PDB Short entry for 2P8E HEADER HYDROLASE 22-MAR-07 2P8E TITLE CRYSTAL STRUCTURE OF THE SERINE/THREONINE PHOSPHATASE DOMAIN OF HUMAN TITLE 2 PPM1B COMPND MOL_ID: 1; COMPND 2 MOLECULE: PPM1B BETA ISOFORM VARIANT 6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SERINE/THREONINE PHOSPHATASE DOMAIN; COMPND 5 SYNONYM: PROTEIN PHOSPHATASE 2C ISOFORM BETA, PP2C-BETA; COMPND 6 EC: 3.1.3.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPM1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, HYDROLASE, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,J.FREEMAN,K.T.BAIN,C.LAU,W.XU,D.SMITH,S.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 8 15-NOV-23 2P8E 1 REMARK REVDAT 7 30-AUG-23 2P8E 1 REMARK REVDAT 6 03-FEB-21 2P8E 1 AUTHOR JRNL REMARK SEQADV REVDAT 6 2 1 LINK REVDAT 5 14-NOV-18 2P8E 1 AUTHOR REVDAT 4 18-OCT-17 2P8E 1 REMARK REVDAT 3 01-APR-08 2P8E 1 SEQADV REVDAT 2 25-MAR-08 2P8E 1 AUTHOR JRNL VERSN REVDAT 1 03-APR-07 2P8E 0 JRNL AUTH S.C.ALMO,J.B.BONANNO,J.M.SAUDER,S.EMTAGE,T.P.DILORENZO, JRNL AUTH 2 V.MALASHKEVICH,S.R.WASSERMAN,S.SWAMINATHAN,S.ESWARAMOORTHY, JRNL AUTH 3 R.AGARWAL,D.KUMARAN,M.MADEGOWDA,S.RAGUMANI,Y.PATSKOVSKY, JRNL AUTH 4 J.ALVARADO,U.A.RAMAGOPAL,J.FABER-BARATA,M.R.CHANCE,A.SALI, JRNL AUTH 5 A.FISER,Z.Y.ZHANG,D.S.LAWRENCE,S.K.BURLEY JRNL TITL STRUCTURAL GENOMICS OF PROTEIN PHOSPHATASES. JRNL REF J.STRUCT.FUNCT.GENOM. V. 8 121 2007 JRNL REFN ISSN 1345-711X JRNL PMID 18058037 JRNL DOI 10.1007/S10969-007-9036-1 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 49432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2523 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3038 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4406 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 431 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : 1.33000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.224 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4532 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6138 ; 1.503 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 568 ; 5.964 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;31.085 ;24.188 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 770 ;14.570 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;19.126 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 659 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3506 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2084 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3094 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 391 ; 0.200 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.196 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 41 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2868 ; 1.039 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4480 ; 1.578 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1899 ; 2.689 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1651 ; 4.039 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2P8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000042095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49509 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.816 REMARK 200 RESOLUTION RANGE LOW (A) : 72.932 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.18400 REMARK 200 R SYM (I) : 0.18400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.84200 REMARK 200 R SYM FOR SHELL (I) : 0.84200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1A6Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.5, 20% PEG 4000, 10% REMARK 280 ISOPROPANOL, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.19950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.35650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.15750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.35650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.19950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.15750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT A MONOMER REMARK 300 IS PROBABLY THE BIOLOGICAL UNIT OF THIS POLYPEPTIDE. REMARK 300 SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL REMARK 300 MOLECULE(S). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 87 REMARK 465 ALA A 88 REMARK 465 GLY A 89 REMARK 465 LYS A 90 REMARK 465 SER A 91 REMARK 465 GLY A 92 REMARK 465 SER A 93 REMARK 465 ALA A 94 REMARK 465 LEU A 95 REMARK 465 GLU A 96 REMARK 465 LEU A 97 REMARK 465 ASN A 125 REMARK 465 GLY A 126 REMARK 465 MET A 127 REMARK 465 SER A 296 REMARK 465 ASN A 297 REMARK 465 GLU A 298 REMARK 465 GLY A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 87 REMARK 465 ALA B 88 REMARK 465 GLY B 89 REMARK 465 LYS B 90 REMARK 465 SER B 91 REMARK 465 GLY B 92 REMARK 465 SER B 93 REMARK 465 ALA B 94 REMARK 465 LEU B 95 REMARK 465 GLU B 96 REMARK 465 LEU B 97 REMARK 465 SER B 296 REMARK 465 ASN B 297 REMARK 465 GLU B 298 REMARK 465 GLY B 299 REMARK 465 HIS B 300 REMARK 465 HIS B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303 REMARK 465 HIS B 304 REMARK 465 HIS B 305 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 462 O HOH A 494 1.98 REMARK 500 O HOH A 453 O HOH A 492 2.01 REMARK 500 O HOH A 475 O HOH A 484 2.02 REMARK 500 OG1 THR A 133 O HOH A 497 2.03 REMARK 500 O HOH B 340 O HOH B 496 2.09 REMARK 500 O HOH B 361 O HOH B 473 2.11 REMARK 500 O ASP B 277 ND1 HIS B 281 2.12 REMARK 500 OD1 ASP B 52 O HOH B 467 2.13 REMARK 500 O HOH B 329 O HOH B 502 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 454 O HOH B 512 3655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 5 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG B 118 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 189 51.36 35.53 REMARK 500 GLU B 236 -61.94 -109.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 60 OD2 REMARK 620 2 ASP A 60 OD1 44.9 REMARK 620 3 OCS A 242 OD1 85.5 102.9 REMARK 620 4 ASP A 243 OD1 87.3 130.1 82.5 REMARK 620 5 ASP A 286 OD2 173.2 141.8 90.7 86.6 REMARK 620 6 HOH A 307 O 99.3 65.8 73.1 154.1 85.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 60 OD2 REMARK 620 2 ASP B 60 OD1 47.5 REMARK 620 3 OCS B 242 OD1 80.9 101.8 REMARK 620 4 ASP B 243 OD1 78.5 124.7 76.0 REMARK 620 5 ASP B 286 OD2 165.6 146.4 89.7 88.6 REMARK 620 6 HOH B 334 O 111.4 71.9 149.5 132.6 82.1 REMARK 620 7 HOH B 355 O 101.5 68.8 71.4 146.9 85.7 78.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-8702A RELATED DB: TARGETDB DBREF 2P8E A 2 297 UNP Q4J6C0 Q4J6C0_HUMAN 2 297 DBREF 2P8E B 2 297 UNP Q4J6C0 Q4J6C0_HUMAN 2 297 SEQADV 2P8E MET A -1 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E SER A 0 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E LEU A 1 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E GLU A 298 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E GLY A 299 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E HIS A 300 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E HIS A 301 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E HIS A 302 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E HIS A 303 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E HIS A 304 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E HIS A 305 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E MET B -1 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E SER B 0 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E LEU B 1 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E GLU B 298 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E GLY B 299 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E HIS B 300 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E HIS B 301 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E HIS B 302 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E HIS B 303 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E HIS B 304 UNP Q4J6C0 EXPRESSION TAG SEQADV 2P8E HIS B 305 UNP Q4J6C0 EXPRESSION TAG SEQRES 1 A 307 MET SER LEU GLY ALA PHE LEU ASP LYS PRO LYS THR GLU SEQRES 2 A 307 LYS HIS ASN ALA HIS GLY ALA GLY ASN GLY LEU ARG TYR SEQRES 3 A 307 GLY LEU SER SER MET GLN GLY TRP ARG VAL GLU MET GLU SEQRES 4 A 307 ASP ALA HIS THR ALA VAL VAL GLY ILE PRO HIS GLY LEU SEQRES 5 A 307 GLU ASP TRP SER PHE PHE ALA VAL TYR ASP GLY HIS ALA SEQRES 6 A 307 GLY SER ARG VAL ALA ASN TYR CYS SER THR HIS LEU LEU SEQRES 7 A 307 GLU HIS ILE THR THR ASN GLU ASP PHE ARG ALA ALA GLY SEQRES 8 A 307 LYS SER GLY SER ALA LEU GLU LEU SER VAL GLU ASN VAL SEQRES 9 A 307 LYS ASN GLY ILE ARG THR GLY PHE LEU LYS ILE ASP GLU SEQRES 10 A 307 TYR MET ARG ASN PHE SER ASP LEU ARG ASN GLY MET ASP SEQRES 11 A 307 ARG SER GLY SER THR ALA VAL GLY VAL MET ILE SER PRO SEQRES 12 A 307 LYS HIS ILE TYR PHE ILE ASN CYS GLY ASP SER ARG ALA SEQRES 13 A 307 VAL LEU TYR ARG ASN GLY GLN VAL CYS PHE SER THR GLN SEQRES 14 A 307 ASP HIS LYS PRO CYS ASN PRO ARG GLU LYS GLU ARG ILE SEQRES 15 A 307 GLN ASN ALA GLY GLY SER VAL MET ILE GLN ARG VAL ASN SEQRES 16 A 307 GLY SER LEU ALA VAL SER ARG ALA LEU GLY ASP TYR ASP SEQRES 17 A 307 TYR LYS CYS VAL ASP GLY LYS GLY PRO THR GLU GLN LEU SEQRES 18 A 307 VAL SER PRO GLU PRO GLU VAL TYR GLU ILE LEU ARG ALA SEQRES 19 A 307 GLU GLU ASP GLU PHE ILE ILE LEU ALA OCS ASP GLY ILE SEQRES 20 A 307 TRP ASP VAL MET SER ASN GLU GLU LEU CYS GLU TYR VAL SEQRES 21 A 307 LYS SER ARG LEU GLU VAL SER ASP ASP LEU GLU ASN VAL SEQRES 22 A 307 CYS ASN TRP VAL VAL ASP THR CYS LEU HIS LYS GLY SER SEQRES 23 A 307 ARG ASP ASN MET SER ILE VAL LEU VAL CYS PHE SER ASN SEQRES 24 A 307 GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 307 MET SER LEU GLY ALA PHE LEU ASP LYS PRO LYS THR GLU SEQRES 2 B 307 LYS HIS ASN ALA HIS GLY ALA GLY ASN GLY LEU ARG TYR SEQRES 3 B 307 GLY LEU SER SER MET GLN GLY TRP ARG VAL GLU MET GLU SEQRES 4 B 307 ASP ALA HIS THR ALA VAL VAL GLY ILE PRO HIS GLY LEU SEQRES 5 B 307 GLU ASP TRP SER PHE PHE ALA VAL TYR ASP GLY HIS ALA SEQRES 6 B 307 GLY SER ARG VAL ALA ASN TYR CYS SER THR HIS LEU LEU SEQRES 7 B 307 GLU HIS ILE THR THR ASN GLU ASP PHE ARG ALA ALA GLY SEQRES 8 B 307 LYS SER GLY SER ALA LEU GLU LEU SER VAL GLU ASN VAL SEQRES 9 B 307 LYS ASN GLY ILE ARG THR GLY PHE LEU LYS ILE ASP GLU SEQRES 10 B 307 TYR MET ARG ASN PHE SER ASP LEU ARG ASN GLY MET ASP SEQRES 11 B 307 ARG SER GLY SER THR ALA VAL GLY VAL MET ILE SER PRO SEQRES 12 B 307 LYS HIS ILE TYR PHE ILE ASN CYS GLY ASP SER ARG ALA SEQRES 13 B 307 VAL LEU TYR ARG ASN GLY GLN VAL CYS PHE SER THR GLN SEQRES 14 B 307 ASP HIS LYS PRO CYS ASN PRO ARG GLU LYS GLU ARG ILE SEQRES 15 B 307 GLN ASN ALA GLY GLY SER VAL MET ILE GLN ARG VAL ASN SEQRES 16 B 307 GLY SER LEU ALA VAL SER ARG ALA LEU GLY ASP TYR ASP SEQRES 17 B 307 TYR LYS CYS VAL ASP GLY LYS GLY PRO THR GLU GLN LEU SEQRES 18 B 307 VAL SER PRO GLU PRO GLU VAL TYR GLU ILE LEU ARG ALA SEQRES 19 B 307 GLU GLU ASP GLU PHE ILE ILE LEU ALA OCS ASP GLY ILE SEQRES 20 B 307 TRP ASP VAL MET SER ASN GLU GLU LEU CYS GLU TYR VAL SEQRES 21 B 307 LYS SER ARG LEU GLU VAL SER ASP ASP LEU GLU ASN VAL SEQRES 22 B 307 CYS ASN TRP VAL VAL ASP THR CYS LEU HIS LYS GLY SER SEQRES 23 B 307 ARG ASP ASN MET SER ILE VAL LEU VAL CYS PHE SER ASN SEQRES 24 B 307 GLU GLY HIS HIS HIS HIS HIS HIS MODRES 2P8E OCS A 242 CYS CYSTEINESULFONIC ACID MODRES 2P8E OCS B 242 CYS CYSTEINESULFONIC ACID HET OCS A 242 9 HET OCS B 242 9 HET MG A 306 1 HET MG B 306 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM MG MAGNESIUM ION FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *431(H2 O) HELIX 1 1 SER A 65 THR A 81 1 17 HELIX 2 2 SER A 98 ASN A 119 1 22 HELIX 3 3 ASN A 173 ALA A 183 1 11 HELIX 4 4 TYR A 205 LYS A 208 5 4 HELIX 5 5 GLY A 214 GLN A 218 5 5 HELIX 6 6 OCS A 242 ASP A 247 1 6 HELIX 7 7 SER A 250 GLU A 263 1 14 HELIX 8 8 ASP A 267 LYS A 282 1 16 HELIX 9 9 SER B 65 THR B 81 1 17 HELIX 10 10 SER B 98 ARG B 118 1 21 HELIX 11 11 ASN B 119 GLY B 126 5 8 HELIX 12 12 ASN B 173 ALA B 183 1 11 HELIX 13 13 TYR B 205 LYS B 208 5 4 HELIX 14 14 GLY B 214 GLN B 218 5 5 HELIX 15 15 OCS B 242 ASP B 247 1 6 HELIX 16 16 SER B 250 SER B 265 1 16 HELIX 17 17 ASP B 267 LYS B 282 1 16 SHEET 1 A 6 LYS A 9 GLY A 19 0 SHEET 2 A 6 LEU A 22 GLY A 31 -1 O LEU A 22 N GLY A 19 SHEET 3 A 6 MET A 288 CYS A 294 -1 O CYS A 294 N ARG A 23 SHEET 4 A 6 ASP A 235 ALA A 241 -1 N LEU A 240 O VAL A 291 SHEET 5 A 6 ARG A 153 ARG A 158 -1 N TYR A 157 O PHE A 237 SHEET 6 A 6 GLN A 161 SER A 165 -1 O CYS A 163 N LEU A 156 SHEET 1 B 4 ASP A 38 ILE A 46 0 SHEET 2 B 4 LEU A 50 HIS A 62 -1 O PHE A 55 N VAL A 43 SHEET 3 B 4 GLY A 131 SER A 132 -1 O GLY A 131 N HIS A 62 SHEET 4 B 4 LEU A 202 GLY A 203 -1 O LEU A 202 N SER A 132 SHEET 1 C 5 ASP A 38 ILE A 46 0 SHEET 2 C 5 LEU A 50 HIS A 62 -1 O PHE A 55 N VAL A 43 SHEET 3 C 5 ALA A 134 ILE A 139 -1 O ILE A 139 N SER A 54 SHEET 4 C 5 HIS A 143 CYS A 149 -1 O CYS A 149 N ALA A 134 SHEET 5 C 5 GLU A 225 LEU A 230 -1 O TYR A 227 N PHE A 146 SHEET 1 D 2 VAL A 187 MET A 188 0 SHEET 2 D 2 ARG A 191 VAL A 192 -1 O ARG A 191 N MET A 188 SHEET 1 E 6 LYS B 9 GLY B 19 0 SHEET 2 E 6 LEU B 22 GLY B 31 -1 O TYR B 24 N GLY B 17 SHEET 3 E 6 MET B 288 CYS B 294 -1 O CYS B 294 N ARG B 23 SHEET 4 E 6 ASP B 235 ALA B 241 -1 N ILE B 238 O VAL B 293 SHEET 5 E 6 ARG B 153 ARG B 158 -1 N TYR B 157 O PHE B 237 SHEET 6 E 6 GLN B 161 SER B 165 -1 O CYS B 163 N LEU B 156 SHEET 1 F 4 ASP B 38 ILE B 46 0 SHEET 2 F 4 LEU B 50 HIS B 62 -1 O PHE B 55 N VAL B 43 SHEET 3 F 4 GLY B 131 SER B 132 -1 O GLY B 131 N HIS B 62 SHEET 4 F 4 LEU B 202 GLY B 203 -1 O LEU B 202 N SER B 132 SHEET 1 G 5 ASP B 38 ILE B 46 0 SHEET 2 G 5 LEU B 50 HIS B 62 -1 O PHE B 55 N VAL B 43 SHEET 3 G 5 ALA B 134 ILE B 139 -1 O ILE B 139 N SER B 54 SHEET 4 G 5 HIS B 143 CYS B 149 -1 O TYR B 145 N MET B 138 SHEET 5 G 5 GLU B 225 LEU B 230 -1 O TYR B 227 N PHE B 146 SHEET 1 H 2 VAL B 187 MET B 188 0 SHEET 2 H 2 ARG B 191 VAL B 192 -1 O ARG B 191 N MET B 188 LINK C ALA A 241 N OCS A 242 1555 1555 1.33 LINK C OCS A 242 N ASP A 243 1555 1555 1.32 LINK C ALA B 241 N OCS B 242 1555 1555 1.33 LINK C OCS B 242 N ASP B 243 1555 1555 1.33 LINK OD2 ASP A 60 MG MG A 306 1555 1555 2.25 LINK OD1 ASP A 60 MG MG A 306 1555 1555 3.14 LINK OD1 OCS A 242 MG MG A 306 1555 1555 2.87 LINK OD1 ASP A 243 MG MG A 306 1555 1555 2.14 LINK OD2 ASP A 286 MG MG A 306 1555 1555 2.14 LINK MG MG A 306 O HOH A 307 1555 1555 2.22 LINK OD2 ASP B 60 MG MG B 306 1555 1555 2.22 LINK OD1 ASP B 60 MG MG B 306 1555 1555 3.05 LINK OD1 OCS B 242 MG MG B 306 1555 1555 3.07 LINK OD1 ASP B 243 MG MG B 306 1555 1555 2.31 LINK OD2 ASP B 286 MG MG B 306 1555 1555 2.27 LINK MG MG B 306 O HOH B 334 1555 1555 2.43 LINK MG MG B 306 O HOH B 355 1555 1555 2.17 SITE 1 AC1 5 ASP A 60 OCS A 242 ASP A 243 ASP A 286 SITE 2 AC1 5 HOH A 307 SITE 1 AC2 6 ASP B 60 OCS B 242 ASP B 243 ASP B 286 SITE 2 AC2 6 HOH B 334 HOH B 355 CRYST1 52.399 92.315 118.713 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019084 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008424 0.00000