PDB Short entry for 2OTQ HEADER ANTIMICROBIAL PROTEIN 09-FEB-07 2OTQ TITLE STRUCTURE OF THE ANTIMICROBIAL PEPTIDE CYCLO(RRWFWR) BOUND TO DPC TITLE 2 MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRW3 CATIONIC ANTIMICROBIAL PEPTIDE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS CATIONIC ANTIMICROBIAL PEPTIDE, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.APPELT,A.WESSELOWSKI,J.A.SODERHALL,M.DATHE,P.SCHMIEDER REVDAT 4 16-MAR-22 2OTQ 1 REMARK LINK REVDAT 3 24-FEB-09 2OTQ 1 VERSN REVDAT 2 01-APR-08 2OTQ 1 JRNL REVDAT 1 25-DEC-07 2OTQ 0 JRNL AUTH C.APPELT,A.WESSOLOWSKI,M.DATHE,P.SCHMIEDER JRNL TITL STRUCTURES OF CYCLIC, ANTIMICROBIAL PEPTIDES IN A JRNL TITL 2 MEMBRANE-MIMICKING ENVIRONMENT DEFINE REQUIREMENTS FOR JRNL TITL 3 ACTIVITY. JRNL REF J.PEPT.SCI. V. 14 524 2007 JRNL REFN ISSN 1075-2617 JRNL PMID 17985394 JRNL DOI 10.1002/PSC.924 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, AMBER 6.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), CASE, D.A. (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OTQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041573. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 50MM DPC-D38, H2O:D2O 9:1 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.1, AMBER 6.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 2 -52.37 -25.99 REMARK 500 1 TRP A 3 10.19 -149.12 REMARK 500 2 ARG A 2 -68.01 76.35 REMARK 500 2 TRP A 3 2.85 -164.73 REMARK 500 2 PHE A 4 -162.53 -121.07 REMARK 500 3 ARG A 2 -76.41 56.38 REMARK 500 3 TRP A 3 5.12 -151.55 REMARK 500 3 PHE A 4 -159.56 -119.36 REMARK 500 4 ARG A 2 -64.72 79.75 REMARK 500 4 TRP A 3 6.91 -163.08 REMARK 500 5 ARG A 2 -59.97 75.06 REMARK 500 5 TRP A 3 8.62 -164.61 REMARK 500 6 ARG A 2 -82.67 59.35 REMARK 500 6 TRP A 3 -23.95 -151.52 REMARK 500 7 ARG A 2 -61.84 61.11 REMARK 500 8 ARG A 2 -80.45 59.24 REMARK 500 9 ARG A 2 -146.13 52.12 REMARK 500 10 ARG A 2 -66.57 79.61 REMARK 500 10 TRP A 3 -20.42 -165.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QVK RELATED DB: PDB REMARK 900 RELATED PEPTIDE REMARK 900 RELATED ID: 1QVL RELATED DB: PDB REMARK 900 RELATED PEPTIDE REMARK 900 RELATED ID: 1SKI RELATED DB: PDB REMARK 900 RELATED PEPTIDE REMARK 900 RELATED ID: 1SKK RELATED DB: PDB REMARK 900 RELATED PEPTIDE REMARK 900 RELATED ID: 1SKL RELATED DB: PDB REMARK 900 RELATED PEPTIDE DBREF 2OTQ A 1 6 PDB 2OTQ 2OTQ 1 6 SEQRES 1 A 6 ARG ARG TRP PHE TRP ARG LINK N ARG A 1 C ARG A 6 1555 1555 1.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000