PDB Short entry for 2P6R HEADER DNA BINDING PROTEIN/DNA 19-MAR-07 2P6R TITLE CRYSTAL STRUCTURE OF SUPERFAMILY 2 HELICASE HEL308 IN COMPLEX WITH TITLE 2 UNWOUND DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 25-MER; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*CP*TP*AP*GP*AP*GP*AP*CP*TP*AP*TP*CP*GP*AP*T)-3'; COMPND 7 CHAIN: Y; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: AFUHEL308 HELICASE; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 7 ORGANISM_TAXID: 2234; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET-29 KEYWDS PROTEIN-DNA COMPLEX, SF2 HELICASE, ARCHAEAL HELICASE, DNA REPAIR, DNA KEYWDS 2 BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.BUETTNER,S.NEHRING,K.P.HOPFNER REVDAT 6 21-FEB-24 2P6R 1 REMARK REVDAT 5 24-FEB-09 2P6R 1 VERSN REVDAT 4 04-SEP-07 2P6R 3 SEQRES ATOM REVDAT 3 17-JUL-07 2P6R 1 JRNL REVDAT 2 10-JUL-07 2P6R 1 TITLE REVDAT 1 12-JUN-07 2P6R 0 JRNL AUTH K.BUTTNER,S.NEHRING,K.P.HOPFNER JRNL TITL STRUCTURAL BASIS FOR DNA DUPLEX SEPARATION BY A JRNL TITL 2 SUPERFAMILY-2 HELICASE. JRNL REF NAT.STRUCT.MOL.BIOL. V. 14 647 2007 JRNL REFN ISSN 1545-9993 JRNL PMID 17558417 JRNL DOI 10.1038/NSMB1246 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 611.00 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 54172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2883 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5406 REMARK 3 NUCLEIC ACID ATOMS : 813 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.49000 REMARK 3 B22 (A**2) : -3.49000 REMARK 3 B33 (A**2) : 6.98000 REMARK 3 B12 (A**2) : -12.24200 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.425 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.463 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.948 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.090 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 25.61 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR:DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2P6R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000042036. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54172 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : 0.09000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.16800 REMARK 200 R SYM FOR SHELL (I) : 0.19400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0; 22% MPD; 0.1M REMARK 280 MGACETATE; 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.32433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 168.64867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 126.48650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 210.81083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.16217 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.32433 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 168.64867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 210.81083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 126.48650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.16217 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, Y, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 22 REMARK 465 ILE A 23 REMARK 465 GLU A 24 REMARK 465 LEU A 687 REMARK 465 ASN A 688 REMARK 465 PRO A 689 REMARK 465 GLU A 690 REMARK 465 SER A 691 REMARK 465 ALA A 692 REMARK 465 ALA A 693 REMARK 465 ALA A 694 REMARK 465 LEU A 695 REMARK 465 GLU A 696 REMARK 465 HIS A 697 REMARK 465 HIS A 698 REMARK 465 HIS A 699 REMARK 465 HIS A 700 REMARK 465 HIS A 701 REMARK 465 HIS A 702 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLU A 25 REMARK 475 LEU A 26 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 2 CD CE NZ REMARK 480 VAL A 3 CG1 CG2 REMARK 480 LEU A 18 CG CD1 CD2 REMARK 480 ARG A 97 CZ NH1 NH2 REMARK 480 LYS A 171 CG CD CE NZ REMARK 480 ASP A 195 OD1 OD2 REMARK 480 LYS A 230 CD CE NZ REMARK 480 GLU A 293 OE1 OE2 REMARK 480 MET A 375 CE REMARK 480 GLU A 377 CG CD OE1 OE2 REMARK 480 LYS A 387 CG CD CE NZ REMARK 480 LYS A 429 CD CE NZ REMARK 480 ARG A 460 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DT X 24 N HIS A 639 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA Y 24 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 3 -28.29 -163.42 REMARK 500 LEU A 26 -149.62 75.05 REMARK 500 PRO A 28 78.61 -103.79 REMARK 500 PRO A 29 174.06 -54.71 REMARK 500 GLN A 30 107.53 57.73 REMARK 500 PHE A 38 49.16 -93.93 REMARK 500 ALA A 51 -96.04 -32.47 REMARK 500 TRP A 91 4.75 -66.66 REMARK 500 ILE A 94 3.41 -52.31 REMARK 500 HIS A 111 15.94 -62.07 REMARK 500 LEU A 112 -66.86 52.76 REMARK 500 ASN A 131 40.64 -92.95 REMARK 500 ARG A 132 49.45 27.60 REMARK 500 LEU A 149 5.62 -67.60 REMARK 500 MET A 169 -86.53 -81.30 REMARK 500 ALA A 182 134.06 -177.72 REMARK 500 LYS A 268 31.53 -79.67 REMARK 500 TYR A 269 -38.01 -140.44 REMARK 500 GLU A 273 -29.82 62.49 REMARK 500 GLU A 284 -153.40 -126.74 REMARK 500 GLU A 286 -80.71 -5.33 REMARK 500 ALA A 300 127.37 177.70 REMARK 500 ALA A 304 1.02 -66.46 REMARK 500 THR A 329 -167.11 -107.40 REMARK 500 PRO A 330 -2.34 -57.01 REMARK 500 THR A 331 -73.58 -58.43 REMARK 500 ALA A 340 141.05 -170.68 REMARK 500 ARG A 350 144.44 -174.73 REMARK 500 ASP A 352 74.14 -155.40 REMARK 500 MET A 375 -35.88 -144.56 REMARK 500 ARG A 378 148.31 -172.05 REMARK 500 LYS A 387 -58.11 -24.88 REMARK 500 TYR A 397 -66.44 -104.90 REMARK 500 LYS A 429 6.51 -164.23 REMARK 500 LYS A 445 4.97 -59.92 REMARK 500 GLU A 448 17.64 45.95 REMARK 500 TRP A 465 0.61 -61.26 REMARK 500 ALA A 472 -20.33 -146.33 REMARK 500 SER A 506 -151.50 -85.31 REMARK 500 ASP A 507 -73.60 -67.80 REMARK 500 ASP A 529 42.51 -76.56 REMARK 500 ARG A 540 -38.07 -39.37 REMARK 500 THR A 614 20.29 -143.54 REMARK 500 HIS A 639 -5.86 72.14 REMARK 500 ASN A 655 168.39 175.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA Y 24 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 1-691 MATCH THE GENBANK ACCESSION NP_071282. REMARK 999 NO SUITABLE UNIPROT SEQUENCE DATABASE REFERENCE WAS REMARK 999 AVAILABLE AT THE TIME OF PROCESSING THIS ENTRY DBREF 2P6R X 1 25 PDB 2P6R 2P6R 1 25 DBREF 2P6R Y 11 25 PDB 2P6R 2P6R 11 25 DBREF 2P6R A 1 702 PDB 2P6R 2P6R 1 702 SEQRES 1 X 25 DA DT DC DG DA DT DA DG DT DC DT DC DT SEQRES 2 X 25 DA DG DA DC DA DG DC DA DT DG DT DC SEQRES 1 Y 15 DC DT DA DG DA DG DA DC DT DA DT DC DG SEQRES 2 Y 15 DA DT SEQRES 1 A 702 MET LYS VAL GLU GLU LEU ALA GLU SER ILE SER SER TYR SEQRES 2 A 702 ALA VAL GLY ILE LEU LYS GLU GLU GLY ILE GLU GLU LEU SEQRES 3 A 702 PHE PRO PRO GLN ALA GLU ALA VAL GLU LYS VAL PHE SER SEQRES 4 A 702 GLY LYS ASN LEU LEU LEU ALA MET PRO THR ALA ALA GLY SEQRES 5 A 702 LYS THR LEU LEU ALA GLU MET ALA MET VAL ARG GLU ALA SEQRES 6 A 702 ILE LYS GLY GLY LYS SER LEU TYR VAL VAL PRO LEU ARG SEQRES 7 A 702 ALA LEU ALA GLY GLU LYS TYR GLU SER PHE LYS LYS TRP SEQRES 8 A 702 GLU LYS ILE GLY LEU ARG ILE GLY ILE SER THR GLY ASP SEQRES 9 A 702 TYR GLU SER ARG ASP GLU HIS LEU GLY ASP CYS ASP ILE SEQRES 10 A 702 ILE VAL THR THR SER GLU LYS ALA ASP SER LEU ILE ARG SEQRES 11 A 702 ASN ARG ALA SER TRP ILE LYS ALA VAL SER CYS LEU VAL SEQRES 12 A 702 VAL ASP GLU ILE HIS LEU LEU ASP SER GLU LYS ARG GLY SEQRES 13 A 702 ALA THR LEU GLU ILE LEU VAL THR LYS MET ARG ARG MET SEQRES 14 A 702 ASN LYS ALA LEU ARG VAL ILE GLY LEU SER ALA THR ALA SEQRES 15 A 702 PRO ASN VAL THR GLU ILE ALA GLU TRP LEU ASP ALA ASP SEQRES 16 A 702 TYR TYR VAL SER ASP TRP ARG PRO VAL PRO LEU VAL GLU SEQRES 17 A 702 GLY VAL LEU CYS GLU GLY THR LEU GLU LEU PHE ASP GLY SEQRES 18 A 702 ALA PHE SER THR SER ARG ARG VAL LYS PHE GLU GLU LEU SEQRES 19 A 702 VAL GLU GLU CYS VAL ALA GLU ASN GLY GLY VAL LEU VAL SEQRES 20 A 702 PHE GLU SER THR ARG ARG GLY ALA GLU LYS THR ALA VAL SEQRES 21 A 702 LYS LEU SER ALA ILE THR ALA LYS TYR VAL GLU ASN GLU SEQRES 22 A 702 GLY LEU GLU LYS ALA ILE LEU GLU GLU ASN GLU GLY GLU SEQRES 23 A 702 MET SER ARG LYS LEU ALA GLU CYS VAL ARG LYS GLY ALA SEQRES 24 A 702 ALA PHE HIS HIS ALA GLY LEU LEU ASN GLY GLN ARG ARG SEQRES 25 A 702 VAL VAL GLU ASP ALA PHE ARG ARG GLY ASN ILE LYS VAL SEQRES 26 A 702 VAL VAL ALA THR PRO THR LEU ALA ALA GLY VAL ASN LEU SEQRES 27 A 702 PRO ALA ARG ARG VAL ILE VAL ARG SER LEU TYR ARG PHE SEQRES 28 A 702 ASP GLY TYR SER LYS ARG ILE LYS VAL SER GLU TYR LYS SEQRES 29 A 702 GLN MET ALA GLY ARG ALA GLY ARG PRO GLY MET ASP GLU SEQRES 30 A 702 ARG GLY GLU ALA ILE ILE ILE VAL GLY LYS ARG ASP ARG SEQRES 31 A 702 GLU ILE ALA VAL LYS ARG TYR ILE PHE GLY GLU PRO GLU SEQRES 32 A 702 ARG ILE THR SER LYS LEU GLY VAL GLU THR HIS LEU ARG SEQRES 33 A 702 PHE HIS SER LEU SER ILE ILE CYS ASP GLY TYR ALA LYS SEQRES 34 A 702 THR LEU GLU GLU LEU GLU ASP PHE PHE ALA ASP THR PHE SEQRES 35 A 702 PHE PHE LYS GLN ASN GLU ILE SER LEU SER TYR GLU LEU SEQRES 36 A 702 GLU ARG VAL VAL ARG GLN LEU GLU ASN TRP GLY MET VAL SEQRES 37 A 702 VAL GLU ALA ALA HIS LEU ALA PRO THR LYS LEU GLY SER SEQRES 38 A 702 LEU VAL SER ARG LEU TYR ILE ASP PRO LEU THR GLY PHE SEQRES 39 A 702 ILE PHE HIS ASP VAL LEU SER ARG MET GLU LEU SER ASP SEQRES 40 A 702 ILE GLY ALA LEU HIS LEU ILE CYS ARG THR PRO ASP MET SEQRES 41 A 702 GLU ARG LEU THR VAL ARG LYS THR ASP SER TRP VAL GLU SEQRES 42 A 702 GLU GLU ALA PHE ARG LEU ARG LYS GLU LEU SER TYR TYR SEQRES 43 A 702 PRO SER ASP PHE SER VAL GLU TYR ASP TRP PHE LEU SER SEQRES 44 A 702 GLU VAL LYS THR ALA LEU CYS LEU LYS ASP TRP ILE GLU SEQRES 45 A 702 GLU LYS ASP GLU ASP GLU ILE CYS ALA LYS TYR GLY ILE SEQRES 46 A 702 ALA PRO GLY ASP LEU ARG ARG ILE VAL GLU THR ALA GLU SEQRES 47 A 702 TRP LEU SER ASN ALA MET ASN ARG ILE ALA GLU GLU VAL SEQRES 48 A 702 GLY ASN THR SER VAL SER GLY LEU THR GLU ARG ILE LYS SEQRES 49 A 702 HIS GLY VAL LYS GLU GLU LEU LEU GLU LEU VAL ARG ILE SEQRES 50 A 702 ARG HIS ILE GLY ARG VAL ARG ALA ARG LYS LEU TYR ASN SEQRES 51 A 702 ALA GLY ILE ARG ASN ALA GLU ASP ILE VAL ARG HIS ARG SEQRES 52 A 702 GLU LYS VAL ALA SER LEU ILE GLY ARG GLY ILE ALA GLU SEQRES 53 A 702 ARG VAL VAL GLU GLY ILE SER VAL LYS SER LEU ASN PRO SEQRES 54 A 702 GLU SER ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 VAL A 3 GLU A 20 1 18 HELIX 2 2 GLN A 30 PHE A 38 1 9 HELIX 3 3 THR A 49 LYS A 67 1 19 HELIX 4 4 LEU A 77 LYS A 89 1 13 HELIX 5 5 SER A 122 ASN A 131 1 10 HELIX 6 6 SER A 134 VAL A 139 5 6 HELIX 7 7 GLU A 146 SER A 152 5 7 HELIX 8 8 ARG A 155 ASN A 170 1 16 HELIX 9 9 ASN A 184 LEU A 192 1 9 HELIX 10 10 LYS A 230 GLU A 241 1 12 HELIX 11 11 THR A 251 LYS A 268 1 18 HELIX 12 12 GLY A 274 GLU A 281 1 8 HELIX 13 13 GLY A 285 LYS A 297 1 13 HELIX 14 14 LEU A 307 ARG A 320 1 14 HELIX 15 15 LYS A 359 GLY A 368 1 10 HELIX 16 16 GLY A 386 ARG A 388 5 3 HELIX 17 17 ASP A 389 ARG A 396 1 8 HELIX 18 18 VAL A 411 ASP A 425 1 15 HELIX 19 19 THR A 430 ASP A 440 1 11 HELIX 20 20 PHE A 443 GLU A 448 1 6 HELIX 21 21 LEU A 451 TRP A 465 1 15 HELIX 22 22 THR A 477 LEU A 486 1 10 HELIX 23 23 ASP A 489 LEU A 500 1 12 HELIX 24 24 SER A 506 THR A 517 1 12 HELIX 25 25 ASP A 529 ARG A 540 1 12 HELIX 26 26 LYS A 541 LEU A 543 5 3 HELIX 27 27 GLU A 553 GLU A 572 1 20 HELIX 28 28 ASP A 575 TYR A 583 1 9 HELIX 29 29 ALA A 586 VAL A 611 1 26 HELIX 30 30 GLY A 618 GLY A 626 1 9 HELIX 31 31 LYS A 628 GLU A 630 5 3 HELIX 32 32 LEU A 631 ARG A 636 1 6 HELIX 33 33 GLY A 641 ASN A 650 1 10 HELIX 34 34 ASN A 655 HIS A 662 1 8 HELIX 35 35 HIS A 662 GLY A 671 1 10 HELIX 36 36 GLY A 671 SER A 686 1 16 SHEET 1 A 7 ILE A 98 SER A 101 0 SHEET 2 A 7 ILE A 117 THR A 121 1 O VAL A 119 N SER A 101 SHEET 3 A 7 SER A 71 VAL A 75 1 N VAL A 75 O THR A 120 SHEET 4 A 7 CYS A 141 VAL A 144 1 O VAL A 143 N VAL A 74 SHEET 5 A 7 ARG A 174 SER A 179 1 O ARG A 174 N LEU A 142 SHEET 6 A 7 LEU A 43 ALA A 46 1 N LEU A 45 O SER A 179 SHEET 7 A 7 ASP A 195 VAL A 198 1 O ASP A 195 N LEU A 44 SHEET 1 B 8 PHE A 223 ARG A 228 0 SHEET 2 B 8 THR A 215 ASP A 220 -1 N LEU A 216 O ARG A 227 SHEET 3 B 8 LEU A 206 LEU A 211 -1 N VAL A 210 O GLU A 217 SHEET 4 B 8 GLY A 379 ILE A 384 1 O GLY A 379 N VAL A 207 SHEET 5 B 8 ARG A 342 VAL A 345 1 N VAL A 345 O ILE A 384 SHEET 6 B 8 VAL A 245 PHE A 248 1 N LEU A 246 O ILE A 344 SHEET 7 B 8 VAL A 325 ALA A 328 1 O VAL A 326 N VAL A 247 SHEET 8 B 8 PHE A 301 HIS A 302 1 N HIS A 302 O VAL A 327 SHEET 1 C 2 TYR A 349 PHE A 351 0 SHEET 2 C 2 SER A 355 ARG A 357 -1 O LYS A 356 N ARG A 350 SHEET 1 D 2 VAL A 468 GLU A 470 0 SHEET 2 D 2 LEU A 474 PRO A 476 -1 O ALA A 475 N VAL A 469 CRYST1 138.379 138.379 252.973 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007227 0.004172 0.000000 0.00000 SCALE2 0.000000 0.008344 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003953 0.00000