PDB Short entry for 2P1P HEADER SIGNALING PROTEIN 06-MAR-07 2P1P TITLE MECHANISM OF AUXIN PERCEPTION BY THE TIR1 UBIQUITIN LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SKP1-LIKE PROTEIN 1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SKP1-LIKE 1, UFO-BINDING PROTEIN 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRANSPORT INHIBITOR RESPONSE 1 PROTEIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: F-BOX/LRR-REPEAT PROTEIN 1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: SKP1A, ASK1, SKP1, UIP1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 12 ORGANISM_COMMON: THALE CRESS; SOURCE 13 ORGANISM_TAXID: 3702; SOURCE 14 GENE: TIR1, FBL1, WEI1; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS F-BOX, LEUCINE RICH REPEAT, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.TAN,L.I.A.CALDERON-VILLALOBOS,M.SHARON,C.V.ROBINSON,M.ESTELLE, AUTHOR 2 N.ZHENG REVDAT 4 30-AUG-23 2P1P 1 REMARK REVDAT 3 14-OCT-20 2P1P 1 REMARK HETSYN REVDAT 2 24-FEB-09 2P1P 1 VERSN REVDAT 1 10-APR-07 2P1P 0 JRNL AUTH X.TAN,L.I.A.CALDERON-VILLALOBOS,M.SHARON,C.ZHENG, JRNL AUTH 2 C.V.ROBINSON,M.ESTELLE,N.ZHENG JRNL TITL MECHANISM OF AUXIN PERCEPTION BY THE TIR1 UBIQUITIN LIGASE JRNL REF NATURE V. 446 640 2007 JRNL REFN ISSN 0028-0836 JRNL PMID 17410169 JRNL DOI 10.1038/NATURE05731 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 41497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2208 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2364 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.1430 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5225 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 439 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.13000 REMARK 3 B22 (A**2) : 0.94000 REMARK 3 B33 (A**2) : -1.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.504 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5383 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7307 ; 1.829 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 658 ; 6.327 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 230 ;35.932 ;23.696 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 941 ;17.518 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;17.817 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 836 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3991 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2544 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3649 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 432 ; 0.190 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.321 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3392 ; 1.257 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5358 ; 1.954 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2250 ; 3.781 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1949 ; 5.536 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2P1P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000041856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41497 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2P1M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BTP, 10% 14% PEG 20,000, 200 MM REMARK 280 NACL, 5 MM DTT, PH 6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.04250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.20300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.04250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.20300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 32.66380 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -120.55532 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 820 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 ILE A 6 REMARK 465 VAL A 7 REMARK 465 HIS A 31 REMARK 465 MET A 32 REMARK 465 VAL A 33 REMARK 465 GLU A 34 REMARK 465 ASP A 35 REMARK 465 ASP A 36 REMARK 465 CYS A 37 REMARK 465 VAL A 38 REMARK 465 ASP A 39 REMARK 465 ASN A 40 REMARK 465 GLY A 41 REMARK 465 THR A 48 REMARK 465 SER A 49 REMARK 465 LYS A 50 REMARK 465 ILE A 51 REMARK 465 LEU A 52 REMARK 465 ALA A 53 REMARK 465 LYS A 54 REMARK 465 VAL A 55 REMARK 465 ILE A 56 REMARK 465 GLU A 57 REMARK 465 TYR A 58 REMARK 465 CYS A 59 REMARK 465 LYS A 60 REMARK 465 ARG A 61 REMARK 465 HIS A 62 REMARK 465 VAL A 63 REMARK 465 GLU A 64 REMARK 465 ALA A 65 REMARK 465 ALA A 66 REMARK 465 ALA A 67 REMARK 465 SER A 68 REMARK 465 LYS A 69 REMARK 465 ALA A 70 REMARK 465 GLU A 71 REMARK 465 ALA A 72 REMARK 465 VAL A 73 REMARK 465 GLU A 74 REMARK 465 GLY A 75 REMARK 465 ALA A 76 REMARK 465 ALA A 77 REMARK 465 THR A 78 REMARK 465 SER A 79 REMARK 465 ASP A 80 REMARK 465 ASP A 81 REMARK 465 ASP A 82 REMARK 465 LEU A 83 REMARK 465 LYS A 84 REMARK 465 ALA A 85 REMARK 465 TRP A 86 REMARK 465 ASP A 87 REMARK 465 ALA A 88 REMARK 465 ASP A 89 REMARK 465 PHE A 90 REMARK 465 MET A 91 REMARK 465 LYS A 92 REMARK 465 ILE A 93 REMARK 465 ASP A 94 REMARK 465 GLN A 95 REMARK 465 ALA A 96 REMARK 465 THR A 97 REMARK 465 LEU A 98 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 LYS B 3 REMARK 465 ARG B 4 REMARK 465 ILE B 5 REMARK 465 ALA B 6 REMARK 465 LEU B 7 REMARK 465 ASP B 579 REMARK 465 SER B 580 REMARK 465 THR B 581 REMARK 465 MET B 582 REMARK 465 ARG B 583 REMARK 465 PHE B 584 REMARK 465 SER B 585 REMARK 465 ARG B 586 REMARK 465 GLN B 587 REMARK 465 ILE B 588 REMARK 465 ILE B 589 REMARK 465 THR B 590 REMARK 465 THR B 591 REMARK 465 ASN B 592 REMARK 465 GLY B 593 REMARK 465 LEU B 594 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB CYS B 551 O HOH B 858 1.94 REMARK 500 O HOH A 172 O HOH A 185 1.97 REMARK 500 SD MET B 460 O HOH B 957 2.11 REMARK 500 NZ LYS B 76 OE2 GLU B 141 2.16 REMARK 500 O HOH B 759 O HOH B 997 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 297 CB SER B 297 OG -0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 399 CG - SD - CE ANGL. DEV. = -15.6 DEGREES REMARK 500 ASP B 490 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 555 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 44 79.14 -116.25 REMARK 500 TYR B 104 56.18 -103.14 REMARK 500 ARG B 164 122.19 -34.60 REMARK 500 THR B 300 41.09 -96.93 REMARK 500 GLU B 326 173.67 60.11 REMARK 500 CYS B 337 67.40 -104.63 REMARK 500 ARG B 396 63.56 -115.41 REMARK 500 CYS B 516 -155.13 -102.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP B 595 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IAC B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2P1M RELATED DB: PDB REMARK 900 RELATED ID: 2P1N RELATED DB: PDB REMARK 900 RELATED ID: 2P1O RELATED DB: PDB REMARK 900 RELATED ID: 2P1Q RELATED DB: PDB DBREF 2P1P A 1 160 UNP Q39255 SKP1A_ARATH 1 160 DBREF 2P1P B 1 594 UNP Q570C0 TIR1_ARATH 1 594 SEQRES 1 A 160 MET SER ALA LYS LYS ILE VAL LEU LYS SER SER ASP GLY SEQRES 2 A 160 GLU SER PHE GLU VAL GLU GLU ALA VAL ALA LEU GLU SER SEQRES 3 A 160 GLN THR ILE ALA HIS MET VAL GLU ASP ASP CYS VAL ASP SEQRES 4 A 160 ASN GLY VAL PRO LEU PRO ASN VAL THR SER LYS ILE LEU SEQRES 5 A 160 ALA LYS VAL ILE GLU TYR CYS LYS ARG HIS VAL GLU ALA SEQRES 6 A 160 ALA ALA SER LYS ALA GLU ALA VAL GLU GLY ALA ALA THR SEQRES 7 A 160 SER ASP ASP ASP LEU LYS ALA TRP ASP ALA ASP PHE MET SEQRES 8 A 160 LYS ILE ASP GLN ALA THR LEU PHE GLU LEU ILE LEU ALA SEQRES 9 A 160 ALA ASN TYR LEU ASN ILE LYS ASN LEU LEU ASP LEU THR SEQRES 10 A 160 CYS GLN THR VAL ALA ASP MET ILE LYS GLY LYS THR PRO SEQRES 11 A 160 GLU GLU ILE ARG THR THR PHE ASN ILE LYS ASN ASP PHE SEQRES 12 A 160 THR PRO GLU GLU GLU GLU GLU VAL ARG ARG GLU ASN GLN SEQRES 13 A 160 TRP ALA PHE GLU SEQRES 1 B 594 MET GLN LYS ARG ILE ALA LEU SER PHE PRO GLU GLU VAL SEQRES 2 B 594 LEU GLU HIS VAL PHE SER PHE ILE GLN LEU ASP LYS ASP SEQRES 3 B 594 ARG ASN SER VAL SER LEU VAL CYS LYS SER TRP TYR GLU SEQRES 4 B 594 ILE GLU ARG TRP CYS ARG ARG LYS VAL PHE ILE GLY ASN SEQRES 5 B 594 CYS TYR ALA VAL SER PRO ALA THR VAL ILE ARG ARG PHE SEQRES 6 B 594 PRO LYS VAL ARG SER VAL GLU LEU LYS GLY LYS PRO HIS SEQRES 7 B 594 PHE ALA ASP PHE ASN LEU VAL PRO ASP GLY TRP GLY GLY SEQRES 8 B 594 TYR VAL TYR PRO TRP ILE GLU ALA MET SER SER SER TYR SEQRES 9 B 594 THR TRP LEU GLU GLU ILE ARG LEU LYS ARG MET VAL VAL SEQRES 10 B 594 THR ASP ASP CYS LEU GLU LEU ILE ALA LYS SER PHE LYS SEQRES 11 B 594 ASN PHE LYS VAL LEU VAL LEU SER SER CYS GLU GLY PHE SEQRES 12 B 594 SER THR ASP GLY LEU ALA ALA ILE ALA ALA THR CYS ARG SEQRES 13 B 594 ASN LEU LYS GLU LEU ASP LEU ARG GLU SER ASP VAL ASP SEQRES 14 B 594 ASP VAL SER GLY HIS TRP LEU SER HIS PHE PRO ASP THR SEQRES 15 B 594 TYR THR SER LEU VAL SER LEU ASN ILE SER CYS LEU ALA SEQRES 16 B 594 SER GLU VAL SER PHE SER ALA LEU GLU ARG LEU VAL THR SEQRES 17 B 594 ARG CYS PRO ASN LEU LYS SER LEU LYS LEU ASN ARG ALA SEQRES 18 B 594 VAL PRO LEU GLU LYS LEU ALA THR LEU LEU GLN ARG ALA SEQRES 19 B 594 PRO GLN LEU GLU GLU LEU GLY THR GLY GLY TYR THR ALA SEQRES 20 B 594 GLU VAL ARG PRO ASP VAL TYR SER GLY LEU SER VAL ALA SEQRES 21 B 594 LEU SER GLY CYS LYS GLU LEU ARG CYS LEU SER GLY PHE SEQRES 22 B 594 TRP ASP ALA VAL PRO ALA TYR LEU PRO ALA VAL TYR SER SEQRES 23 B 594 VAL CYS SER ARG LEU THR THR LEU ASN LEU SER TYR ALA SEQRES 24 B 594 THR VAL GLN SER TYR ASP LEU VAL LYS LEU LEU CYS GLN SEQRES 25 B 594 CYS PRO LYS LEU GLN ARG LEU TRP VAL LEU ASP TYR ILE SEQRES 26 B 594 GLU ASP ALA GLY LEU GLU VAL LEU ALA SER THR CYS LYS SEQRES 27 B 594 ASP LEU ARG GLU LEU ARG VAL PHE PRO SER GLU PRO PHE SEQRES 28 B 594 VAL MET GLU PRO ASN VAL ALA LEU THR GLU GLN GLY LEU SEQRES 29 B 594 VAL SER VAL SER MET GLY CYS PRO LYS LEU GLU SER VAL SEQRES 30 B 594 LEU TYR PHE CYS ARG GLN MET THR ASN ALA ALA LEU ILE SEQRES 31 B 594 THR ILE ALA ARG ASN ARG PRO ASN MET THR ARG PHE ARG SEQRES 32 B 594 LEU CYS ILE ILE GLU PRO LYS ALA PRO ASP TYR LEU THR SEQRES 33 B 594 LEU GLU PRO LEU ASP ILE GLY PHE GLY ALA ILE VAL GLU SEQRES 34 B 594 HIS CYS LYS ASP LEU ARG ARG LEU SER LEU SER GLY LEU SEQRES 35 B 594 LEU THR ASP LYS VAL PHE GLU TYR ILE GLY THR TYR ALA SEQRES 36 B 594 LYS LYS MET GLU MET LEU SER VAL ALA PHE ALA GLY ASP SEQRES 37 B 594 SER ASP LEU GLY MET HIS HIS VAL LEU SER GLY CYS ASP SEQRES 38 B 594 SER LEU ARG LYS LEU GLU ILE ARG ASP CYS PRO PHE GLY SEQRES 39 B 594 ASP LYS ALA LEU LEU ALA ASN ALA SER LYS LEU GLU THR SEQRES 40 B 594 MET ARG SER LEU TRP MET SER SER CYS SER VAL SER PHE SEQRES 41 B 594 GLY ALA CYS LYS LEU LEU GLY GLN LYS MET PRO LYS LEU SEQRES 42 B 594 ASN VAL GLU VAL ILE ASP GLU ARG GLY ALA PRO ASP SER SEQRES 43 B 594 ARG PRO GLU SER CYS PRO VAL GLU ARG VAL PHE ILE TYR SEQRES 44 B 594 ARG THR VAL ALA GLY PRO ARG PHE ASP MET PRO GLY PHE SEQRES 45 B 594 VAL TRP ASN MET ASP GLN ASP SER THR MET ARG PHE SER SEQRES 46 B 594 ARG GLN ILE ILE THR THR ASN GLY LEU HET IHP B 595 36 HET IAC B 601 13 HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETNAM IAC 1H-INDOL-3-YLACETIC ACID HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE HETSYN IAC INDOLE ACETIC ACID FORMUL 3 IHP C6 H18 O24 P6 FORMUL 4 IAC C10 H9 N O2 FORMUL 5 HOH *439(H2 O) HELIX 1 1 GLU A 19 LEU A 24 1 6 HELIX 2 2 PHE A 99 ASN A 109 1 11 HELIX 3 3 ILE A 110 LYS A 126 1 17 HELIX 4 4 THR A 129 PHE A 137 1 9 HELIX 5 5 THR A 144 PHE A 159 1 16 HELIX 6 6 PRO B 10 SER B 19 1 10 HELIX 7 7 LEU B 23 LEU B 32 1 10 HELIX 8 8 CYS B 34 ARG B 45 1 12 HELIX 9 9 SER B 57 PHE B 65 1 9 HELIX 10 10 PRO B 77 ASN B 83 5 7 HELIX 11 11 VAL B 93 TYR B 104 1 12 HELIX 12 12 THR B 118 PHE B 129 1 12 HELIX 13 13 THR B 145 CYS B 155 1 11 HELIX 14 14 SER B 172 PHE B 179 5 8 HELIX 15 15 SER B 199 CYS B 210 1 12 HELIX 16 16 PRO B 223 ALA B 234 1 12 HELIX 17 17 ARG B 250 GLY B 263 1 14 HELIX 18 18 VAL B 277 ALA B 283 5 7 HELIX 19 19 VAL B 284 SER B 289 1 6 HELIX 20 20 GLN B 302 CYS B 311 1 10 HELIX 21 21 ILE B 325 CYS B 337 1 13 HELIX 22 22 THR B 360 CYS B 371 1 12 HELIX 23 23 THR B 385 ARG B 396 1 12 HELIX 24 24 LEU B 420 CYS B 431 1 12 HELIX 25 25 THR B 444 ALA B 455 1 12 HELIX 26 26 SER B 469 CYS B 480 1 12 HELIX 27 27 GLY B 494 ASN B 501 1 8 HELIX 28 28 ALA B 502 MET B 508 5 7 HELIX 29 29 SER B 519 MET B 530 1 12 HELIX 30 30 ALA B 543 ARG B 547 5 5 SHEET 1 A21 LYS B 47 ILE B 50 0 SHEET 2 A21 SER B 70 LYS B 74 1 O GLU B 72 N ILE B 50 SHEET 3 A21 GLU B 109 LYS B 113 1 O ARG B 111 N LEU B 73 SHEET 4 A21 VAL B 134 SER B 138 1 O VAL B 136 N LEU B 112 SHEET 5 A21 GLU B 160 ASP B 162 1 O ASP B 162 N LEU B 137 SHEET 6 A21 SER B 188 ASN B 190 1 O ASN B 190 N LEU B 161 SHEET 7 A21 SER B 215 LYS B 217 1 O LYS B 217 N LEU B 189 SHEET 8 A21 GLU B 239 GLY B 241 1 O GLY B 241 N LEU B 216 SHEET 9 A21 CYS B 269 SER B 271 1 O CYS B 269 N LEU B 240 SHEET 10 A21 THR B 293 LEU B 296 1 O ASN B 295 N LEU B 270 SHEET 11 A21 ARG B 318 LEU B 322 1 O TRP B 320 N LEU B 296 SHEET 12 A21 GLU B 342 PHE B 346 1 O ARG B 344 N VAL B 321 SHEET 13 A21 SER B 376 CYS B 381 1 O LEU B 378 N VAL B 345 SHEET 14 A21 ARG B 401 ILE B 406 1 O ARG B 401 N VAL B 377 SHEET 15 A21 ARG B 436 SER B 438 1 O ARG B 436 N PHE B 402 SHEET 16 A21 MET B 460 ALA B 464 1 O MET B 460 N LEU B 437 SHEET 17 A21 LYS B 485 ARG B 489 1 O GLU B 487 N LEU B 461 SHEET 18 A21 SER B 510 SER B 514 1 O TRP B 512 N LEU B 486 SHEET 19 A21 ARG B 555 ARG B 560 -1 O ILE B 558 N LEU B 511 SHEET 20 A21 LEU B 533 ILE B 538 -1 N ASN B 534 O TYR B 559 SHEET 21 A21 VAL B 573 ASN B 575 -1 O TRP B 574 N VAL B 537 SHEET 1 B 2 GLU B 141 SER B 144 0 SHEET 2 B 2 ASP B 167 ASP B 169 1 O ASP B 169 N PHE B 143 SITE 1 AC1 17 PHE B 49 LYS B 74 HIS B 78 LYS B 113 SITE 2 AC1 17 ARG B 114 ARG B 344 ARG B 401 ARG B 403 SITE 3 AC1 17 ARG B 436 MET B 460 ARG B 484 LYS B 485 SITE 4 AC1 17 ARG B 509 HOH B 641 HOH B 746 HOH B 852 SITE 5 AC1 17 HOH B 908 SITE 1 AC2 9 PHE B 79 ARG B 403 LEU B 404 SER B 438 SITE 2 AC2 9 LEU B 439 ALA B 464 ARG B 489 HOH B 616 SITE 3 AC2 9 HOH B 913 CRYST1 102.085 80.406 124.902 90.00 105.16 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009796 0.000000 0.002654 0.00000 SCALE2 0.000000 0.012437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008295 0.00000