PDB Short entry for 2PAV HEADER STRUCTURAL PROTEIN 27-MAR-07 2PAV TITLE TERNARY COMPLEX OF PROFILIN-ACTIN WITH THE LAST POLY-PRO OF HUMAN VASP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-ACTIN-1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROFILIN-1; COMPND 7 CHAIN: P; COMPND 8 SYNONYM: PROFILIN I; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: VASODILATOR-STIMULATED PHOSPHOPROTEIN; COMPND 12 CHAIN: V; COMPND 13 SYNONYM: VASP; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 OTHER_DETAILS: ALPHA SKELETAL MUSCLE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: PFN1; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PET29; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS TERNARY COMPLEX, PROFILIN, ACTIN, VASP, POLY-PROLINE, LOADING POLY- KEYWDS 2 PRO SITE, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.FERRON,G.REBOWSKI,R.DOMINGUEZ REVDAT 5 30-AUG-23 2PAV 1 REMARK SEQADV SHEET LINK REVDAT 4 06-MAR-13 2PAV 1 REMARK VERSN REVDAT 3 24-FEB-09 2PAV 1 VERSN REVDAT 2 11-DEC-07 2PAV 1 JRNL REVDAT 1 23-OCT-07 2PAV 0 JRNL AUTH F.FERRON,G.REBOWSKI,S.H.LEE,R.DOMINGUEZ JRNL TITL STRUCTURAL BASIS FOR THE RECRUITMENT OF PROFILIN-ACTIN JRNL TITL 2 COMPLEXES DURING FILAMENT ELONGATION BY ENA/VASP. JRNL REF EMBO J. V. 26 4597 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17914456 JRNL DOI 10.1038/SJ.EMBOJ.7601874 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 47739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2401 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3273 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3968 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 542 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 15.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.503 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4351 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5969 ; 1.663 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 588 ; 5.920 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;35.532 ;24.153 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 761 ;14.169 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;14.340 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 669 ; 0.187 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3321 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2262 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3016 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 458 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.036 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.248 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.204 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2784 ; 1.096 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4413 ; 1.610 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1798 ; 2.730 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1520 ; 4.090 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 9 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 32 REMARK 3 RESIDUE RANGE : A 33 A 70 REMARK 3 RESIDUE RANGE : A 71 A 130 REMARK 3 RESIDUE RANGE : A 131 A 148 REMARK 3 RESIDUE RANGE : A 149 A 181 REMARK 3 RESIDUE RANGE : A 182 A 262 REMARK 3 RESIDUE RANGE : A 263 A 274 REMARK 3 RESIDUE RANGE : A 275 A 336 REMARK 3 RESIDUE RANGE : A 337 A 375 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2300 18.4390 66.4040 REMARK 3 T TENSOR REMARK 3 T11: -0.1012 T22: -0.0419 REMARK 3 T33: -0.0510 T12: -0.0087 REMARK 3 T13: 0.0025 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.2876 L22: 0.5443 REMARK 3 L33: 0.8485 L12: -0.0216 REMARK 3 L13: -0.1005 L23: 0.0485 REMARK 3 S TENSOR REMARK 3 S11: -0.0323 S12: 0.0270 S13: -0.0258 REMARK 3 S21: 0.0206 S22: 0.0156 S23: 0.0522 REMARK 3 S31: 0.1288 S32: -0.0497 S33: 0.0167 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 1 P 15 REMARK 3 RESIDUE RANGE : P 16 P 38 REMARK 3 RESIDUE RANGE : P 39 P 92 REMARK 3 RESIDUE RANGE : P 93 P 116 REMARK 3 RESIDUE RANGE : P 117 P 139 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0960 49.0400 77.8200 REMARK 3 T TENSOR REMARK 3 T11: -0.0411 T22: -0.0771 REMARK 3 T33: -0.0902 T12: -0.0240 REMARK 3 T13: 0.0106 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.1349 L22: 2.5944 REMARK 3 L33: 1.7096 L12: 0.2246 REMARK 3 L13: 0.3351 L23: -0.4357 REMARK 3 S TENSOR REMARK 3 S11: 0.0657 S12: -0.0392 S13: 0.0247 REMARK 3 S21: 0.3214 S22: -0.0577 S23: -0.0437 REMARK 3 S31: -0.2922 S32: 0.0758 S33: -0.0081 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : V 201 V 206 REMARK 3 RESIDUE RANGE : V 207 V 213 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3620 63.0330 69.2150 REMARK 3 T TENSOR REMARK 3 T11: 0.0002 T22: -0.0005 REMARK 3 T33: 0.0006 T12: -0.0021 REMARK 3 T13: -0.0004 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 8.7444 L22: 11.5629 REMARK 3 L33: 5.4278 L12: -3.1023 REMARK 3 L13: 5.0677 L23: -6.9028 REMARK 3 S TENSOR REMARK 3 S11: -0.3069 S12: 0.2419 S13: 0.7667 REMARK 3 S21: 0.2084 S22: -0.4350 S23: 0.5532 REMARK 3 S31: -0.9942 S32: 0.1193 S33: 0.7418 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PAV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042175. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90020 REMARK 200 MONOCHROMATOR : BENT CONICAL SI-MIRROR (RH REMARK 200 COATED) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47947 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.34500 REMARK 200 R SYM FOR SHELL (I) : 0.34500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2BTF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM FORMATE, 20% PEG 3350, REMARK 280 PH 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.73350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.37050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.73000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.37050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.73350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.73000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 42 REMARK 465 VAL A 43 REMARK 465 MET A 44 REMARK 465 VAL A 45 REMARK 465 GLY A 46 REMARK 465 MET A 47 REMARK 465 GLY A 48 REMARK 465 GLN A 49 REMARK 465 LYS A 50 REMARK 465 GLY V 198 REMARK 465 ALA V 199 REMARK 465 GLY V 200 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG P 135 O HOH P 268 2.06 REMARK 500 OD1 ASN A 297 O HOH A 903 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 279 CE2 TYR A 279 CD2 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 181 -144.90 -157.00 REMARK 500 VAL A 201 -40.76 -134.52 REMARK 500 ASN A 296 55.20 -143.71 REMARK 500 ASP P 26 -120.91 59.74 REMARK 500 LYS P 37 -136.62 -109.85 REMARK 500 ASN P 61 60.37 -158.77 REMARK 500 ASN P 61 19.66 -174.38 REMARK 500 THR P 105 -169.28 -107.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 602 O2B REMARK 620 2 ATP A 602 O2G 75.5 REMARK 620 3 HOH A 614 O 96.3 123.4 REMARK 620 4 HOH A 622 O 94.9 87.7 148.7 REMARK 620 5 HOH A 647 O 97.3 66.5 59.1 147.4 REMARK 620 6 HOH A 654 O 84.3 154.8 73.0 79.1 132.1 REMARK 620 7 HOH A 684 O 169.9 94.9 91.6 81.5 81.3 104.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 602 DBREF 2PAV A 1 375 UNP P68135 ACTS_RABIT 3 377 DBREF 2PAV P 1 139 UNP P07737 PROF1_HUMAN 2 140 DBREF 2PAV V 198 213 UNP P50552 VASP_HUMAN 199 214 SEQADV 2PAV HIC A 73 UNP P68135 HIS 75 MODIFIED RESIDUE SEQRES 1 A 375 ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP ASN GLY SEQRES 2 A 375 SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP ASP ALA SEQRES 3 A 375 PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG PRO ARG SEQRES 4 A 375 HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS ASP SER SEQRES 5 A 375 TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY ILE LEU SEQRES 6 A 375 THR LEU LYS TYR PRO ILE GLU HIC GLY ILE ILE THR ASN SEQRES 7 A 375 TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR PHE TYR SEQRES 8 A 375 ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO THR LEU SEQRES 9 A 375 LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN ARG GLU SEQRES 10 A 375 LYS MET THR GLN ILE MET PHE GLU THR PHE ASN VAL PRO SEQRES 11 A 375 ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER LEU TYR SEQRES 12 A 375 ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SER GLY SEQRES 13 A 375 ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU GLY TYR SEQRES 14 A 375 ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU ALA GLY SEQRES 15 A 375 ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU THR GLU SEQRES 16 A 375 ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG GLU ILE SEQRES 17 A 375 VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL ALA LEU SEQRES 18 A 375 ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SER SER SEQRES 19 A 375 SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY GLN VAL SEQRES 20 A 375 ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO GLU THR SEQRES 21 A 375 LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER ALA GLY SEQRES 22 A 375 ILE HIS GLU THR THR TYR ASN SER ILE MET LYS CYS ASP SEQRES 23 A 375 ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN VAL MET SEQRES 24 A 375 SER GLY GLY THR THR MET TYR PRO GLY ILE ALA ASP ARG SEQRES 25 A 375 MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER THR MET SEQRES 26 A 375 LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS TYR SER SEQRES 27 A 375 VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SER THR SEQRES 28 A 375 PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR ASP GLU SEQRES 29 A 375 ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE SEQRES 1 P 139 ALA GLY TRP ASN ALA TYR ILE ASP ASN LEU MET ALA ASP SEQRES 2 P 139 GLY THR CYS GLN ASP ALA ALA ILE VAL GLY TYR LYS ASP SEQRES 3 P 139 SER PRO SER VAL TRP ALA ALA VAL PRO GLY LYS THR PHE SEQRES 4 P 139 VAL ASN ILE THR PRO ALA GLU VAL GLY VAL LEU VAL GLY SEQRES 5 P 139 LYS ASP ARG SER SER PHE TYR VAL ASN GLY LEU THR LEU SEQRES 6 P 139 GLY GLY GLN LYS CYS SER VAL ILE ARG ASP SER LEU LEU SEQRES 7 P 139 GLN ASP GLY GLU PHE SER MET ASP LEU ARG THR LYS SER SEQRES 8 P 139 THR GLY GLY ALA PRO THR PHE ASN VAL THR VAL THR LYS SEQRES 9 P 139 THR ASP LYS THR LEU VAL LEU LEU MET GLY LYS GLU GLY SEQRES 10 P 139 VAL HIS GLY GLY LEU ILE ASN LYS LYS CYS TYR GLU MET SEQRES 11 P 139 ALA SER HIS LEU ARG ARG SER GLN TYR SEQRES 1 V 16 GLY ALA GLY GLY GLY PRO PRO PRO ALA PRO PRO LEU PRO SEQRES 2 V 16 ALA ALA GLN MODRES 2PAV HIC A 73 HIS 4-METHYL-HISTIDINE HET HIC A 73 11 HET CA A 601 1 HET ATP A 602 31 HETNAM HIC 4-METHYL-HISTIDINE HETNAM CA CALCIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 1 HIC C7 H11 N3 O2 FORMUL 4 CA CA 2+ FORMUL 5 ATP C10 H16 N5 O13 P3 FORMUL 6 HOH *542(H2 O) HELIX 1 1 GLY A 55 LYS A 61 1 7 HELIX 2 2 ASN A 78 ASN A 92 1 15 HELIX 3 3 ALA A 97 HIS A 101 5 5 HELIX 4 4 PRO A 112 THR A 126 1 15 HELIX 5 5 GLN A 137 SER A 145 1 9 HELIX 6 6 PRO A 172 ILE A 175 5 4 HELIX 7 7 ALA A 181 GLY A 197 1 17 HELIX 8 8 THR A 202 CYS A 217 1 16 HELIX 9 9 ASP A 222 SER A 233 1 12 HELIX 10 10 ASN A 252 THR A 260 1 9 HELIX 11 11 LEU A 261 PHE A 262 5 2 HELIX 12 12 GLN A 263 GLY A 268 5 6 HELIX 13 13 GLY A 273 LYS A 284 1 12 HELIX 14 14 CYS A 285 ASP A 288 5 4 HELIX 15 15 ILE A 289 ALA A 295 1 7 HELIX 16 16 GLY A 301 MET A 305 5 5 HELIX 17 17 GLY A 308 ALA A 321 1 14 HELIX 18 18 TYR A 337 LEU A 349 1 13 HELIX 19 19 SER A 350 GLN A 353 5 4 HELIX 20 20 LYS A 359 GLY A 366 1 8 HELIX 21 21 SER A 368 CYS A 374 1 7 HELIX 22 22 GLY P 2 ALA P 12 1 11 HELIX 23 23 THR P 38 ILE P 42 5 5 HELIX 24 24 THR P 43 GLY P 52 1 10 HELIX 25 25 SER P 57 GLY P 62 1 6 HELIX 26 26 HIS P 119 SER P 137 1 19 SHEET 1 A 6 ALA A 29 PRO A 32 0 SHEET 2 A 6 LEU A 16 PHE A 21 -1 N VAL A 17 O PHE A 31 SHEET 3 A 6 LEU A 8 ASN A 12 -1 N ASP A 11 O LYS A 18 SHEET 4 A 6 THR A 103 GLU A 107 1 O LEU A 104 N LEU A 8 SHEET 5 A 6 ALA A 131 ILE A 136 1 O TYR A 133 N LEU A 105 SHEET 6 A 6 ILE A 357 THR A 358 -1 O ILE A 357 N MET A 132 SHEET 1 B 3 TYR A 53 VAL A 54 0 SHEET 2 B 3 VAL A 35 PRO A 38 -1 N GLY A 36 O TYR A 53 SHEET 3 B 3 LEU A 65 LYS A 68 -1 O THR A 66 N ARG A 37 SHEET 1 C 2 ILE A 71 GLU A 72 0 SHEET 2 C 2 ILE A 75 ILE A 76 -1 O ILE A 75 N GLU A 72 SHEET 1 D 3 TYR A 169 ALA A 170 0 SHEET 2 D 3 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 D 3 MET A 176 LEU A 178 -1 O LEU A 178 N THR A 160 SHEET 1 E 5 TYR A 169 ALA A 170 0 SHEET 2 E 5 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 E 5 GLY A 150 SER A 155 -1 N VAL A 152 O VAL A 163 SHEET 4 E 5 ASN A 297 SER A 300 1 O SER A 300 N LEU A 153 SHEET 5 E 5 ILE A 329 ILE A 330 1 O ILE A 330 N ASN A 297 SHEET 1 F 2 LYS A 238 GLU A 241 0 SHEET 2 F 2 VAL A 247 ILE A 250 -1 O ILE A 250 N LYS A 238 SHEET 1 G 6 SER P 29 ALA P 33 0 SHEET 2 G 6 CYS P 16 GLY P 23 -1 N ILE P 21 O TRP P 31 SHEET 3 G 6 THR P 108 GLY P 114 -1 O LEU P 109 N VAL P 22 SHEET 4 G 6 ASN P 99 LYS P 104 -1 N ASN P 99 O GLY P 114 SHEET 5 G 6 GLN P 68 SER P 76 -1 N SER P 71 O ARG P 88 SHEET 6 G 6 LEU P 63 LEU P 65 -1 N LEU P 63 O CYS P 70 LINK C GLU A 72 N HIC A 73 1555 1555 1.33 LINK C HIC A 73 N GLY A 74 1555 1555 1.34 LINK CA CA A 601 O2B ATP A 602 1555 1555 2.44 LINK CA CA A 601 O2G ATP A 602 1555 1555 2.48 LINK CA CA A 601 O HOH A 614 1555 1555 2.39 LINK CA CA A 601 O HOH A 622 1555 1555 2.45 LINK CA CA A 601 O HOH A 647 1555 1555 2.95 LINK CA CA A 601 O HOH A 654 1555 1555 2.42 LINK CA CA A 601 O HOH A 684 1555 1555 2.38 CISPEP 1 ALA P 1 GLY P 2 0 -8.91 SITE 1 AC1 6 ATP A 602 HOH A 614 HOH A 622 HOH A 647 SITE 2 AC1 6 HOH A 654 HOH A 684 SITE 1 AC2 26 GLY A 13 SER A 14 GLY A 15 LEU A 16 SITE 2 AC2 26 LYS A 18 GLY A 156 ASP A 157 GLY A 158 SITE 3 AC2 26 VAL A 159 GLY A 182 ARG A 210 LYS A 213 SITE 4 AC2 26 GLU A 214 GLY A 301 GLY A 302 THR A 303 SITE 5 AC2 26 MET A 305 TYR A 306 LYS A 336 CA A 601 SITE 6 AC2 26 HOH A 622 HOH A 624 HOH A 637 HOH A 647 SITE 7 AC2 26 HOH A 836 HOH A 925 CRYST1 37.467 75.460 180.741 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026690 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005533 0.00000