235 REMARK 465 LYS B 236 REMARK 465 GLU B 237 REMARK 465 VAL B 238 REMARK 465 ASN B 239 REMARK 465 LYS B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 465 GLU B 243 REMARK 465 HIS B 244 REMARK 465 GLU B 245 REMARK 465 ARG B 246 REMARK 465 SER B 247 REMARK 465 ILE B 248 REMARK 465 SER B 249 REMARK 465 PRO B 250 REMARK 465 LEU B 251 REMARK 465 LEU B 252 REMARK 465 PHE B 253 REMARK 465 GLU B 254 REMARK 465 GLU B 255 REMARK 465 SER B 256 REMARK 465 PRO B 257 REMARK 465 SER B 258 REMARK 465 ASP B 259 REMARK 465 VAL B 260 REMARK 465 GLN B 261 REMARK 465 PRO B 262 REMARK 465 PRO B 263 REMARK 465 GLY B 264 REMARK 465 ASP B 265 REMARK 465 PRO B 266 REMARK 465 PHE B 267 REMARK 465 GLN B 268 REMARK 465 VAL B 269 REMARK 465 ASN B 270 REMARK 465 PHE B 271 REMARK 465 GLU B 272 REMARK 465 GLU B 273 REMARK 465 GLN B 274 REMARK 465 ASN B 275 REMARK 465 ASN B 276 REMARK 465 PRO B 277 REMARK 465 GLN B 278 REMARK 465 ILE B 279 REMARK 465 LEU B 280 REMARK 465 GLN B 281 REMARK 465 ASN B 518 REMARK 465 GLU B 519 REMARK 465 GLU B 520 REMARK 465 ASP B 521 REMARK 465 ARG B 522 REMARK 465 LYS B 523 REMARK 465 HIS B 524 REMARK 465 GLN B 525 REMARK 465 GLN B 526 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DG S 4 P OP1 OP2 REMARK 470 DC S 13 O3' REMARK 470 DC Q 3 P OP1 OP2 REMARK 470 DG P 2 P OP1 OP2 REMARK 470 DC P 13 O3' REMARK 470 DC T 3 P OP1 OP2 REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 ASN A 37 CG OD1 ND2 REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 ILE A 40 CG1 CG2 CD1 REMARK 470 MET A 41 CG SD CE REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 SER A 47 OG REMARK 470 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 50 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 GLN A 59 CG CD OE1 NE2 REMARK 470 GLN A 73 CG CD OE1 NE2 REMARK 470 GLN A 77 CG CD OE1 NE2 REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 ASP A 125 CG OD1 OD2 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 212 CG CD OE1 NE2 REMARK 470 ASN A 213 CG OD1 ND2 REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 ARG A 220 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 222 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 LYS A 347 CG CD CE NZ REMARK 470 LYS A 359 CG CD CE NZ REMARK 470 GLU A 389 CG CD OE1 OE2 REMARK 470 ARG A 409 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 410 CG OD1 OD2 REMARK 470 GLU A 412 CG CD OE1 OE2 REMARK 470 GLU A 429 CG CD OE1 OE2 REMARK 470 GLU A 430 CG CD OE1 OE2 REMARK 470 GLN A 436 CG CD OE1 NE2 REMARK 470 GLU A 441 CG CD OE1 OE2 REMARK 470 GLN A 447 CG CD OE1 NE2 REMARK 470 GLU A 449 CG CD OE1 OE2 REMARK 470 ARG A 450 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 451 CG CD1 CD2 REMARK 470 GLU A 466 CG CD OE1 OE2 REMARK 470 SER A 476 OG REMARK 470 LYS A 489 CG CD CE NZ REMARK 470 GLU A 490 CG CD OE1 OE2 REMARK 470 LYS A 493 CG CD CE NZ REMARK 470 ASP A 499 CG OD1 OD2 REMARK 470 LEU B 21 CG CD1 CD2 REMARK 470 ASN B 22 CG OD1 ND2 REMARK 470 ASP B 23 CG OD1 OD2 REMARK 470 ASN B 24 CG OD1 ND2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 ASP B 32 CG OD1 OD2 REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 ILE B 36 CG1 CG2 CD1 REMARK 470 ASN B 37 CG OD1 ND2 REMARK 470 LYS B 38 CG CD CE NZ REMARK 470 ILE B 39 CG1 CG2 CD1 REMARK 470 ILE B 40 CG1 CG2 CD1 REMARK 470 MET B 41 CG SD CE REMARK 470 GLU B 42 CG CD OE1 OE2 REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 SER B 47 OG REMARK 470 ARG B 48 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 GLN B 59 CG CD OE1 NE2 REMARK 470 GLN B 77 CG CD OE1 NE2 REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 GLN B 95 CG CD OE1 NE2 REMARK 470 MET B 117 CG SD CE REMARK 470 ASN B 120 CG OD1 ND2 REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 ASP B 125 CG OD1 OD2 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 ARG B 145 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 149 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 GLN B 163 CG CD OE1 NE2 REMARK 470 ASP B 172 CG OD1 OD2 REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 LYS B 182 CG CD CE NZ REMARK 470 LYS B 206 CG CD CE NZ REMARK 470 GLU B 209 CG CD OE1 OE2 REMARK 470 GLU B 210 CG CD OE1 OE2 REMARK 470 GLU B 216 CG CD OE1 OE2 REMARK 470 ARG B 220 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 223 CG1 CG2 CD1 REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 ASN B 282 CG OD1 ND2 REMARK 470 SER B 283 OG REMARK 470 VAL B 284 CG1 CG2 REMARK 470 VAL B 285 CG1 CG2 REMARK 470 LYS B 295 CG CD CE NZ REMARK 470 GLN B 303 CG CD OE1 NE2 REMARK 470 LYS B 347 CG CD CE NZ REMARK 470 ARG B 352 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 359 CG CD CE NZ REMARK 470 ASP B 410 CG OD1 OD2 REMARK 470 GLU B 412 CG CD OE1 OE2 REMARK 470 GLU B 429 CG CD OE1 OE2 REMARK 470 ARG B 450 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 466 CG CD OE1 OE2 REMARK 470 LYS B 489 CG CD CE NZ REMARK 470 GLU B 490 CG CD OE1 OE2 REMARK 470 LYS B 493 CG CD CE NZ REMARK 470 ASP B 497 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 329 C - N - CA ANGL. DEV. = -12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 37 -3.29 -56.06 REMARK 500 LYS A 45 -74.31 -20.65 REMARK 500 MET A 67 -60.73 -100.32 REMARK 500 ALA A 72 -33.38 -36.99 REMARK 500 GLN A 73 37.23 -84.12 REMARK 500 GLN A 85 -73.20 -57.44 REMARK 500 PHE A 111 -72.49 -29.62 REMARK 500 LYS A 124 -74.96 -27.30 REMARK 500 MET A 135 129.09 -174.38 REMARK 500 ASN A 140 173.22 -58.04 REMARK 500 ASP A 189 83.43 -172.50 REMARK 500 PRO A 190 -7.34 -52.58 REMARK 500 MET A 193 99.49 80.05 REMARK 500 ASN A 203 71.95 -108.10 REMARK 500 ILE A 204 13.88 -68.07 REMARK 500 ASN A 213 55.06 -116.81 REMARK 500 SER A 283 -142.30 -145.12 REMARK 500 THR A 306 -8.89 84.97 REMARK 500 LYS A 328 -42.83 -6.81 REMARK 500 PRO A 337 14.63 -64.00 REMARK 500 ASP A 410 103.99 -57.21 REMARK 500 GLU A 424 131.60 -29.55 REMARK 500 ASN A 462 173.20 -49.68 REMARK 500 THR A 469 101.21 -177.36 REMARK 500 SER A 472 117.02 173.27 REMARK 500 SER A 475 51.65 -147.83 REMARK 500 VAL A 477 93.92 81.92 REMARK 500 VAL A 478 -176.56 -62.53 REMARK 500 SER A 479 -61.42 177.67 REMARK 500 PHE A 500 -76.05 34.97 REMARK 500 SER A 515 71.09 78.04 REMARK 500 ASP B 23 127.99 113.51 REMARK 500 ASN B 24 -148.28 -116.55 REMARK 500 ALA B 26 61.15 -159.80 REMARK 500 LYS B 33 -2.04 -52.82 REMARK 500 ASN B 37 9.73 -63.28 REMARK 500 LYS B 45 -86.77 -9.67 REMARK 500 SER B 47 131.56 -32.97 REMARK 500 PHE B 111 -93.08 -9.61 REMARK 500 GLU B 116 0.95 -57.36 REMARK 500 ASN B 120 55.80 -169.04 REMARK 500 PRO B 121 -12.43 -39.43 REMARK 500 LEU B 123 29.21 -140.12 REMARK 500 LYS B 124 32.40 -90.33 REMARK 500 ASP B 125 -10.21 -148.93 REMARK 500 THR B 138 -172.41 -174.38 REMARK 500 VAL B 148 90.62 -56.36 REMARK 500 CYS B 161 72.48 -175.48 REMARK 500 GLN B 163 42.43 -85.34 REMARK 500 ASP B 189 113.78 -168.06 REMARK 500 REMARK 500 THIS ENTRY HAS 78 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC S 12 0.07 SIDE CHAIN REMARK 500 DG Q 8 0.07 SIDE CHAIN REMARK 500 DC P 12 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 872 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD1 REMARK 620 2 ASP A 107 OD2 44.8 REMARK 620 3 MET A 108 O 71.9 111.8 REMARK 620 4 ASP A 198 OD2 105.0 81.3 96.1 REMARK 620 5 TTP A 873 O1A 108.6 76.1 162.9 100.1 REMARK 620 6 TTP A 873 O2B 132.9 148.8 89.5 120.2 77.8 REMARK 620 7 TTP A 873 O3G 67.3 88.7 87.7 169.9 77.2 69.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 873 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 107 OD1 REMARK 620 2 ASP B 107 OD2 45.4 REMARK 620 3 MET B 108 O 67.3 107.5 REMARK 620 4 ASP B 198 OD2 78.9 78.3 63.5 REMARK 620 5 TTP B 874 O3G 103.4 92.2 132.0 164.2 REMARK 620 6 TTP B 874 O1A 119.6 75.7 138.0 76.9 88.7 REMARK 620 7 TTP B 874 O2B 148.9 161.0 81.9 91.9 93.4 86.3 REMARK 620 8 TTP B 874 O2G 94.2 123.6 77.7 140.4 55.4 136.7 74.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 872 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 873 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 873 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP B 874 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T94 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC CORE OF HUMAN DNA POLYMERASE REMARK 900 KAPPA DBREF 2OH2 A 19 526 UNP Q9UBT6 POLK_HUMAN 19 526 DBREF 2OH2 B 19 526 UNP Q9UBT6 POLK_HUMAN 19 526 DBREF 2OH2 S 1 13 PDB 2OH2 2OH2 1 13 DBREF 2OH2 Q 1 18 PDB 2OH2 2OH2 1 18 DBREF 2OH2 P 1 13 PDB 2OH2 2OH2 1 13 DBREF 2OH2 T 1 18 PDB 2OH2 2OH2 1 18 SEQRES 1 S 13 DG DG DG DG DG DA DA DG DG DA DC DC DC SEQRES 1 Q 18 DT DT DC DC DA DG DG DG DT DC DC DT DT SEQRES 2 Q 18 DC DC DC DC DC SEQRES 1 P 13 DG DG DG DG DG DA DA DG DG DA DC DC DC SEQRES 1 T 18 DT DT DC DC DA DG DG DG DT DC DC DT DT SEQRES 2 T 18 DC DC DC DC DC SEQRES 1 A 508 MET GLY LEU ASN ASP ASN LYS ALA GLY MET GLU GLY LEU SEQRES 2 A 508 ASP LYS GLU LYS ILE ASN LYS ILE ILE MET GLU ALA THR SEQRES 3 A 508 LYS GLY SER ARG PHE TYR GLY ASN GLU LEU LYS LYS GLU SEQRES 4 A 508 LYS GLN VAL ASN GLN ARG ILE GLU ASN MET MET GLN GLN SEQRES 5 A 508 LYS ALA GLN ILE THR SER GLN GLN LEU ARG LYS ALA GLN SEQRES 6 A 508 LEU GLN VAL ASP ARG PHE ALA MET GLU LEU GLU GLN SER SEQRES 7 A 508 ARG ASN LEU SER ASN THR ILE VAL HIS ILE ASP MET ASP SEQRES 8 A 508 ALA PHE TYR ALA ALA VAL GLU MET ARG ASP ASN PRO GLU SEQRES 9 A 508 LEU LYS ASP LYS PRO ILE ALA VAL GLY SER MET SER MET SEQRES 10 A 508 LEU SER THR SER ASN TYR HIS ALA ARG ARG PHE GLY VAL SEQRES 11 A 508 ARG ALA ALA MET PRO GLY PHE ILE ALA LYS ARG LEU CYS SEQRES 12 A 508 PRO GLN LEU ILE ILE VAL PRO PRO ASN PHE ASP LYS TYR SEQRES 13 A 508 ARG ALA VAL SER LYS GLU VAL LYS GLU ILE LEU ALA ASP SEQRES 14 A 508 TYR ASP PRO ASN PHE MET ALA MET SER LEU ASP GLU ALA SEQRES 15 A 508 TYR LEU ASN ILE THR LYS HIS LEU GLU GLU ARG GLN ASN SEQRES 16 A 508 TRP PRO GLU ASP LYS ARG ARG TYR PHE ILE LYS MET GLY SEQRES 17 A 508 SER SER VAL GLU ASN ASP ASN PRO GLY LYS GLU VAL ASN SEQRES 18 A 508 LYS LEU SER GLU HIS GLU ARG SER ILE SER PRO LEU LEU SEQRES 19 A 508 PHE GLU GLU SER PRO SER ASP VAL GLN PRO PRO GLY ASP SEQRES 20 A 508 PRO PHE GLN VAL ASN PHE GLU GLU GLN ASN ASN PRO GLN SEQRES 21 A 508 ILE LEU GLN ASN SER VAL VAL PHE GLY THR SER ALA GLN SEQRES 22 A 508 GLU VAL VAL LYS GLU ILE ARG PHE ARG ILE GLU GLN LYS SEQRES 23 A 508 THR THR LEU THR ALA SER ALA GLY ILE ALA PRO ASN THR SEQRES 24 A 508 MET LEU ALA LYS VAL CYS SER ASP LYS ASN LYS PRO ASN SEQRES 25 A 508 GLY GLN TYR GLN ILE LEU PRO ASN ARG GLN ALA VAL MET SEQRES 26 A 508 ASP PHE ILE LYS ASP LEU PRO ILE ARG LYS VAL SER GLY SEQRES 27 A 508 ILE GLY LYS VAL THR GLU LYS MET LEU LYS ALA LEU GLY SEQRES 28 A 508 ILE ILE THR CYS THR GLU LEU TYR GLN GLN ARG ALA LEU SEQRES 29 A 508 LEU SER LEU LEU PHE SER GLU THR SER TRP HIS TYR PHE SEQRES 30 A 508 LEU HIS ILE SER LEU GLY LEU GLY SER THR HIS LEU THR SEQRES 31 A 508 ARG ASP GLY GLU ARG LYS SER MET SER VAL GLU ARG THR SEQRES 32 A 508 PHE SER GLU ILE ASN LYS ALA GLU GLU GLN TYR SER LEU SEQRES 33 A 508 CYS GLN GLU LEU CYS SER GLU LEU ALA GLN ASP LEU GLN SEQRES 34 A 508 LYS GLU ARG LEU LYS GLY ARG THR VAL THR ILE LYS LEU SEQRES 35 A 508 LYS ASN VAL ASN PHE GLU VAL LYS THR ARG ALA SER THR SEQRES 36 A 508 VAL SER SER VAL VAL SER THR ALA GLU GLU ILE PHE ALA SEQRES 37 A 508 ILE ALA LYS GLU LEU LEU LYS THR GLU ILE ASP ALA ASP SEQRES 38 A 508 PHE PRO HIS PRO LEU ARG LEU ARG LEU MET GLY VAL ARG SEQRES 39 A 508 ILE SER SER PHE PRO ASN GLU GLU ASP ARG LYS HIS GLN SEQRES 40 A 508 GLN SEQRES 1 B 508 MET GLY LEU ASN ASP ASN LYS ALA GLY MET GLU GLY LEU SEQRES 2 B 508 ASP LYS GLU LYS ILE ASN LYS ILE ILE MET GLU ALA THR SEQRES 3 B 508 LYS GLY SER ARG PHE TYR GLY ASN GLU LEU LYS LYS GLU SEQRES 4 B 508 LYS GLN VAL ASN GLN ARG ILE GLU ASN MET MET GLN GLN SEQRES 5 B 508 LYS ALA GLN ILE THR SER GLN GLN LEU ARG LYS ALA GLN SEQRES 6 B 508 LEU GLN VAL ASP ARG PHE ALA MET GLU LEU GLU GLN SER SEQRES 7 B 508 ARG ASN LEU SER ASN THR ILE VAL HIS ILE ASP MET ASP SEQRES 8 B 508 ALA PHE TYR ALA ALA VAL GLU MET ARG ASP ASN PRO GLU SEQRES 9 B 508 LEU LYS ASP LYS PRO ILE ALA VAL GLY SER MET SER MET SEQRES 10 B 508 LEU SER THR SER ASN TYR HIS ALA ARG ARG PHE GLY VAL SEQRES 11 B 508 ARG ALA ALA MET PRO GLY PHE ILE ALA LYS ARG LEU CYS SEQRES 12 B 508 PRO GLN LEU ILE ILE VAL PRO PRO ASN PHE ASP LYS TYR SEQRES 13 B 508 ARG ALA VAL SER LYS GLU VAL LYS GLU ILE LEU ALA ASP SEQRES 14 B 508 TYR ASP PRO ASN PHE MET ALA MET SER LEU ASP GLU ALA SEQRES 15 B 508 TYR LEU ASN ILE THR LYS HIS LEU GLU GLU ARG GLN ASN SEQRES 16 B 508 TRP PRO GLU ASP LYS ARG ARG TYR PHE ILE LYS MET GLY SEQRES 17 B 508 SER SER VAL GLU ASN ASP ASN PRO GLY LYS GLU VAL ASN SEQRES 18 B 508 LYS LEU SER GLU HIS GLU ARG SER ILE SER PRO LEU LEU SEQRES 19 B 508 PHE GLU GLU SER PRO SER ASP VAL GLN PRO PRO GLY ASP SEQRES 20 B 508 PRO PHE GLN VAL ASN PHE GLU GLU GLN ASN ASN PRO GLN SEQRES 21 B 508 ILE LEU GLN ASN SER VAL VAL PHE GLY THR SER ALA GLN SEQRES 22 B 508 GLU VAL VAL LYS GLU ILE ARG PHE ARG ILE GLU GLN LYS SEQRES 23 B 508 THR THR LEU THR ALA SER ALA GLY ILE ALA PRO ASN THR SEQRES 24 B 508 MET LEU ALA LYS VAL CYS SER ASP LYS ASN LYS PRO ASN SEQRES 25 B 508 GLY GLN TYR GLN ILE LEU PRO ASN ARG GLN ALA VAL MET SEQRES 26 B 508 ASP PHE ILE LYS ASP LEU PRO ILE ARG LYS VAL SER GLY SEQRES 27 B 508 ILE GLY LYS VAL THR GLU LYS MET LEU LYS ALA LEU GLY SEQRES 28 B 508 ILE ILE THR CYS THR GLU LEU TYR GLN GLN ARG ALA LEU SEQRES 29 B 508 LEU SER LEU LEU PHE SER GLU THR SER TRP HIS TYR PHE SEQRES 30 B 508 LEU HIS ILE SER LEU GLY LEU GLY SER THR HIS LEU THR SEQRES 31 B 508 ARG ASP GLY GLU ARG LYS SER MET SER VAL GLU ARG THR SEQRES 32 B 508 PHE SER GLU ILE ASN LYS ALA GLU GLU GLN TYR SER LEU SEQRES 33 B 508 CYS GLN GLU LEU CYS SER GLU LEU ALA GLN ASP LEU GLN SEQRES 34 B 508 LYS GLU ARG LEU LYS GLY ARG THR VAL THR ILE LYS LEU SEQRES 35 B 508 LYS ASN VAL ASN PHE GLU VAL LYS THR ARG ALA SER THR SEQRES 36 B 508 VAL SER SER VAL VAL SER THR ALA GLU GLU ILE PHE ALA SEQRES 37 B 508 ILE ALA LYS GLU LEU LEU LYS THR GLU ILE ASP ALA ASP SEQRES 38 B 508 PHE PRO HIS PRO LEU ARG LEU ARG LEU MET GLY VAL ARG SEQRES 39 B 508 ILE SER SER PHE PRO ASN GLU GLU ASP ARG LYS HIS GLN SEQRES 40 B 508 GLN HET MG A 872 1 HET TTP A 873 29 HET MG B 873 1 HET TTP B 874 29 HETNAM MG MAGNESIUM ION HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE FORMUL 7 MG 2(MG 2+) FORMUL 8 TTP 2(C10 H17 N2 O14 P3) FORMUL 11 HOH *21(H2 O) HELIX 1 1 LYS A 35 ALA A 43 1 9 HELIX 2 2 SER A 47 GLN A 73 1 27 HELIX 3 3 THR A 75 SER A 96 1 22 HELIX 4 4 ALA A 110 ASN A 120 1 11 HELIX 5 5 PRO A 121 LYS A 124 5 4 HELIX 6 6 ASN A 140 PHE A 146 1 7 HELIX 7 7 PRO A 153 CYS A 161 1 9 HELIX 8 8 ASN A 170 ASP A 187 1 18 HELIX 9 9 ILE A 204 GLN A 212 1 9 HELIX 10 10 ASN A 213 TRP A 214 5 2 HELIX 11 11 PRO A 215 LYS A 218 5 4 HELIX 12 12 SER A 289 THR A 306 1 18 HELIX 13 13 ASN A 316 SER A 324 1 9 HELIX 14 14 ASN A 338 LYS A 347 1 10 HELIX 15 15 PRO A 350 VAL A 354 5 5 HELIX 16 16 GLY A 358 LEU A 368 1 11 HELIX 17 17 THR A 372 GLN A 379 1 8 HELIX 18 18 GLN A 379 PHE A 387 1 9 HELIX 19 19 SER A 388 LEU A 400 1 13 HELIX 20 20 LYS A 427 LYS A 448 1 22 HELIX 21 21 THR A 480 ALA A 498 1 19 HELIX 22 22 ASP B 32 THR B 44 1 13 HELIX 23 23 SER B 47 GLN B 73 1 27 HELIX 24 24 THR B 75 SER B 96 1 22 HELIX 25 25 ALA B 110 GLU B 116 1 7 HELIX 26 26 ASN B 120 LYS B 124 5 5 HELIX 27 27 PRO B 153 ARG B 159 1 7 HELIX 28 28 ASN B 170 ASP B 189 1 20 HELIX 29 29 ILE B 204 GLN B 212 1 9 HELIX 30 30 SER B 289 THR B 306 1 18 HELIX 31 31 ASN B 316 ASP B 325 1 10 HELIX 32 32 ASN B 338 LYS B 347 1 10 HELIX 33 33 GLY B 358 LEU B 368 1 11 HELIX 34 34 THR B 372 GLN B 379 1 8 HELIX 35 35 GLN B 379 PHE B 387 1 9 HELIX 36 36 SER B 388 GLY B 401 1 14 HELIX 37 37 LYS B 427 LEU B 446 1 20 HELIX 38 38 THR B 480 ALA B 498 1 19 SHEET 1 A 5 ALA A 194 SER A 196 0 SHEET 2 A 5 GLU A 199 ASN A 203 -1 O GLU A 199 N SER A 196 SHEET 3 A 5 ILE A 103 MET A 108 -1 N ILE A 106 O ALA A 200 SHEET 4 A 5 ALA A 309 ALA A 314 -1 O SER A 310 N ASP A 107 SHEET 5 A 5 GLN A 332 GLN A 334 1 O TYR A 333 N ILE A 313 SHEET 1 B 3 MET A 135 SER A 139 0 SHEET 2 B 3 ILE A 128 SER A 132 -1 N VAL A 130 O SER A 137 SHEET 3 B 3 ILE A 165 VAL A 167 1 O VAL A 167 N ALA A 129 SHEET 1 C 2 ARG A 220 TYR A 221 0 SHEET 2 C 2 VAL A 284 VAL A 285 -1 O VAL A 284 N TYR A 221 SHEET 1 D 4 SER A 415 ILE A 425 0 SHEET 2 D 4 LEU A 506 SER A 514 -1 O VAL A 511 N VAL A 418 SHEET 3 D 4 THR A 455 LYS A 461 -1 N THR A 457 O ARG A 512 SHEET 4 D 4 VAL A 467 LYS A 468 -1 O LYS A 468 N LEU A 460 SHEET 1 E 4 GLU B 199 LEU B 202 0 SHEET 2 E 4 ILE B 103 MET B 108 -1 N ILE B 106 O ALA B 200 SHEET 3 E 4 ALA B 309 ALA B 314 -1 O SER B 310 N ASP B 107 SHEET 4 E 4 GLN B 332 GLN B 334 1 O TYR B 333 N ILE B 313 SHEET 1 F 3 LEU B 136 SER B 139 0 SHEET 2 F 3 ILE B 128 GLY B 131 -1 N VAL B 130 O SER B 137 SHEET 3 F 3 ILE B 165 VAL B 167 1 O VAL B 167 N GLY B 131 SHEET 1 G 4 SER B 415 ILE B 425 0 SHEET 2 G 4 LEU B 506 SER B 514 -1 O ARG B 507 N PHE B 422 SHEET 3 G 4 GLY B 453 ASN B 462 -1 N THR B 457 O ARG B 512 SHEET 4 G 4 VAL B 467 LYS B 468 -1 O LYS B 468 N LEU B 460 SHEET 1 H 4 SER B 415 ILE B 425 0 SHEET 2 H 4 LEU B 506 SER B 514 -1 O ARG B 507 N PHE B 422 SHEET 3 H 4 GLY B 453 ASN B 462 -1 N THR B 457 O ARG B 512 SHEET 4 H 4 ALA B 471 VAL B 478 -1 O VAL B 474 N ARG B 454 LINK OD1 ASP A 107 MG MG A 872 1555 1555 2.24 LINK OD2 ASP A 107 MG MG A 872 1555 1555 3.10 LINK O MET A 108 MG MG A 872 1555 1555 2.32 LINK OD2 ASP A 198 MG MG A 872 1555 1555 1.99 LINK MG MG A 872 O1A TTP A 873 1555 1555 2.44 LINK MG MG A 872 O2B TTP A 873 1555 1555 1.78 LINK MG MG A 872 O3G TTP A 873 1555 1555 2.57 LINK OD1 ASP B 107 MG MG B 873 1555 1555 2.11 LINK OD2 ASP B 107 MG MG B 873 1555 1555 3.07 LINK O MET B 108 MG MG B 873 1555 1555 2.52 LINK OD2 ASP B 198 MG MG B 873 1555 1555 2.82 LINK MG MG B 873 O3G TTP B 874 1555 1555 2.65 LINK MG MG B 873 O1A TTP B 874 1555 1555 1.96 LINK MG MG B 873 O2B TTP B 874 1555 1555 1.84 LINK MG MG B 873 O2G TTP B 874 1555 1555 2.86 SITE 1 AC1 4 ASP A 107 MET A 108 ASP A 198 TTP A 873 SITE 1 AC2 5 ASP B 107 MET B 108 ASP B 198 LYS B 328 SITE 2 AC2 5 TTP B 874 SITE 1 AC3 15 ASP A 107 MET A 108 ASP A 109 ALA A 110 SITE 2 AC3 15 PHE A 111 TYR A 112 SER A 137 THR A 138 SITE 3 AC3 15 TYR A 141 ARG A 144 ASP A 198 LYS A 328 SITE 4 AC3 15 MG A 872 DA Q 5 DC S 13 SITE 1 AC4 18 ALA B 26 ASP B 107 MET B 108 ASP B 109 SITE 2 AC4 18 ALA B 110 PHE B 111 TYR B 112 SER B 137 SITE 3 AC4 18 THR B 138 TYR B 141 ARG B 144 ASP B 198 SITE 4 AC4 18 GLU B 199 LYS B 328 MG B 873 HOH B 883 SITE 5 AC4 18 DC P 13 DA T 5 CRYST1 116.150 152.472 217.389 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008610 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006559 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004600 0.00000