PDB Short entry for 2ONI HEADER LIGASE 24-JAN-07 2ONI TITLE CATALYTIC DOMAIN OF THE HUMAN NEDD4-LIKE E3 LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE NEDD4-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HECT DOMAIN (UBIQUITIN TRANSFERASE); COMPND 5 SYNONYM: NEDD4-2, NEDD4.2, NEDD4-LIKE UBIQUITIN-PROTEIN LIGASE, COMPND 6 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED 4- COMPND 7 LIKE, UBIQUITIN-PROTEIN LIGASE NEDD4-LIKE, DEVELOPMENTALLY DOWN- COMPND 8 REGULATED GENE 4-LIKE, UBIQUITIN-PROTEIN LIGASE RSP5; COMPND 9 EC: 6.3.2.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NEDD4L, KIAA0439, NEDL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-LIC-TEV KEYWDS ALPHA AND BETA PROTEIN (A + B), E3 LIGASE, HECT DOMAIN, UBL- KEYWDS 2 CONJUGATION PATHWAY, STRUCTURAL GENOMICS CONSORTIUM, SGC, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,G.V.AVVAKUMOV,S.XUE,C.BUTLER-COLE,J.WEIGELT,M.SUNDSTROM, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 4 27-DEC-23 2ONI 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2ONI 1 VERSN REVDAT 2 24-FEB-09 2ONI 1 VERSN REVDAT 1 17-APR-07 2ONI 0 JRNL AUTH J.R.WALKER,G.V.AVVAKUMOV,S.XUE,C.BUTLER-COLE,J.WEIGELT, JRNL AUTH 2 M.SUNDSTROM,C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV, JRNL AUTH 3 S.DHE-PAGANON JRNL TITL NEDD4-LIKE E3 UBIQUITIN-PROTEIN LIGASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1534 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1999 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3121 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 0.32000 REMARK 3 B12 (A**2) : -0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.098 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3227 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4366 ; 1.543 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 379 ; 6.255 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;35.573 ;23.895 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 552 ;16.588 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.987 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 450 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2514 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1422 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2185 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 149 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.189 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.128 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1890 ; 1.982 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3049 ; 3.051 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1395 ; 4.779 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1317 ; 6.441 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 569 A 581 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7551 -1.5570 28.3163 REMARK 3 T TENSOR REMARK 3 T11: -0.1042 T22: -0.1044 REMARK 3 T33: -0.0098 T12: -0.1604 REMARK 3 T13: -0.0348 T23: -0.0803 REMARK 3 L TENSOR REMARK 3 L11: 12.4108 L22: 7.0261 REMARK 3 L33: 13.2238 L12: 0.0868 REMARK 3 L13: 2.9256 L23: -0.3953 REMARK 3 S TENSOR REMARK 3 S11: -0.4705 S12: -0.1507 S13: 0.0302 REMARK 3 S21: -0.0822 S22: 0.3553 S23: 0.7278 REMARK 3 S31: 0.1024 S32: -1.0959 S33: 0.1151 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 582 A 596 REMARK 3 ORIGIN FOR THE GROUP (A): 40.4319 -2.8564 20.2299 REMARK 3 T TENSOR REMARK 3 T11: -0.0388 T22: -0.0177 REMARK 3 T33: 0.0318 T12: -0.0038 REMARK 3 T13: 0.1693 T23: -0.0840 REMARK 3 L TENSOR REMARK 3 L11: 10.6657 L22: 3.6650 REMARK 3 L33: 0.6758 L12: 4.5535 REMARK 3 L13: -2.3455 L23: -0.4768 REMARK 3 S TENSOR REMARK 3 S11: -0.5038 S12: 0.2670 S13: -1.4198 REMARK 3 S21: -0.4948 S22: 0.2004 S23: -0.7857 REMARK 3 S31: 0.7806 S32: 0.3876 S33: 0.3034 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 597 A 602 REMARK 3 ORIGIN FOR THE GROUP (A): 52.2751 12.6031 27.3664 REMARK 3 T TENSOR REMARK 3 T11: -0.1433 T22: 0.3233 REMARK 3 T33: -0.0684 T12: 0.0319 REMARK 3 T13: 0.0060 T23: -0.1578 REMARK 3 L TENSOR REMARK 3 L11: 13.8757 L22: 5.4226 REMARK 3 L33: 10.1241 L12: -1.3556 REMARK 3 L13: 0.7071 L23: 5.0018 REMARK 3 S TENSOR REMARK 3 S11: -0.1382 S12: -1.0408 S13: -0.5227 REMARK 3 S21: -0.0975 S22: 0.6821 S23: -0.2548 REMARK 3 S31: 0.5894 S32: 0.6845 S33: -0.5439 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 603 A 614 REMARK 3 ORIGIN FOR THE GROUP (A): 46.9027 22.4572 25.8022 REMARK 3 T TENSOR REMARK 3 T11: -0.1739 T22: 0.0938 REMARK 3 T33: 0.0544 T12: -0.1894 REMARK 3 T13: -0.0079 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 5.0324 L22: 11.2999 REMARK 3 L33: 11.9262 L12: -3.8128 REMARK 3 L13: -2.2470 L23: 5.2290 REMARK 3 S TENSOR REMARK 3 S11: -0.0385 S12: -0.3031 S13: 0.7266 REMARK 3 S21: -0.1691 S22: 0.5804 S23: -0.7227 REMARK 3 S31: -0.8740 S32: 1.1894 S33: -0.5419 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 615 A 632 REMARK 3 ORIGIN FOR THE GROUP (A): 48.3781 9.3338 22.6907 REMARK 3 T TENSOR REMARK 3 T11: -0.1300 T22: 0.0890 REMARK 3 T33: 0.0051 T12: -0.0025 REMARK 3 T13: 0.0601 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 8.2062 L22: 7.7935 REMARK 3 L33: 5.7063 L12: -3.1649 REMARK 3 L13: -2.7627 L23: 2.0024 REMARK 3 S TENSOR REMARK 3 S11: -0.7462 S12: -0.2234 S13: -0.6202 REMARK 3 S21: 0.3161 S22: 0.7611 S23: -0.2868 REMARK 3 S31: 0.5378 S32: 0.3296 S33: -0.0149 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 633 A 654 REMARK 3 ORIGIN FOR THE GROUP (A): 42.8673 14.6018 33.6976 REMARK 3 T TENSOR REMARK 3 T11: -0.0346 T22: 0.0144 REMARK 3 T33: -0.0505 T12: -0.0107 REMARK 3 T13: 0.0132 T23: -0.0544 REMARK 3 L TENSOR REMARK 3 L11: 8.6995 L22: 11.3100 REMARK 3 L33: 10.3884 L12: -0.7775 REMARK 3 L13: -1.0093 L23: -4.5304 REMARK 3 S TENSOR REMARK 3 S11: -0.8784 S12: -0.9265 S13: -0.3383 REMARK 3 S21: 1.1319 S22: 0.4367 S23: -0.7665 REMARK 3 S31: 0.1847 S32: 0.4520 S33: 0.4417 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 655 A 675 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8766 25.6388 23.9102 REMARK 3 T TENSOR REMARK 3 T11: -0.1072 T22: -0.0595 REMARK 3 T33: -0.0815 T12: -0.0538 REMARK 3 T13: -0.0894 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 4.3869 L22: 3.0544 REMARK 3 L33: 4.8386 L12: 1.1979 REMARK 3 L13: 0.8204 L23: 1.0055 REMARK 3 S TENSOR REMARK 3 S11: -0.2013 S12: -0.1679 S13: 0.1928 REMARK 3 S21: 0.0031 S22: 0.1578 S23: 0.1659 REMARK 3 S31: -0.1123 S32: 0.1353 S33: 0.0435 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 676 A 717 REMARK 3 ORIGIN FOR THE GROUP (A): 33.4041 17.9500 19.1085 REMARK 3 T TENSOR REMARK 3 T11: -0.0130 T22: 0.0450 REMARK 3 T33: -0.0590 T12: -0.1482 REMARK 3 T13: -0.0199 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 2.5393 L22: 3.6520 REMARK 3 L33: 2.5857 L12: -0.1883 REMARK 3 L13: -0.6127 L23: -1.5469 REMARK 3 S TENSOR REMARK 3 S11: -0.1329 S12: 0.1447 S13: -0.0002 REMARK 3 S21: -0.1844 S22: 0.1015 S23: -0.1559 REMARK 3 S31: -0.0561 S32: -0.0030 S33: 0.0314 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 718 A 729 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3479 14.1132 13.6871 REMARK 3 T TENSOR REMARK 3 T11: -0.0755 T22: 0.0596 REMARK 3 T33: -0.0862 T12: -0.1608 REMARK 3 T13: -0.1231 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 12.3525 L22: 4.4625 REMARK 3 L33: 2.0696 L12: -5.4265 REMARK 3 L13: 0.2394 L23: -0.5349 REMARK 3 S TENSOR REMARK 3 S11: 0.1501 S12: 0.0449 S13: -0.6011 REMARK 3 S21: -0.3246 S22: 0.0136 S23: 0.5698 REMARK 3 S31: 0.0253 S32: -0.2884 S33: -0.1637 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 730 A 746 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3917 23.0670 17.6543 REMARK 3 T TENSOR REMARK 3 T11: -0.1075 T22: 0.3234 REMARK 3 T33: -0.0380 T12: -0.0502 REMARK 3 T13: -0.0550 T23: 0.0766 REMARK 3 L TENSOR REMARK 3 L11: 20.9688 L22: 1.2909 REMARK 3 L33: 4.5667 L12: -4.9232 REMARK 3 L13: 6.4611 L23: -1.4171 REMARK 3 S TENSOR REMARK 3 S11: -0.3216 S12: -1.5948 S13: -0.3175 REMARK 3 S21: 0.1556 S22: 0.5212 S23: 0.1539 REMARK 3 S31: -0.3043 S32: -0.8156 S33: -0.1996 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 747 A 756 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4019 31.2111 7.3363 REMARK 3 T TENSOR REMARK 3 T11: -0.0397 T22: 0.1758 REMARK 3 T33: -0.0931 T12: 0.0638 REMARK 3 T13: -0.0879 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 21.4227 L22: 5.0560 REMARK 3 L33: 4.8757 L12: 3.5034 REMARK 3 L13: -5.2492 L23: -1.5896 REMARK 3 S TENSOR REMARK 3 S11: -0.1162 S12: -0.2956 S13: 1.1683 REMARK 3 S21: 0.2210 S22: 0.3468 S23: 0.7684 REMARK 3 S31: -0.2018 S32: -1.0180 S33: -0.2306 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 757 A 776 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2110 35.4581 7.0517 REMARK 3 T TENSOR REMARK 3 T11: 0.0545 T22: -0.0566 REMARK 3 T33: 0.0487 T12: -0.0011 REMARK 3 T13: -0.1290 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 8.7622 L22: 0.5545 REMARK 3 L33: 7.8870 L12: 1.3285 REMARK 3 L13: 6.5066 L23: 2.0252 REMARK 3 S TENSOR REMARK 3 S11: -0.2960 S12: 0.0519 S13: 1.3156 REMARK 3 S21: -0.0867 S22: -0.2011 S23: 0.0794 REMARK 3 S31: -0.7892 S32: 0.0337 S33: 0.4971 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 777 A 783 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3119 27.1786 1.9750 REMARK 3 T TENSOR REMARK 3 T11: -0.0002 T22: 0.3694 REMARK 3 T33: -0.0191 T12: 0.0327 REMARK 3 T13: -0.1493 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 26.7290 L22: 23.5360 REMARK 3 L33: 9.1139 L12: 11.5321 REMARK 3 L13: -2.9905 L23: -5.4550 REMARK 3 S TENSOR REMARK 3 S11: 0.7430 S12: -0.4327 S13: 1.0312 REMARK 3 S21: 0.2386 S22: -0.0244 S23: 2.0651 REMARK 3 S31: -0.1256 S32: -1.4662 S33: -0.7186 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 784 A 804 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2738 22.8963 8.6933 REMARK 3 T TENSOR REMARK 3 T11: -0.0124 T22: 0.0341 REMARK 3 T33: -0.1731 T12: -0.0829 REMARK 3 T13: -0.1155 T23: 0.0691 REMARK 3 L TENSOR REMARK 3 L11: 9.9029 L22: 1.7936 REMARK 3 L33: 2.6105 L12: -3.1602 REMARK 3 L13: 3.5309 L23: -0.1706 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: 0.2792 S13: 0.0453 REMARK 3 S21: -0.3118 S22: -0.0119 S23: 0.0931 REMARK 3 S31: 0.0977 S32: -0.1678 S33: -0.0220 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 805 A 820 REMARK 3 ORIGIN FOR THE GROUP (A): 34.5860 8.7346 13.2680 REMARK 3 T TENSOR REMARK 3 T11: 0.0180 T22: 0.0373 REMARK 3 T33: -0.1075 T12: -0.1391 REMARK 3 T13: 0.0131 T23: -0.0799 REMARK 3 L TENSOR REMARK 3 L11: 5.1398 L22: 9.6094 REMARK 3 L33: 3.7026 L12: 0.9624 REMARK 3 L13: 0.5046 L23: 0.2718 REMARK 3 S TENSOR REMARK 3 S11: -0.2382 S12: 0.4158 S13: -0.6002 REMARK 3 S21: -0.7162 S22: 0.1924 S23: -0.4647 REMARK 3 S31: 0.5929 S32: 0.0315 S33: 0.0458 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 821 A 851 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8381 16.4042 35.8544 REMARK 3 T TENSOR REMARK 3 T11: -0.1155 T22: -0.0473 REMARK 3 T33: -0.0472 T12: -0.0930 REMARK 3 T13: -0.0347 T23: 0.0824 REMARK 3 L TENSOR REMARK 3 L11: 1.6705 L22: 4.2577 REMARK 3 L33: 7.0346 L12: -1.2429 REMARK 3 L13: -2.1394 L23: 5.1546 REMARK 3 S TENSOR REMARK 3 S11: -0.3384 S12: -0.0425 S13: -0.0374 REMARK 3 S21: 0.0297 S22: 0.1615 S23: 0.3672 REMARK 3 S31: 0.2221 S32: 0.3643 S33: 0.1770 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 852 A 902 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0195 24.9361 44.2222 REMARK 3 T TENSOR REMARK 3 T11: -0.1694 T22: 0.0177 REMARK 3 T33: 0.0226 T12: -0.0312 REMARK 3 T13: -0.0243 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 2.6872 L22: 2.1513 REMARK 3 L33: 7.0390 L12: -0.0289 REMARK 3 L13: -1.3037 L23: -0.0807 REMARK 3 S TENSOR REMARK 3 S11: -0.0599 S12: 0.1637 S13: 0.0627 REMARK 3 S21: -0.3060 S22: -0.1270 S23: 0.0191 REMARK 3 S31: -0.1383 S32: 0.3094 S33: 0.1869 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 903 A 915 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3923 32.4695 49.8233 REMARK 3 T TENSOR REMARK 3 T11: -0.0821 T22: -0.0489 REMARK 3 T33: 0.1206 T12: 0.0303 REMARK 3 T13: -0.0551 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 6.9500 L22: 3.5019 REMARK 3 L33: 4.3250 L12: -0.3674 REMARK 3 L13: 1.0512 L23: 2.5306 REMARK 3 S TENSOR REMARK 3 S11: -0.0872 S12: -0.3171 S13: 0.5741 REMARK 3 S21: -0.0804 S22: -0.0844 S23: 0.5213 REMARK 3 S31: -0.5806 S32: -0.2046 S33: 0.1717 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 916 A 933 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2145 31.2540 47.3444 REMARK 3 T TENSOR REMARK 3 T11: -0.1777 T22: -0.1132 REMARK 3 T33: 0.0595 T12: 0.0218 REMARK 3 T13: -0.0884 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 4.8902 L22: 1.7792 REMARK 3 L33: 4.1192 L12: -1.1394 REMARK 3 L13: -1.2877 L23: 1.5778 REMARK 3 S TENSOR REMARK 3 S11: 0.1989 S12: 0.1845 S13: 0.7823 REMARK 3 S21: -0.2796 S22: 0.0284 S23: 0.5165 REMARK 3 S31: -0.6843 S32: -0.3794 S33: -0.2273 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 934 A 946 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5258 19.6910 47.7146 REMARK 3 T TENSOR REMARK 3 T11: -0.2628 T22: 0.0845 REMARK 3 T33: 0.1685 T12: -0.0237 REMARK 3 T13: -0.0847 T23: -0.0653 REMARK 3 L TENSOR REMARK 3 L11: 7.6942 L22: 6.5202 REMARK 3 L33: 12.6968 L12: 1.1604 REMARK 3 L13: 2.3767 L23: -3.5725 REMARK 3 S TENSOR REMARK 3 S11: -0.0700 S12: 0.5288 S13: -0.2594 REMARK 3 S21: -0.1570 S22: -0.0131 S23: 0.7206 REMARK 3 S31: 0.5127 S32: -0.4752 S33: 0.0831 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS REMARK 4 REMARK 4 2ONI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97922 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SI(111) REMARK 200 DOUBLE-CRYSTAL SYSTEM REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29656 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 35.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.84000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN WAS DISSOLVED AT 10 MG/ML REMARK 280 IN 10 MM TRIS-HCL, PH 8.0, 100 MM NACL, 2% GLYCEROL AND 1 MM REMARK 280 DTT. CRYSTALS WERE GROWN BY VAPOR DIFFUSION, HANGING DROPS BY REMARK 280 MIXING 2 MICROL PROTEIN SOLUTION WITH 2 MICROL WELL SOLUTION REMARK 280 (1.7 M SODIUM/POTASSIUM PHOSPHATE, PH 6.0, 1 MM DTT) AT REMARK 280 TEMPERATURE 294.0K. FOR CRYOPROTECTION, THE CRYSTALS WERE SOAKED REMARK 280 IN 2 M SODIUM-POTASSIUM PHOSPHATE, PH 7.0, 1 MM DTT, 25% REMARK 280 ETHYLENE GLYCOL AND 2 MG/ML SEMETNEDD4L.574.947. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.10700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 91.10700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 91.10700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 91.10700 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 91.10700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 91.10700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 91.10700 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 97930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 103.05800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 51.52900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 89.25085 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 51.52900 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 89.25085 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 91.10700 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 103.05800 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 91.10700 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 91.10700 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 556 REMARK 465 HIS A 557 REMARK 465 HIS A 558 REMARK 465 HIS A 559 REMARK 465 HIS A 560 REMARK 465 HIS A 561 REMARK 465 HIS A 562 REMARK 465 SER A 563 REMARK 465 SER A 564 REMARK 465 GLY A 565 REMARK 465 ARG A 566 REMARK 465 GLU A 567 REMARK 465 ASN A 568 REMARK 465 SER A 634 REMARK 465 ASN A 947 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 569 CG CD1 CD2 REMARK 470 GLN A 572 CD OE1 NE2 REMARK 470 LYS A 586 CD CE NZ REMARK 470 LYS A 589 CG CD CE NZ REMARK 470 LYS A 590 CG CD CE NZ REMARK 470 LYS A 619 CG CD CE NZ REMARK 470 LYS A 636 CG CD CE NZ REMARK 470 ASP A 639 CG OD1 OD2 REMARK 470 GLU A 684 CD OE1 OE2 REMARK 470 LYS A 741 CD CE NZ REMARK 470 ASN A 900 CG OD1 ND2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MSE A 778 N CA C O CB CG SE REMARK 480 MSE A 778 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 683 103.34 -161.57 REMARK 500 ASP A 733 89.49 -158.39 REMARK 500 VAL A 797 -55.36 -122.59 REMARK 500 ASN A 900 57.96 -110.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1000 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 883 O REMARK 620 2 THR A 921 O 86.0 REMARK 620 3 ASN A 924 OD1 99.6 78.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NSQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C2 DOMAIN OF THE HUMAN E3 UBIQUITIN- REMARK 900 PROTEIN LIGASE NEDD4-LIKE PROTEIN DBREF 2ONI A 574 947 UNP Q96PU5 NED4L_HUMAN 594 967 SEQADV 2ONI MSE A 556 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI HIS A 557 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI HIS A 558 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI HIS A 559 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI HIS A 560 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI HIS A 561 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI HIS A 562 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI SER A 563 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI SER A 564 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI GLY A 565 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI ARG A 566 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI GLU A 567 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI ASN A 568 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI LEU A 569 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI TYR A 570 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI PHE A 571 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI GLN A 572 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI GLY A 573 UNP Q96PU5 CLONING ARTIFACT SEQADV 2ONI MSE A 600 UNP Q96PU5 MET 620 MODIFIED RESIDUE SEQADV 2ONI MSE A 616 UNP Q96PU5 MET 636 MODIFIED RESIDUE SEQADV 2ONI MSE A 655 UNP Q96PU5 MET 675 MODIFIED RESIDUE SEQADV 2ONI MSE A 718 UNP Q96PU5 MET 738 MODIFIED RESIDUE SEQADV 2ONI MSE A 719 UNP Q96PU5 MET 739 MODIFIED RESIDUE SEQADV 2ONI MSE A 729 UNP Q96PU5 MET 749 MODIFIED RESIDUE SEQADV 2ONI MSE A 754 UNP Q96PU5 MET 774 MODIFIED RESIDUE SEQADV 2ONI MSE A 778 UNP Q96PU5 MET 798 MODIFIED RESIDUE SEQADV 2ONI MSE A 804 UNP Q96PU5 MET 824 MODIFIED RESIDUE SEQADV 2ONI MSE A 832 UNP Q96PU5 MET 852 MODIFIED RESIDUE SEQADV 2ONI MSE A 870 UNP Q96PU5 MET 890 MODIFIED RESIDUE SEQADV 2ONI MSE A 890 UNP Q96PU5 MET 910 MODIFIED RESIDUE SEQADV 2ONI MSE A 943 UNP Q96PU5 MET 963 MODIFIED RESIDUE SEQRES 1 A 392 MSE HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 392 LEU TYR PHE GLN GLY SER ARG GLU PHE LYS GLN LYS TYR SEQRES 3 A 392 ASP TYR PHE ARG LYS LYS LEU LYS LYS PRO ALA ASP ILE SEQRES 4 A 392 PRO ASN ARG PHE GLU MSE LYS LEU HIS ARG ASN ASN ILE SEQRES 5 A 392 PHE GLU GLU SER TYR ARG ARG ILE MSE SER VAL LYS ARG SEQRES 6 A 392 PRO ASP VAL LEU LYS ALA ARG LEU TRP ILE GLU PHE GLU SEQRES 7 A 392 SER GLU LYS GLY LEU ASP TYR GLY GLY VAL ALA ARG GLU SEQRES 8 A 392 TRP PHE PHE LEU LEU SER LYS GLU MSE PHE ASN PRO TYR SEQRES 9 A 392 TYR GLY LEU PHE GLU TYR SER ALA THR ASP ASN TYR THR SEQRES 10 A 392 LEU GLN ILE ASN PRO ASN SER GLY LEU CYS ASN GLU ASP SEQRES 11 A 392 HIS LEU SER TYR PHE THR PHE ILE GLY ARG VAL ALA GLY SEQRES 12 A 392 LEU ALA VAL PHE HIS GLY LYS LEU LEU ASP GLY PHE PHE SEQRES 13 A 392 ILE ARG PRO PHE TYR LYS MSE MSE LEU GLY LYS GLN ILE SEQRES 14 A 392 THR LEU ASN ASP MSE GLU SER VAL ASP SER GLU TYR TYR SEQRES 15 A 392 ASN SER LEU LYS TRP ILE LEU GLU ASN ASP PRO THR GLU SEQRES 16 A 392 LEU ASP LEU MSE PHE CYS ILE ASP GLU GLU ASN PHE GLY SEQRES 17 A 392 GLN THR TYR GLN VAL ASP LEU LYS PRO ASN GLY SER GLU SEQRES 18 A 392 ILE MSE VAL THR ASN GLU ASN LYS ARG GLU TYR ILE ASP SEQRES 19 A 392 LEU VAL ILE GLN TRP ARG PHE VAL ASN ARG VAL GLN LYS SEQRES 20 A 392 GLN MSE ASN ALA PHE LEU GLU GLY PHE THR GLU LEU LEU SEQRES 21 A 392 PRO ILE ASP LEU ILE LYS ILE PHE ASP GLU ASN GLU LEU SEQRES 22 A 392 GLU LEU LEU MSE CYS GLY LEU GLY ASP VAL ASP VAL ASN SEQRES 23 A 392 ASP TRP ARG GLN HIS SER ILE TYR LYS ASN GLY TYR CYS SEQRES 24 A 392 PRO ASN HIS PRO VAL ILE GLN TRP PHE TRP LYS ALA VAL SEQRES 25 A 392 LEU LEU MSE ASP ALA GLU LYS ARG ILE ARG LEU LEU GLN SEQRES 26 A 392 PHE VAL THR GLY THR SER ARG VAL PRO MSE ASN GLY PHE SEQRES 27 A 392 ALA GLU LEU TYR GLY SER ASN GLY PRO GLN LEU PHE THR SEQRES 28 A 392 ILE GLU GLN TRP GLY SER PRO GLU LYS LEU PRO ARG ALA SEQRES 29 A 392 HIS THR CYS PHE ASN ARG LEU ASP LEU PRO PRO TYR GLU SEQRES 30 A 392 THR PHE GLU ASP LEU ARG GLU LYS LEU LEU MSE ALA VAL SEQRES 31 A 392 GLU ASN MODRES 2ONI MSE A 600 MET SELENOMETHIONINE MODRES 2ONI MSE A 616 MET SELENOMETHIONINE MODRES 2ONI MSE A 655 MET SELENOMETHIONINE MODRES 2ONI MSE A 718 MET SELENOMETHIONINE MODRES 2ONI MSE A 719 MET SELENOMETHIONINE MODRES 2ONI MSE A 729 MET SELENOMETHIONINE MODRES 2ONI MSE A 754 MET SELENOMETHIONINE MODRES 2ONI MSE A 778 MET SELENOMETHIONINE MODRES 2ONI MSE A 804 MET SELENOMETHIONINE MODRES 2ONI MSE A 832 MET SELENOMETHIONINE MODRES 2ONI MSE A 870 MET SELENOMETHIONINE MODRES 2ONI MSE A 890 MET SELENOMETHIONINE MODRES 2ONI MSE A 943 MET SELENOMETHIONINE HET MSE A 600 8 HET MSE A 616 8 HET MSE A 655 8 HET MSE A 718 8 HET MSE A 719 8 HET MSE A 729 8 HET MSE A 754 8 HET MSE A 778 16 HET MSE A 804 8 HET MSE A 832 8 HET MSE A 870 8 HET MSE A 890 8 HET MSE A 943 8 HET NA A1000 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 NA NA 1+ FORMUL 3 HOH *119(H2 O) HELIX 1 1 GLY A 573 LEU A 588 1 16 HELIX 2 2 HIS A 603 ASN A 605 5 3 HELIX 3 3 ASN A 606 VAL A 618 1 13 HELIX 4 4 ARG A 620 ALA A 626 5 7 HELIX 5 5 ASP A 639 PHE A 656 1 18 HELIX 6 6 ASN A 657 GLY A 661 5 5 HELIX 7 7 ASN A 678 ASN A 683 1 6 HELIX 8 8 ASP A 685 GLY A 704 1 20 HELIX 9 9 ILE A 712 LEU A 720 1 9 HELIX 10 10 THR A 725 GLU A 730 5 6 HELIX 11 11 ASP A 733 ASN A 746 1 14 HELIX 12 12 PRO A 748 ASP A 752 5 5 HELIX 13 13 ASN A 773 ILE A 777 5 5 HELIX 14 14 ASN A 783 VAL A 797 1 15 HELIX 15 15 VAL A 800 LEU A 815 1 16 HELIX 16 16 PRO A 816 LYS A 821 1 6 HELIX 17 17 ASP A 824 GLY A 834 1 11 HELIX 18 18 ASP A 839 HIS A 846 1 8 HELIX 19 19 HIS A 857 MSE A 870 1 14 HELIX 20 20 ASP A 871 GLY A 884 1 14 HELIX 21 21 GLY A 892 GLU A 895 5 4 HELIX 22 22 THR A 921 PHE A 923 5 3 HELIX 23 23 THR A 933 GLU A 946 1 14 SHEET 1 A 2 ARG A 597 LEU A 602 0 SHEET 2 A 2 ARG A 627 PHE A 632 1 O GLU A 631 N MSE A 600 SHEET 1 B 2 PHE A 663 TYR A 665 0 SHEET 2 B 2 LEU A 673 ILE A 675 -1 O GLN A 674 N GLU A 664 SHEET 1 C 2 CYS A 756 ASN A 761 0 SHEET 2 C 2 GLN A 764 ASP A 769 -1 O GLN A 764 N ASN A 761 SHEET 1 D 4 ILE A 848 LYS A 850 0 SHEET 2 D 4 THR A 906 GLN A 909 1 O ILE A 907 N ILE A 848 SHEET 3 D 4 ARG A 925 LEU A 928 1 O LEU A 926 N THR A 906 SHEET 4 D 4 ARG A 918 HIS A 920 -1 N ARG A 918 O ASP A 927 SHEET 1 E 2 TYR A 897 GLY A 898 0 SHEET 2 E 2 GLY A 901 PRO A 902 -1 O GLY A 901 N GLY A 898 LINK C GLU A 599 N MSE A 600 1555 1555 1.33 LINK C MSE A 600 N ALYS A 601 1555 1555 1.33 LINK C MSE A 600 N BLYS A 601 1555 1555 1.33 LINK C ILE A 615 N MSE A 616 1555 1555 1.33 LINK C MSE A 616 N SER A 617 1555 1555 1.33 LINK C GLU A 654 N MSE A 655 1555 1555 1.33 LINK C MSE A 655 N PHE A 656 1555 1555 1.33 LINK C LYS A 717 N MSE A 718 1555 1555 1.34 LINK C MSE A 718 N MSE A 719 1555 1555 1.33 LINK C MSE A 719 N LEU A 720 1555 1555 1.33 LINK C ASP A 728 N MSE A 729 1555 1555 1.34 LINK C MSE A 729 N GLU A 730 1555 1555 1.33 LINK C LEU A 753 N MSE A 754 1555 1555 1.33 LINK C MSE A 754 N PHE A 755 1555 1555 1.33 LINK C ILE A 777 N AMSE A 778 1555 1555 1.32 LINK C ILE A 777 N BMSE A 778 1555 1555 1.27 LINK C BMSE A 778 N VAL A 779 1555 1555 1.32 LINK C AMSE A 778 N VAL A 779 1555 1555 1.32 LINK C GLN A 803 N MSE A 804 1555 1555 1.34 LINK C MSE A 804 N ASN A 805 1555 1555 1.35 LINK C LEU A 831 N MSE A 832 1555 1555 1.32 LINK C MSE A 832 N CYS A 833 1555 1555 1.33 LINK C LEU A 869 N MSE A 870 1555 1555 1.33 LINK C MSE A 870 N ASP A 871 1555 1555 1.33 LINK C PRO A 889 N MSE A 890 1555 1555 1.31 LINK C MSE A 890 N ASN A 891 1555 1555 1.33 LINK C LEU A 942 N MSE A 943 1555 1555 1.31 LINK C MSE A 943 N ALA A 944 1555 1555 1.32 LINK O THR A 883 NA NA A1000 1555 1555 2.45 LINK O THR A 921 NA NA A1000 1555 1555 2.71 LINK OD1 ASN A 924 NA NA A1000 1555 1555 2.51 SITE 1 AC1 4 THR A 883 TYR A 897 THR A 921 ASN A 924 CRYST1 103.058 103.058 182.214 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009703 0.005602 0.000000 0.00000 SCALE2 0.000000 0.011204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005488 0.00000