PDB Short entry for 2P1E HEADER HYDROLASE 05-MAR-07 2P1E TITLE CRYSTAL STRUCTURE OF THE LEISHMANIA INFANTUM GLYOXALASE II WITH D- TITLE 2 LACTATE AT THE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYOXALASE II; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA INFANTUM; SOURCE 3 ORGANISM_TAXID: 5671; SOURCE 4 GENE: GLOII; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 CODON PLUS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BETA SANDWICH, PRODUCT, SPERMIDINE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.TRINCAO,L.BARATA,S.NAJMUDIN,C.BONIFACIO,M.J.ROMAO REVDAT 5 15-NOV-23 2P1E 1 LINK ATOM REVDAT 4 30-AUG-23 2P1E 1 REMARK SEQADV REVDAT 3 13-JUL-11 2P1E 1 VERSN REVDAT 2 24-FEB-09 2P1E 1 VERSN REVDAT 1 15-JAN-08 2P1E 0 JRNL AUTH M.S.SILVA,L.BARATA,A.E.FERREIRA,S.ROMAO,A.M.TOMAS, JRNL AUTH 2 A.P.FREIRE,C.CORDEIRO JRNL TITL CATALYSIS AND STRUCTURAL PROPERTIES OF LEISHMANIA INFANTUM JRNL TITL 2 GLYOXALASE II: TRYPANOTHIONE SPECIFICITY AND PHYLOGENY. JRNL REF BIOCHEMISTRY V. 47 195 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18052346 JRNL DOI 10.1021/BI700989M REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20692 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1060 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1435 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2129 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : 0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.955 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2215 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3013 ; 1.540 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 280 ; 8.724 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;33.251 ;24.141 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 328 ;13.517 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.365 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1708 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1065 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1514 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 115 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.024 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.230 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1426 ; 0.831 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2244 ; 1.220 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 882 ; 2.242 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 768 ; 3.139 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 21.1320 33.6090 61.8660 REMARK 3 T TENSOR REMARK 3 T11: -0.0167 T22: 0.1077 REMARK 3 T33: -0.0825 T12: -0.0161 REMARK 3 T13: -0.0091 T23: -0.1253 REMARK 3 L TENSOR REMARK 3 L11: 4.6791 L22: 2.8438 REMARK 3 L33: 1.5683 L12: 0.7909 REMARK 3 L13: 0.9612 L23: -0.5074 REMARK 3 S TENSOR REMARK 3 S11: -0.1024 S12: -0.8426 S13: 0.4409 REMARK 3 S21: 0.5184 S22: -0.0549 S23: -0.1696 REMARK 3 S31: -0.1258 S32: -0.0342 S33: 0.1573 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3960 36.0150 68.7400 REMARK 3 T TENSOR REMARK 3 T11: 0.1140 T22: 0.3582 REMARK 3 T33: -0.0605 T12: 0.0137 REMARK 3 T13: 0.1038 T23: -0.1608 REMARK 3 L TENSOR REMARK 3 L11: 11.9957 L22: 12.4243 REMARK 3 L33: 6.6020 L12: 4.5252 REMARK 3 L13: 1.3297 L23: 7.6663 REMARK 3 S TENSOR REMARK 3 S11: 0.2832 S12: -1.4664 S13: 0.6841 REMARK 3 S21: 0.2079 S22: -0.0519 S23: 0.0913 REMARK 3 S31: -0.3257 S32: -0.1282 S33: -0.2313 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4430 35.1680 55.2090 REMARK 3 T TENSOR REMARK 3 T11: -0.1209 T22: -0.0126 REMARK 3 T33: -0.0077 T12: 0.0456 REMARK 3 T13: 0.0313 T23: -0.1008 REMARK 3 L TENSOR REMARK 3 L11: 6.2031 L22: 5.2238 REMARK 3 L33: 6.2221 L12: -1.2335 REMARK 3 L13: 0.5227 L23: 1.9698 REMARK 3 S TENSOR REMARK 3 S11: -0.2368 S12: -0.7855 S13: 0.7497 REMARK 3 S21: 0.3590 S22: 0.1358 S23: 0.2446 REMARK 3 S31: -0.1445 S32: -0.3314 S33: 0.1010 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8830 46.1300 58.7120 REMARK 3 T TENSOR REMARK 3 T11: 0.3302 T22: 0.2401 REMARK 3 T33: 0.5632 T12: 0.0193 REMARK 3 T13: 0.0756 T23: -0.3645 REMARK 3 L TENSOR REMARK 3 L11: 4.4959 L22: 2.2338 REMARK 3 L33: 5.5944 L12: -2.8499 REMARK 3 L13: 3.9632 L23: -1.5647 REMARK 3 S TENSOR REMARK 3 S11: -0.3414 S12: -0.9976 S13: 0.7386 REMARK 3 S21: 0.8488 S22: 0.4802 S23: -0.9873 REMARK 3 S31: -1.0829 S32: -0.7658 S33: -0.1388 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 104 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1410 33.5000 47.1330 REMARK 3 T TENSOR REMARK 3 T11: -0.1270 T22: -0.1226 REMARK 3 T33: -0.0785 T12: -0.0116 REMARK 3 T13: 0.0408 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 2.8886 L22: 3.1649 REMARK 3 L33: 1.5457 L12: -0.6187 REMARK 3 L13: 0.1764 L23: -0.3310 REMARK 3 S TENSOR REMARK 3 S11: 0.0990 S12: -0.1318 S13: 0.4962 REMARK 3 S21: 0.0123 S22: -0.0778 S23: -0.1396 REMARK 3 S31: -0.1043 S32: 0.0469 S33: -0.0212 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5190 21.9630 37.9620 REMARK 3 T TENSOR REMARK 3 T11: -0.0453 T22: -0.1012 REMARK 3 T33: -0.1790 T12: 0.0669 REMARK 3 T13: -0.0128 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 14.1893 L22: 7.2380 REMARK 3 L33: 5.4931 L12: 5.8640 REMARK 3 L13: 4.0306 L23: 3.0346 REMARK 3 S TENSOR REMARK 3 S11: 0.0618 S12: 0.5632 S13: -0.2019 REMARK 3 S21: -0.5032 S22: -0.0656 S23: 0.0270 REMARK 3 S31: 0.1946 S32: -0.0166 S33: 0.0038 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 190 A 226 REMARK 3 ORIGIN FOR THE GROUP (A): 28.7000 20.6500 49.3810 REMARK 3 T TENSOR REMARK 3 T11: -0.1039 T22: -0.0869 REMARK 3 T33: -0.1593 T12: 0.0103 REMARK 3 T13: -0.0298 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 3.6815 L22: 2.9507 REMARK 3 L33: 0.7445 L12: 0.5242 REMARK 3 L13: -0.2407 L23: 0.0543 REMARK 3 S TENSOR REMARK 3 S11: 0.0827 S12: -0.1552 S13: -0.1905 REMARK 3 S21: -0.0491 S22: -0.0332 S23: -0.2156 REMARK 3 S31: 0.1583 S32: 0.1109 S33: -0.0494 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 227 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0850 11.4820 57.1340 REMARK 3 T TENSOR REMARK 3 T11: 0.0001 T22: 0.0556 REMARK 3 T33: -0.0794 T12: 0.0208 REMARK 3 T13: -0.0980 T23: 0.1181 REMARK 3 L TENSOR REMARK 3 L11: 10.3691 L22: 6.8529 REMARK 3 L33: 15.8487 L12: -4.7135 REMARK 3 L13: -9.7520 L23: 5.8757 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: -0.6183 S13: -0.6921 REMARK 3 S21: 0.3934 S22: -0.0527 S23: 0.0198 REMARK 3 S31: 0.4036 S32: 0.4574 S33: 0.1254 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 248 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6360 16.3850 46.1560 REMARK 3 T TENSOR REMARK 3 T11: -0.1090 T22: -0.1237 REMARK 3 T33: -0.1249 T12: 0.0159 REMARK 3 T13: -0.0302 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 4.3882 L22: 1.9736 REMARK 3 L33: 4.4297 L12: -0.4753 REMARK 3 L13: 0.1814 L23: 1.2451 REMARK 3 S TENSOR REMARK 3 S11: 0.1473 S12: 0.0774 S13: -0.3586 REMARK 3 S21: 0.0243 S22: 0.0153 S23: -0.0553 REMARK 3 S31: 0.1701 S32: 0.2545 S33: -0.1626 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 285 A 293 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1710 10.0420 40.4750 REMARK 3 T TENSOR REMARK 3 T11: 0.0178 T22: -0.0804 REMARK 3 T33: 0.0388 T12: -0.0054 REMARK 3 T13: -0.0595 T23: -0.0612 REMARK 3 L TENSOR REMARK 3 L11: 18.6317 L22: 6.4358 REMARK 3 L33: 11.9326 L12: 1.6097 REMARK 3 L13: -0.1410 L23: 0.7412 REMARK 3 S TENSOR REMARK 3 S11: 0.1681 S12: 0.4987 S13: -1.2292 REMARK 3 S21: 0.5065 S22: -0.2719 S23: 0.7228 REMARK 3 S31: 0.4537 S32: -0.5138 S33: 0.1038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2P1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041845. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9538 REMARK 200 MONOCHROMATOR : SI (111) CRYSTAL REMARK 200 OPTICS : UNDULATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20715 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 53.642 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.10 REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : 0.48800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2P18 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8K, 0.2M MGCL2, 0.1M AMMONIUM REMARK 280 ACETATE - SOAKED 30 MIN IN 40% PEG 8K, 0.2M MGCL2, 0.1M AMMONIUM REMARK 280 ACETATE, 10MM S-D-LACTOYLTRYPANOTHIONE, PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.99000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.99000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.58600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.56050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.58600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.56050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.99000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.58600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.56050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.99000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.58600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.56050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 LYS A 58 REMARK 465 GLN A 59 REMARK 465 GLN A 60 REMARK 465 GLY A 61 REMARK 465 ASN A 62 REMARK 465 ALA A 63 REMARK 465 ASP A 64 REMARK 465 VAL A 65 REMARK 465 GLU A 93 REMARK 465 ALA A 94 REMARK 465 MET A 95 REMARK 465 ASN A 96 REMARK 465 SER A 97 REMARK 465 THR A 98 REMARK 465 CYS A 294 REMARK 465 ASP A 295 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 HIS A 56 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 LEU A 92 CG CD1 CD2 REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 184 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 LYS A 247 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 21 -134.52 51.02 REMARK 500 ASP A 23 16.93 -141.67 REMARK 500 ASN A 43 -166.34 -109.36 REMARK 500 GLU A 54 -109.19 12.93 REMARK 500 CYS A 138 -72.01 178.22 REMARK 500 HIS A 153 49.70 -144.71 REMARK 500 PHE A 174 58.54 -90.39 REMARK 500 TYR A 198 18.69 59.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 53 GLU A 54 100.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 76 NE2 REMARK 620 2 HIS A 78 ND1 96.6 REMARK 620 3 HIS A 139 NE2 104.1 92.3 REMARK 620 4 LAC A 303 OHN 105.7 91.6 149.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 81 NE2 REMARK 620 2 ASP A 164 OD2 97.8 REMARK 620 3 HIS A 210 NE2 110.0 115.9 REMARK 620 4 LAC A 303 OXT 143.3 92.7 96.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAC A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2P18 RELATED DB: PDB REMARK 900 SAME STRUCTURE AFTER SOAKING WITH SUBSTRATE. DBREF 2P1E A 1 295 UNP Q2PYN0 Q2PYN0_LEIIN 1 295 SEQADV 2P1E HIS A -15 UNP Q2PYN0 EXPRESSION TAG SEQADV 2P1E HIS A -14 UNP Q2PYN0 EXPRESSION TAG SEQADV 2P1E HIS A -13 UNP Q2PYN0 EXPRESSION TAG SEQADV 2P1E HIS A -12 UNP Q2PYN0 EXPRESSION TAG SEQADV 2P1E HIS A -11 UNP Q2PYN0 EXPRESSION TAG SEQADV 2P1E HIS A -10 UNP Q2PYN0 EXPRESSION TAG SEQADV 2P1E SER A -9 UNP Q2PYN0 EXPRESSION TAG SEQADV 2P1E SER A -8 UNP Q2PYN0 EXPRESSION TAG SEQADV 2P1E GLY A -7 UNP Q2PYN0 EXPRESSION TAG SEQADV 2P1E LEU A -6 UNP Q2PYN0 EXPRESSION TAG SEQADV 2P1E VAL A -5 UNP Q2PYN0 EXPRESSION TAG SEQADV 2P1E PRO A -4 UNP Q2PYN0 EXPRESSION TAG SEQADV 2P1E ARG A -3 UNP Q2PYN0 EXPRESSION TAG SEQADV 2P1E GLY A -2 UNP Q2PYN0 EXPRESSION TAG SEQADV 2P1E SER A -1 UNP Q2PYN0 EXPRESSION TAG SEQADV 2P1E HIS A 0 UNP Q2PYN0 EXPRESSION TAG SEQRES 1 A 311 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 311 GLY SER HIS MET ARG ASN TYR CYS THR LYS THR PHE GLY SEQRES 3 A 311 SER ALA PHE SER VAL THR VAL VAL PRO THR LEU LYS ASP SEQRES 4 A 311 ASN PHE SER TYR LEU ILE ASN ASP HIS THR THR HIS THR SEQRES 5 A 311 LEU ALA ALA VAL ASP VAL ASN ALA ASP TYR LYS PRO ILE SEQRES 6 A 311 LEU THR TYR ILE GLU GLU HIS LEU LYS GLN GLN GLY ASN SEQRES 7 A 311 ALA ASP VAL THR TYR THR PHE SER THR ILE LEU SER THR SEQRES 8 A 311 HIS LYS HIS TRP ASP HIS SER GLY GLY ASN ALA LYS LEU SEQRES 9 A 311 LYS ALA GLU LEU GLU ALA MET ASN SER THR VAL PRO VAL SEQRES 10 A 311 VAL VAL VAL GLY GLY ALA ASN ASP SER ILE PRO ALA VAL SEQRES 11 A 311 THR LYS PRO VAL ARG GLU GLY ASP ARG VAL GLN VAL GLY SEQRES 12 A 311 ASP LEU SER VAL GLU VAL ILE ASP ALA PRO CYS HIS THR SEQRES 13 A 311 ARG GLY HIS VAL LEU TYR LYS VAL GLN HIS PRO GLN HIS SEQRES 14 A 311 PRO ASN ASP GLY VAL ALA LEU PHE THR GLY ASP THR MET SEQRES 15 A 311 PHE ILE ALA GLY ILE GLY ALA PHE PHE GLU GLY ASP GLU SEQRES 16 A 311 LYS ASP MET CYS ARG ALA MET GLU LYS VAL TYR HIS ILE SEQRES 17 A 311 HIS LYS GLY ASN ASP TYR ALA LEU ASP LYS VAL THR PHE SEQRES 18 A 311 ILE PHE PRO GLY HIS GLU TYR THR SER GLY PHE MET THR SEQRES 19 A 311 PHE SER GLU LYS THR PHE PRO ASP ARG ALA SER ASP ASP SEQRES 20 A 311 LEU ALA PHE ILE GLN ALA GLN ARG ALA LYS TYR ALA ALA SEQRES 21 A 311 ALA VAL LYS THR GLY ASP PRO SER VAL PRO SER SER LEU SEQRES 22 A 311 ALA GLU GLU LYS ARG GLN ASN LEU PHE LEU ARG VAL ALA SEQRES 23 A 311 ASP PRO ALA PHE VAL ALA LYS MET ASN GLN GLY ASN ALA SEQRES 24 A 311 HIS ALA LEU MET MET TYR LEU TYR ASN ALA CYS ASP HET ZN A 301 1 HET ZN A 302 1 HET SPD A 304 10 HET LAC A 303 6 HETNAM ZN ZINC ION HETNAM SPD SPERMIDINE HETNAM LAC LACTIC ACID HETSYN SPD N-(2-AMINO-PROPYL)-1,4-DIAMINOBUTANE; PA(34) FORMUL 2 ZN 2(ZN 2+) FORMUL 4 SPD C7 H19 N3 FORMUL 5 LAC C3 H6 O3 FORMUL 6 HOH *102(H2 O) HELIX 1 1 TYR A 46 HIS A 56 1 11 HELIX 2 2 HIS A 78 GLY A 83 1 6 HELIX 3 3 GLY A 84 GLU A 91 1 8 HELIX 4 4 ASN A 108 SER A 110 5 3 HELIX 5 5 HIS A 153 GLY A 157 5 5 HELIX 6 6 ASP A 178 HIS A 191 1 14 HELIX 7 7 HIS A 193 ASP A 197 5 5 HELIX 8 8 LEU A 200 LYS A 202 5 3 HELIX 9 9 TYR A 212 PHE A 224 1 13 HELIX 10 10 SER A 229 THR A 248 1 20 HELIX 11 11 LEU A 257 ASN A 264 1 8 HELIX 12 12 PHE A 266 ALA A 270 5 5 HELIX 13 13 ASP A 271 ASN A 279 1 9 HELIX 14 14 ASN A 282 ALA A 293 1 12 SHEET 1 A 7 CYS A 5 PHE A 9 0 SHEET 2 A 7 PHE A 13 THR A 20 -1 O PHE A 13 N PHE A 9 SHEET 3 A 7 ASN A 24 ASP A 31 -1 O SER A 26 N VAL A 18 SHEET 4 A 7 THR A 36 VAL A 40 -1 O ALA A 38 N ILE A 29 SHEET 5 A 7 THR A 68 SER A 74 1 O THR A 68 N LEU A 37 SHEET 6 A 7 VAL A 102 GLY A 106 1 O VAL A 104 N ILE A 72 SHEET 7 A 7 LYS A 116 VAL A 118 1 N LYS A 116 O VAL A 103 SHEET 1 B 6 ARG A 123 VAL A 126 0 SHEET 2 B 6 LEU A 129 ASP A 135 -1 O VAL A 131 N VAL A 124 SHEET 3 B 6 VAL A 144 GLN A 149 -1 O GLN A 149 N SER A 130 SHEET 4 B 6 VAL A 158 GLY A 163 -1 O ALA A 159 N VAL A 148 SHEET 5 B 6 THR A 204 PRO A 208 1 O PHE A 205 N LEU A 160 SHEET 6 B 6 SER A 255 SER A 256 -1 O SER A 255 N ILE A 206 SHEET 1 C 2 MET A 166 PHE A 167 0 SHEET 2 C 2 GLY A 170 ILE A 171 -1 O GLY A 170 N PHE A 167 LINK NE2 HIS A 76 ZN ZN A 302 1555 1555 2.21 LINK ND1 HIS A 78 ZN ZN A 302 1555 1555 2.14 LINK NE2 HIS A 81 ZN ZN A 301 1555 1555 2.03 LINK NE2 HIS A 139 ZN ZN A 302 1555 1555 2.07 LINK OD2 ASP A 164 ZN ZN A 301 1555 1555 2.09 LINK NE2 HIS A 210 ZN ZN A 301 1555 1555 2.04 LINK ZN ZN A 301 OXT LAC A 303 1555 1555 2.14 LINK ZN ZN A 302 OHN LAC A 303 1555 1555 2.29 CISPEP 1 GLU A 91 LEU A 92 0 -16.53 CISPEP 2 VAL A 99 PRO A 100 0 7.10 CISPEP 3 VAL A 253 PRO A 254 0 0.35 SITE 1 AC1 6 ASP A 80 HIS A 81 ASP A 164 HIS A 210 SITE 2 AC1 6 ZN A 302 LAC A 303 SITE 1 AC2 6 HIS A 76 HIS A 78 HIS A 139 ASP A 164 SITE 2 AC2 6 ZN A 301 LAC A 303 SITE 1 AC3 7 ILE A 171 TYR A 212 PHE A 216 PHE A 266 SITE 2 AC3 7 LEU A 290 TYR A 291 ALA A 293 SITE 1 AC4 10 HIS A 76 HIS A 78 ASP A 80 HIS A 81 SITE 2 AC4 10 HIS A 139 ASP A 164 PHE A 175 HIS A 210 SITE 3 AC4 10 ZN A 301 ZN A 302 CRYST1 67.172 89.121 85.980 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014887 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011631 0.00000