PDB Short entry for 2P03 HEADER CELL ADHESION 28-FEB-07 2P03 TITLE THE STRUCTURE OF RECEPTOR-ASSOCIATED PROTEIN(RAP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-2-MACROGLOBULIN RECEPTOR-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 35-357; COMPND 5 SYNONYM: ALPHA-2- MRAP, LOW DENSITY LIPOPROTEIN RECEPTOR-RELATED COMPND 6 PROTEIN-ASSOCIATED PROTEIN 1, RAP; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LRPAP1 KEYWDS RECEPTOR-ASSOCIATED PROTEIN, RAP, CELL ADHESION EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR D.LEE,J.D.WALSH,M.MIGLIORINI,P.YU,T.CAI,C.D.SCHWIETERS,S.KRUEGER, AUTHOR 2 D.K.STRICKLAND,Y.X.WANG REVDAT 3 16-MAR-22 2P03 1 REMARK REVDAT 2 24-FEB-09 2P03 1 VERSN REVDAT 1 21-AUG-07 2P03 0 JRNL AUTH D.LEE,J.D.WALSH,M.MIGLIORINI,P.YU,T.CAI,C.D.SCHWIETERS, JRNL AUTH 2 S.KRUEGER,D.K.STRICKLAND,Y.X.WANG JRNL TITL THE STRUCTURE OF RECEPTOR-ASSOCIATED PROTEIN (RAP). JRNL REF PROTEIN SCI. V. 16 1628 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17656581 JRNL DOI 10.1110/PS.072865407 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1.4, X-PLOR 3 REMARK 3 AUTHORS : P.GUNTERT ET AL. (CYANA), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2P03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041799. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.25 REMARK 210 IONIC STRENGTH : 75 MM NAPI 50 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; 3D_13C-SEPARATED_NOESY; REMARK 210 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : RG REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : ENERGY MINIMIZED AVERAGE REMARK 210 STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: RG BASED ON SANS EXPERIMENT REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLU A 281 HH21 ARG A 282 1.20 REMARK 500 HE ARG A 76 HD22 ASN A 80 1.20 REMARK 500 O LYS A 129 H SER A 131 1.31 REMARK 500 O ARG A 161 H GLU A 163 1.33 REMARK 500 O LEU A 229 H SER A 232 1.42 REMARK 500 O HIS A 320 H GLU A 322 1.54 REMARK 500 O SER A 232 H ASN A 234 1.56 REMARK 500 O THR A 236 H LEU A 240 1.56 REMARK 500 O GLN A 199 OD2 ASP A 202 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 3 73.89 -155.87 REMARK 500 GLU A 4 29.14 -74.64 REMARK 500 LYS A 5 93.39 -47.04 REMARK 500 ASN A 6 92.06 -64.34 REMARK 500 SER A 11 60.25 -161.58 REMARK 500 PHE A 20 -167.79 -129.22 REMARK 500 HIS A 36 117.02 65.03 REMARK 500 PRO A 38 158.41 -43.21 REMARK 500 ASP A 68 95.14 -67.85 REMARK 500 GLU A 69 -77.18 -96.07 REMARK 500 ASP A 70 -8.63 -44.98 REMARK 500 ASP A 91 -84.90 -75.46 REMARK 500 THR A 100 -18.28 -141.21 REMARK 500 SER A 101 171.95 47.67 REMARK 500 SER A 103 89.74 -166.95 REMARK 500 LEU A 104 116.70 -174.24 REMARK 500 SER A 105 -77.90 -145.26 REMARK 500 THR A 107 169.53 48.39 REMARK 500 GLN A 108 86.70 -175.65 REMARK 500 ASP A 110 -80.84 -60.07 REMARK 500 LEU A 112 65.81 -106.07 REMARK 500 ASP A 113 -77.52 -107.33 REMARK 500 LYS A 129 20.62 -178.58 REMARK 500 PHE A 130 50.05 -59.62 REMARK 500 THR A 162 48.16 -61.26 REMARK 500 GLU A 163 -32.26 -150.88 REMARK 500 HIS A 166 24.85 179.97 REMARK 500 ASN A 168 -85.05 -145.21 REMARK 500 SER A 173 110.65 174.91 REMARK 500 LEU A 175 52.79 -150.69 REMARK 500 SER A 176 108.51 47.47 REMARK 500 ASP A 177 79.60 -47.98 REMARK 500 SER A 181 -48.88 -176.04 REMARK 500 LEU A 183 -21.11 65.12 REMARK 500 GLN A 210 -33.81 -136.14 REMARK 500 THR A 214 -62.76 -161.57 REMARK 500 ALA A 216 110.74 175.38 REMARK 500 GLU A 217 34.35 -160.12 REMARK 500 PHE A 218 -62.02 -122.04 REMARK 500 GLU A 219 -125.58 -69.99 REMARK 500 ARG A 222 -26.30 -140.22 REMARK 500 VAL A 223 -86.97 -64.97 REMARK 500 ALA A 230 -34.28 -32.64 REMARK 500 ALA A 233 52.11 -68.60 REMARK 500 ASN A 234 85.87 31.95 REMARK 500 LEU A 235 -164.20 -116.46 REMARK 500 ASP A 237 -72.05 -33.70 REMARK 500 LYS A 238 -74.73 -42.11 REMARK 500 LEU A 240 -78.49 -63.83 REMARK 500 GLU A 241 -46.26 -26.64 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2P01 RELATED DB: PDB DBREF 2P03 A 1 323 UNP P30533 AMRP_HUMAN 35 357 SEQRES 1 A 323 TYR SER ARG GLU LYS ASN GLN PRO LYS PRO SER PRO LYS SEQRES 2 A 323 ARG GLU SER GLY GLU GLU PHE ARG MET GLU LYS LEU ASN SEQRES 3 A 323 GLN LEU TRP GLU LYS ALA GLN ARG LEU HIS LEU PRO PRO SEQRES 4 A 323 VAL ARG LEU ALA GLU LEU HIS ALA ASP LEU LYS ILE GLN SEQRES 5 A 323 GLU ARG ASP GLU LEU ALA TRP LYS LYS LEU LYS LEU ASP SEQRES 6 A 323 GLY LEU ASP GLU ASP GLY GLU LYS GLU ALA ARG LEU ILE SEQRES 7 A 323 ARG ASN LEU ASN VAL ILE LEU ALA LYS TYR GLY LEU ASP SEQRES 8 A 323 GLY LYS LYS ASP ALA ARG GLN VAL THR SER ASN SER LEU SEQRES 9 A 323 SER GLY THR GLN GLU ASP GLY LEU ASP ASP PRO ARG LEU SEQRES 10 A 323 GLU LYS LEU TRP HIS LYS ALA LYS THR SER GLY LYS PHE SEQRES 11 A 323 SER GLY GLU GLU LEU ASP LYS LEU TRP ARG GLU PHE LEU SEQRES 12 A 323 HIS HIS LYS GLU LYS VAL HIS GLU TYR ASN VAL LEU LEU SEQRES 13 A 323 GLU THR LEU SER ARG THR GLU GLU ILE HIS GLU ASN VAL SEQRES 14 A 323 ILE SER PRO SER ASP LEU SER ASP ILE LYS GLY SER VAL SEQRES 15 A 323 LEU HIS SER ARG HIS THR GLU LEU LYS GLU LYS LEU ARG SEQRES 16 A 323 SER ILE ASN GLN GLY LEU ASP ARG LEU ARG ARG VAL SER SEQRES 17 A 323 HIS GLN GLY TYR SER THR GLU ALA GLU PHE GLU GLU PRO SEQRES 18 A 323 ARG VAL ILE ASP LEU TRP ASP LEU ALA GLN SER ALA ASN SEQRES 19 A 323 LEU THR ASP LYS GLU LEU GLU ALA PHE ARG GLU GLU LEU SEQRES 20 A 323 LYS HIS PHE GLU ALA LYS ILE GLU LYS HIS ASN HIS TYR SEQRES 21 A 323 GLN LYS GLN LEU GLU ILE ALA HIS GLU LYS LEU ARG HIS SEQRES 22 A 323 ALA GLU SER VAL GLY ASP GLY GLU ARG VAL SER ARG SER SEQRES 23 A 323 ARG GLU LYS HIS ALA LEU LEU GLU GLY ARG THR LYS GLU SEQRES 24 A 323 LEU GLY TYR THR VAL LYS LYS HIS LEU GLN ASP LEU SER SEQRES 25 A 323 GLY ARG ILE SER ARG ALA ARG HIS ASN GLU LEU HELIX 1 1 MET A 22 HIS A 36 1 15 HELIX 2 2 PRO A 38 GLY A 66 1 29 HELIX 3 3 GLY A 71 GLY A 89 1 19 HELIX 4 4 ASP A 114 GLY A 128 1 15 HELIX 5 5 GLY A 132 THR A 162 1 31 HELIX 6 6 LEU A 183 GLN A 210 1 28 HELIX 7 7 ARG A 222 GLN A 231 1 10 HELIX 8 8 THR A 236 GLU A 275 1 40 HELIX 9 9 SER A 276 GLY A 278 5 3 HELIX 10 10 ARG A 282 SER A 316 1 35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000