PDB Short entry for 2P0P HEADER METAL BINDING PROTEIN 28-FEB-07 2P0P TITLE CALCIUM BINDING PROTEIN IN THE FREE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALR1010 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CCBP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC SP.; SOURCE 3 ORGANISM_TAXID: 103690; SOURCE 4 STRAIN: PCC 7120; SOURCE 5 GENE: CCBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CALCIUM BINDING, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.ZHANG,Y.HU,C.JIN REVDAT 4 13-JUL-11 2P0P 1 VERSN REVDAT 3 24-FEB-09 2P0P 1 VERSN REVDAT 2 22-APR-08 2P0P 1 MODEL REMARK HELIX REVDAT 1 25-MAR-08 2P0P 0 JRNL AUTH X.ZHANG,Y.HU,B.XIA,C.JIN JRNL TITL SOLUTION STRUCTURES OF CCBP FROM ANABAENA REVEALS A NEW FOLD JRNL TITL 2 AND NOVEL CALCIUM BINDING SITES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7.0 REMARK 3 AUTHORS : D.A.CASE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2P0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-07. REMARK 100 THE RCSB ID CODE IS RCSB041820. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM CCBP U-15N,13C, 20MM TRIS, REMARK 210 220MM NACL,10MM DTT; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; HNCACB,CBCA(CO) REMARK 210 NH; HNCO,HN(CA)CO; HC(C)H-COSY; REMARK 210 HC(C)H-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE 2.1, REMARK 210 NMRVIEW 5, DYANA CYANA2.0 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 7 HG1 THR A 9 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 5 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 14 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 17 ARG A 13 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 9.72 56.95 REMARK 500 1 GLU A 41 49.20 -81.45 REMARK 500 1 LYS A 49 47.87 -83.27 REMARK 500 1 SER A 52 11.73 -66.06 REMARK 500 1 SER A 56 12.96 59.35 REMARK 500 1 ASP A 89 -27.79 60.35 REMARK 500 2 LYS A 49 49.21 -81.03 REMARK 500 2 ARG A 53 171.02 60.06 REMARK 500 2 LYS A 76 -19.61 -140.87 REMARK 500 2 ASP A 89 -25.45 59.83 REMARK 500 2 TYR A 124 -152.63 -85.15 REMARK 500 3 VAL A 4 -3.57 -141.99 REMARK 500 3 GLU A 17 -41.38 -132.65 REMARK 500 3 GLU A 41 20.20 -78.81 REMARK 500 3 LYS A 76 -22.79 -141.00 REMARK 500 3 LYS A 88 -45.51 -140.43 REMARK 500 3 ASP A 89 -26.07 58.47 REMARK 500 4 VAL A 4 104.57 -48.51 REMARK 500 4 ARG A 6 9.51 -68.03 REMARK 500 4 GLU A 17 -47.40 -135.94 REMARK 500 4 LYS A 88 -44.13 -135.98 REMARK 500 4 ASP A 89 -25.25 59.80 REMARK 500 4 LYS A 125 -5.10 -140.10 REMARK 500 5 SER A 3 28.75 -70.49 REMARK 500 5 GLU A 8 -3.98 61.58 REMARK 500 5 LEU A 40 3.66 -66.83 REMARK 500 5 GLU A 41 60.13 19.36 REMARK 500 5 ARG A 53 171.09 61.56 REMARK 500 5 PRO A 70 158.70 -48.26 REMARK 500 5 ASP A 89 -25.47 59.92 REMARK 500 5 LYS A 125 -18.53 -145.49 REMARK 500 6 VAL A 20 -49.92 -15.33 REMARK 500 6 SER A 52 19.36 -68.58 REMARK 500 6 LYS A 54 -34.46 65.25 REMARK 500 6 LYS A 76 -24.01 -146.18 REMARK 500 6 ASP A 89 -25.47 60.70 REMARK 500 7 GLU A 5 -55.26 -140.66 REMARK 500 7 GLU A 17 -37.09 -132.36 REMARK 500 7 SER A 52 18.31 -66.57 REMARK 500 7 PRO A 70 150.60 -48.62 REMARK 500 7 LYS A 76 -31.94 -142.16 REMARK 500 7 LYS A 88 -40.11 -139.26 REMARK 500 7 ASP A 89 -34.38 60.51 REMARK 500 7 LYS A 125 0.28 56.18 REMARK 500 8 LYS A 76 -25.59 -141.78 REMARK 500 8 ASP A 89 -26.07 60.34 REMARK 500 9 GLU A 41 48.86 -80.67 REMARK 500 9 LYS A 49 49.17 -83.56 REMARK 500 9 ARG A 53 102.11 -54.13 REMARK 500 9 LYS A 76 -30.62 -137.63 REMARK 500 REMARK 500 THIS ENTRY HAS 118 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 28 0.09 SIDE CHAIN REMARK 500 4 ARG A 10 0.08 SIDE CHAIN REMARK 500 4 ARG A 28 0.09 SIDE CHAIN REMARK 500 4 TYR A 35 0.07 SIDE CHAIN REMARK 500 5 ARG A 28 0.08 SIDE CHAIN REMARK 500 8 TYR A 35 0.07 SIDE CHAIN REMARK 500 9 ARG A 28 0.08 SIDE CHAIN REMARK 500 12 ARG A 28 0.09 SIDE CHAIN REMARK 500 14 ARG A 28 0.09 SIDE CHAIN REMARK 500 14 TYR A 35 0.07 SIDE CHAIN REMARK 500 19 ARG A 13 0.09 SIDE CHAIN REMARK 500 20 ARG A 53 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2P0Q RELATED DB: PDB DBREF 2P0P A 1 126 UNP Q8YY42 Q8YY42_ANASP 1 126 SEQRES 1 A 126 MET ALA SER VAL GLU ARG ASP GLU THR ARG GLU HIS ARG SEQRES 2 A 126 ILE GLU THR GLU ILE ILE VAL ASP ALA GLU ASP LYS GLU SEQRES 3 A 126 GLU ARG ALA MET GLY TRP TYR TYR TYR LEU ASP ASP THR SEQRES 4 A 126 LEU GLU PHE PRO PHE MET GLY LYS TRP LYS LYS LYS SER SEQRES 5 A 126 ARG LYS THR SER THR ILE GLU GLU LYS THR VAL GLU VAL SEQRES 6 A 126 LEU GLY MET ALA PRO ASP ASP GLU CYS LEU LYS ASP MET SEQRES 7 A 126 TYR VAL GLU VAL ALA ASP ILE GLY GLY LYS ASP ASP ASP SEQRES 8 A 126 VAL TYR THR ALA LYS LEU SER ASP ILE GLU ALA ILE ASP SEQRES 9 A 126 VAL ASP ASP ASP THR GLN GLU ALA ILE ALA ASP TRP LEU SEQRES 10 A 126 TYR TRP LEU ALA ARG GLY TYR LYS PHE HELIX 1 1 GLU A 8 ILE A 18 1 11 HELIX 2 2 ASP A 24 LEU A 40 1 17 HELIX 3 3 ASP A 106 GLY A 123 1 18 SHEET 1 A 5 VAL A 92 LYS A 96 0 SHEET 2 A 5 TYR A 79 ALA A 83 -1 N VAL A 82 O TYR A 93 SHEET 3 A 5 LYS A 61 MET A 68 -1 N GLU A 64 O ALA A 83 SHEET 4 A 5 PHE A 44 TRP A 48 -1 N TRP A 48 O LYS A 61 SHEET 5 A 5 ILE A 100 ILE A 103 -1 O ILE A 103 N MET A 45 CISPEP 1 PHE A 42 PRO A 43 1 -10.00 CISPEP 2 PHE A 42 PRO A 43 2 -10.20 CISPEP 3 PHE A 42 PRO A 43 3 -10.22 CISPEP 4 PHE A 42 PRO A 43 4 -7.31 CISPEP 5 PHE A 42 PRO A 43 5 -10.09 CISPEP 6 PHE A 42 PRO A 43 6 -10.17 CISPEP 7 PHE A 42 PRO A 43 7 -10.03 CISPEP 8 PHE A 42 PRO A 43 8 -10.15 CISPEP 9 PHE A 42 PRO A 43 9 -10.18 CISPEP 10 PHE A 42 PRO A 43 10 -10.00 CISPEP 11 PHE A 42 PRO A 43 11 -9.28 CISPEP 12 PHE A 42 PRO A 43 12 -10.28 CISPEP 13 PHE A 42 PRO A 43 13 -6.48 CISPEP 14 PHE A 42 PRO A 43 14 -8.35 CISPEP 15 PHE A 42 PRO A 43 15 -9.17 CISPEP 16 PHE A 42 PRO A 43 16 -9.99 CISPEP 17 PHE A 42 PRO A 43 17 -10.86 CISPEP 18 PHE A 42 PRO A 43 18 -9.87 CISPEP 19 PHE A 42 PRO A 43 19 -7.03 CISPEP 20 PHE A 42 PRO A 43 20 -8.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000