PDB Short entry for 2OO9 HEADER LIGASE 25-JAN-07 2OO9 TITLE CRYSTAL STRUCTURE OF THE UBA DOMAIN FROM HUMAN C-CBL UBIQUITIN LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE CBL; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UBA DOMAIN; COMPND 5 SYNONYM: SIGNAL TRANSDUCTION PROTEIN CBL, PROTO-ONCOGENE C-CBL, COMPND 6 CASITAS B-LINEAGE LYMPHOMA PROTO-ONCOGENE, RING FINGER PROTEIN 55; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CBL, CBL2, RNF55; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS ALPHA-HELICAL DOMAIN, HOMODIMER, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR G.KOZLOV,K.GEHRING REVDAT 4 27-DEC-23 2OO9 1 SEQADV LINK REVDAT 3 13-JUL-11 2OO9 1 VERSN REVDAT 2 05-AUG-08 2OO9 1 JRNL VERSN REVDAT 1 06-FEB-07 2OO9 0 JRNL AUTH G.KOZLOV,P.PESCHARD,B.ZIMMERMAN,T.LIN,T.MOLDOVEANU, JRNL AUTH 2 N.MANSUR-AZZAM,K.GEHRING,M.PARK JRNL TITL STRUCTURAL BASIS FOR UBA-MEDIATED DIMERIZATION OF C-CBL JRNL TITL 2 UBIQUITIN LIGASE. JRNL REF J.BIOL.CHEM. V. 282 27547 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17635922 JRNL DOI 10.1074/JBC.M703333200 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 11010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 549 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 756 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1019 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.835 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1025 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1374 ; 1.629 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 128 ; 5.994 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;46.971 ;27.170 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 197 ;16.050 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;14.416 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 156 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 760 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 480 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 732 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 69 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.276 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.133 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 682 ; 1.438 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1027 ; 1.628 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 400 ; 3.246 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 347 ; 4.460 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 854 A 871 REMARK 3 ORIGIN FOR THE GROUP (A): 45.1406 11.4035 -7.7750 REMARK 3 T TENSOR REMARK 3 T11: 0.0796 T22: 0.1337 REMARK 3 T33: 0.0919 T12: 0.0682 REMARK 3 T13: 0.0270 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 7.2972 L22: 7.1952 REMARK 3 L33: 3.7815 L12: 1.8672 REMARK 3 L13: -2.3453 L23: 0.9633 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: -0.6951 S13: 0.2421 REMARK 3 S21: 0.4754 S22: -0.0898 S23: -0.6628 REMARK 3 S31: 0.1400 S32: 0.6606 S33: 0.1041 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 872 A 888 REMARK 3 ORIGIN FOR THE GROUP (A): 35.4077 15.8709 -6.6453 REMARK 3 T TENSOR REMARK 3 T11: 0.1260 T22: 0.0270 REMARK 3 T33: 0.1620 T12: 0.0082 REMARK 3 T13: 0.0348 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 6.1718 L22: 5.7749 REMARK 3 L33: 8.4485 L12: -0.8709 REMARK 3 L13: -0.2174 L23: -1.6466 REMARK 3 S TENSOR REMARK 3 S11: 0.0624 S12: -0.0711 S13: 0.4633 REMARK 3 S21: 0.2618 S22: -0.1041 S23: -0.0410 REMARK 3 S31: -0.4878 S32: 0.0541 S33: 0.0416 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 889 A 899 REMARK 3 ORIGIN FOR THE GROUP (A): 34.1030 6.0618 -7.8236 REMARK 3 T TENSOR REMARK 3 T11: 0.1585 T22: 0.0217 REMARK 3 T33: 0.0743 T12: 0.0286 REMARK 3 T13: 0.0172 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 9.9151 L22: 5.4487 REMARK 3 L33: 5.9625 L12: 0.4411 REMARK 3 L13: -0.6762 L23: 0.7446 REMARK 3 S TENSOR REMARK 3 S11: 0.1140 S12: 0.2246 S13: -0.2932 REMARK 3 S21: -0.4604 S22: -0.0646 S23: -0.2643 REMARK 3 S31: 0.4856 S32: 0.1058 S33: -0.0494 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 855 B 869 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2895 11.8064 -8.8804 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.0603 REMARK 3 T33: 0.1146 T12: 0.0048 REMARK 3 T13: -0.1100 T23: -0.0536 REMARK 3 L TENSOR REMARK 3 L11: 7.9986 L22: 7.7563 REMARK 3 L33: 10.5265 L12: -5.5868 REMARK 3 L13: -3.7820 L23: 7.4551 REMARK 3 S TENSOR REMARK 3 S11: 0.4793 S12: 0.6742 S13: -0.3970 REMARK 3 S21: -0.3882 S22: -0.6605 S23: 0.7697 REMARK 3 S31: 0.0686 S32: -0.5491 S33: 0.1812 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 870 B 887 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8006 10.1206 -3.4513 REMARK 3 T TENSOR REMARK 3 T11: 0.1104 T22: 0.0860 REMARK 3 T33: 0.0960 T12: -0.0050 REMARK 3 T13: 0.0076 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 6.1723 L22: 6.6721 REMARK 3 L33: 5.1384 L12: -0.9863 REMARK 3 L13: 1.0310 L23: 0.8976 REMARK 3 S TENSOR REMARK 3 S11: 0.2035 S12: -0.0534 S13: -0.1470 REMARK 3 S21: -0.0624 S22: -0.2300 S23: 0.2431 REMARK 3 S31: 0.3032 S32: 0.0783 S33: 0.0266 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 888 B 898 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7403 12.6598 -12.0456 REMARK 3 T TENSOR REMARK 3 T11: 0.1546 T22: 0.0520 REMARK 3 T33: 0.0465 T12: 0.0702 REMARK 3 T13: -0.0228 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 8.8063 L22: 4.1780 REMARK 3 L33: 7.5922 L12: -2.2353 REMARK 3 L13: -5.3998 L23: 1.3961 REMARK 3 S TENSOR REMARK 3 S11: 0.3656 S12: 0.7724 S13: -0.1451 REMARK 3 S21: -0.6463 S22: -0.4870 S23: 0.2455 REMARK 3 S31: -0.2345 S32: -0.2839 S33: 0.1214 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 858 C 866 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4034 25.7063 -10.6573 REMARK 3 T TENSOR REMARK 3 T11: 0.4064 T22: -0.0907 REMARK 3 T33: -0.0073 T12: 0.1891 REMARK 3 T13: -0.0538 T23: 0.0790 REMARK 3 L TENSOR REMARK 3 L11: 47.0947 L22: 6.9486 REMARK 3 L33: 12.4670 L12: 13.1544 REMARK 3 L13: 10.1230 L23: 3.4506 REMARK 3 S TENSOR REMARK 3 S11: -0.8431 S12: -0.1235 S13: 1.1377 REMARK 3 S21: 1.5179 S22: 0.7569 S23: 0.3309 REMARK 3 S31: -0.7462 S32: 0.0679 S33: 0.0862 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 867 C 886 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0634 26.3618 -20.1193 REMARK 3 T TENSOR REMARK 3 T11: 0.1971 T22: -0.0260 REMARK 3 T33: 0.1429 T12: -0.0735 REMARK 3 T13: -0.2504 T23: 0.2023 REMARK 3 L TENSOR REMARK 3 L11: 6.1863 L22: 15.3025 REMARK 3 L33: 18.1283 L12: -7.0284 REMARK 3 L13: -8.3532 L23: 4.8819 REMARK 3 S TENSOR REMARK 3 S11: -0.4899 S12: 0.0644 S13: 0.7439 REMARK 3 S21: 0.6798 S22: 0.7009 S23: -1.6864 REMARK 3 S31: -1.2267 S32: 1.3205 S33: -0.2110 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 887 C 898 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0314 29.7584 -22.9110 REMARK 3 T TENSOR REMARK 3 T11: 0.2503 T22: -0.1236 REMARK 3 T33: 0.0927 T12: 0.0242 REMARK 3 T13: -0.2900 T23: 0.0842 REMARK 3 L TENSOR REMARK 3 L11: 10.1474 L22: 17.5158 REMARK 3 L33: 26.8746 L12: -1.5406 REMARK 3 L13: 3.6223 L23: -0.3971 REMARK 3 S TENSOR REMARK 3 S11: -0.7685 S12: -0.2713 S13: 0.9653 REMARK 3 S21: 0.7834 S22: -0.1785 S23: -0.0477 REMARK 3 S31: -1.7758 S32: -0.3584 S33: 0.9470 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OO9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041381. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : SI (111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11572 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 58.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.31300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.8M SODIUM FORMATE, 0.1M TRIS, 4% REMARK 280 (V/V) GLYCEROL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.09700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.01250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.01250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.04850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.01250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.01250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.14550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.01250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.01250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 14.04850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.01250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.01250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.14550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 28.09700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -56.19400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 2 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 854 REMARK 465 SER B 899 REMARK 465 GLY C 854 REMARK 465 SER C 855 REMARK 465 GLN C 856 REMARK 465 LEU C 857 REMARK 465 SER C 899 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1 O HOH B 66 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 886 C GLU C 886 O 0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 883 19.66 55.69 REMARK 500 PHE B 895 -33.67 -130.97 REMARK 500 ALA C 881 8.26 -66.63 REMARK 500 ASN C 883 13.83 57.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OOA RELATED DB: PDB REMARK 900 RELATED ID: 2OOB RELATED DB: PDB DBREF 2OO9 A 856 895 UNP P22681 CBL_HUMAN 856 895 DBREF 2OO9 B 856 895 UNP P22681 CBL_HUMAN 856 895 DBREF 2OO9 C 856 895 UNP P22681 CBL_HUMAN 856 895 SEQADV 2OO9 GLY A 854 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 SER A 855 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 MSE A 865 UNP P22681 MET 865 MODIFIED RESIDUE SEQADV 2OO9 MSE A 887 UNP P22681 MET 887 MODIFIED RESIDUE SEQADV 2OO9 ALA A 896 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 ALA A 897 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 ALA A 898 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 SER A 899 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 GLY B 854 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 SER B 855 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 MSE B 865 UNP P22681 MET 865 MODIFIED RESIDUE SEQADV 2OO9 MSE B 887 UNP P22681 MET 887 MODIFIED RESIDUE SEQADV 2OO9 ALA B 896 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 ALA B 897 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 ALA B 898 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 SER B 899 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 GLY C 854 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 SER C 855 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 MSE C 865 UNP P22681 MET 865 MODIFIED RESIDUE SEQADV 2OO9 MSE C 887 UNP P22681 MET 887 MODIFIED RESIDUE SEQADV 2OO9 ALA C 896 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 ALA C 897 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 ALA C 898 UNP P22681 CLONING ARTIFACT SEQADV 2OO9 SER C 899 UNP P22681 CLONING ARTIFACT SEQRES 1 A 46 GLY SER GLN LEU SER SER GLU ILE GLU ASN LEU MSE SER SEQRES 2 A 46 GLN GLY TYR SER TYR GLN ASP ILE GLN LYS ALA LEU VAL SEQRES 3 A 46 ILE ALA GLN ASN ASN ILE GLU MSE ALA LYS ASN ILE LEU SEQRES 4 A 46 ARG GLU PHE ALA ALA ALA SER SEQRES 1 B 46 GLY SER GLN LEU SER SER GLU ILE GLU ASN LEU MSE SER SEQRES 2 B 46 GLN GLY TYR SER TYR GLN ASP ILE GLN LYS ALA LEU VAL SEQRES 3 B 46 ILE ALA GLN ASN ASN ILE GLU MSE ALA LYS ASN ILE LEU SEQRES 4 B 46 ARG GLU PHE ALA ALA ALA SER SEQRES 1 C 46 GLY SER GLN LEU SER SER GLU ILE GLU ASN LEU MSE SER SEQRES 2 C 46 GLN GLY TYR SER TYR GLN ASP ILE GLN LYS ALA LEU VAL SEQRES 3 C 46 ILE ALA GLN ASN ASN ILE GLU MSE ALA LYS ASN ILE LEU SEQRES 4 C 46 ARG GLU PHE ALA ALA ALA SER MODRES 2OO9 MSE A 865 MET SELENOMETHIONINE MODRES 2OO9 MSE A 887 MET SELENOMETHIONINE MODRES 2OO9 MSE B 865 MET SELENOMETHIONINE MODRES 2OO9 MSE B 887 MET SELENOMETHIONINE MODRES 2OO9 MSE C 865 MET SELENOMETHIONINE MODRES 2OO9 MSE C 887 MET SELENOMETHIONINE HET MSE A 865 8 HET MSE A 887 8 HET MSE B 865 8 HET MSE B 887 8 HET MSE C 865 8 HET MSE C 887 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 4 HOH *73(H2 O) HELIX 1 1 SER A 855 GLN A 867 1 13 HELIX 2 2 SER A 870 ALA A 881 1 12 HELIX 3 3 ASN A 884 ALA A 896 1 13 HELIX 4 4 SER B 855 GLY B 868 1 14 HELIX 5 5 SER B 870 ALA B 881 1 12 HELIX 6 6 ASN B 884 ALA B 896 1 13 HELIX 7 7 SER C 858 GLN C 867 1 10 HELIX 8 8 SER C 870 ALA C 881 1 12 HELIX 9 9 ASN C 884 ALA C 896 1 13 LINK C LEU A 864 N MSE A 865 1555 1555 1.33 LINK C MSE A 865 N SER A 866 1555 1555 1.35 LINK C GLU A 886 N MSE A 887 1555 1555 1.32 LINK C MSE A 887 N ALA A 888 1555 1555 1.33 LINK C LEU B 864 N MSE B 865 1555 1555 1.31 LINK C MSE B 865 N SER B 866 1555 1555 1.33 LINK C GLU B 886 N MSE B 887 1555 1555 1.33 LINK C MSE B 887 N ALA B 888 1555 1555 1.34 LINK C LEU C 864 N MSE C 865 1555 1555 1.34 LINK C MSE C 865 N SER C 866 1555 1555 1.33 LINK C GLU C 886 N MSE C 887 1555 1555 1.40 LINK C MSE C 887 N ALA C 888 1555 1555 1.34 CRYST1 82.025 82.025 56.194 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012191 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017795 0.00000