PDB Short entry for 2PI4 HEADER TRANSFERASE/DNA 12-APR-07 2PI4 TITLE T7RNAP COMPLEXED WITH A PHI10 PROTEIN AND INITIATING GTPS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*TP*TP*CP*CP*TP*AP*TP*AP*GP*TP*GP*AP*GP*TP*CP*GP*TP COMPND 3 *AP*TP*TP*A)-3'; COMPND 4 CHAIN: T; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*TP*AP*AP*TP*AP*CP*GP*AP*CP*TP*CP*AP*CP*T)-3'; COMPND 8 CHAIN: P; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA-DIRECTED RNA POLYMERASE; COMPND 12 CHAIN: A; COMPND 13 EC: 2.7.7.6; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T7; SOURCE 7 ORGANISM_TAXID: 10760; SOURCE 8 GENE: 1; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS T7 RNA POLYMERASE, INITIATING NUCLEOTIDES., TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.P.KENNEDY,J.R.MOMAND,Y.W.YIN REVDAT 3 30-AUG-23 2PI4 1 REMARK REVDAT 2 24-FEB-09 2PI4 1 VERSN REVDAT 1 19-JUN-07 2PI4 0 JRNL AUTH W.P.KENNEDY,J.R.MOMAND,Y.W.YIN JRNL TITL MECHANISM FOR DE NOVO RNA SYNTHESIS AND INITIATING JRNL TITL 2 NUCLEOTIDE SPECIFICITY BY T7 RNA POLYMERASE. JRNL REF J.MOL.BIOL. V. 370 256 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17512007 JRNL DOI 10.1016/J.JMB.2007.03.041 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 497050.590 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 78.0 REMARK 3 NUMBER OF REFLECTIONS : 36766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.265 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1810 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4195 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 191 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6803 REMARK 3 NUCLEIC ACID ATOMS : 726 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 5.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.97000 REMARK 3 B22 (A**2) : -14.96000 REMARK 3 B33 (A**2) : -2.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.41 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.050 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 1646. REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER.PARAM REMARK 3 PARAMETER FILE 5 : 3DGTP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2PI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042399. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46141 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 1.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1CEZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL, 200 MM LI2SO4, 20% PEG REMARK 280 8000, 5% GLYCEROL, 15 MM MAGNESIUM ACETATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 112.22500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.89550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 112.22500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.89550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 56 REMARK 465 ARG A 57 REMARK 465 GLN A 58 REMARK 465 LEU A 59 REMARK 465 LYS A 60 REMARK 465 ALA A 61 REMARK 465 GLY A 62 REMARK 465 GLU A 63 REMARK 465 VAL A 64 REMARK 465 ALA A 65 REMARK 465 ASP A 66 REMARK 465 ASN A 67 REMARK 465 ALA A 68 REMARK 465 ALA A 69 REMARK 465 ALA A 70 REMARK 465 LYS A 71 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 180 O HOH A 995 0.48 REMARK 500 OE2 GLU A 48 O HOH A 936 0.76 REMARK 500 CG2 VAL A 174 O HOH A 908 0.93 REMARK 500 NH2 ARG A 357 O HOH A 951 1.09 REMARK 500 CD GLU A 48 O HOH A 936 1.38 REMARK 500 NZ LYS A 332 O HOH A 925 1.83 REMARK 500 CE MET A 267 O HOH A 984 1.83 REMARK 500 CE LYS A 180 O HOH A 995 1.86 REMARK 500 CD1 LEU A 402 O HOH A 931 1.88 REMARK 500 OE1 GLU A 48 O HOH A 936 1.96 REMARK 500 ND2 ASN A 131 O HOH A 980 1.99 REMARK 500 NE2 HIS A 726 O HOH A 982 2.01 REMARK 500 O HOH A 971 O HOH A 996 2.02 REMARK 500 O SER A 393 OG SER A 397 2.06 REMARK 500 NZ LYS A 329 O HOH A 968 2.09 REMARK 500 OE1 GLU A 48 O HOH A 912 2.18 REMARK 500 O THR A 118 N THR A 122 2.18 REMARK 500 CB VAL A 174 O HOH A 908 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 498 NE2 GLN A 619 3646 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 7 -77.75 -53.40 REMARK 500 LYS A 8 -178.91 -59.98 REMARK 500 ASN A 9 -16.25 65.38 REMARK 500 ASP A 13 -18.33 -46.93 REMARK 500 ASP A 26 -72.30 -47.46 REMARK 500 TYR A 28 -98.56 54.01 REMARK 500 GLU A 30 -50.80 -128.10 REMARK 500 GLN A 36 -79.62 -61.80 REMARK 500 GLU A 42 -16.97 -47.57 REMARK 500 SER A 43 34.79 -99.42 REMARK 500 TYR A 44 -45.77 -150.26 REMARK 500 ARG A 52 -8.52 -56.20 REMARK 500 MET A 54 46.08 -78.67 REMARK 500 LEU A 73 -60.62 -162.77 REMARK 500 ILE A 85 -71.97 -51.34 REMARK 500 GLU A 91 -30.96 -36.22 REMARK 500 ARG A 96 -155.07 -93.82 REMARK 500 GLN A 104 -37.76 -25.26 REMARK 500 GLU A 108 27.99 -59.99 REMARK 500 ILE A 117 -75.63 -46.70 REMARK 500 THR A 118 -77.12 -28.18 REMARK 500 ILE A 119 -70.49 -28.35 REMARK 500 ALA A 124 -71.18 -60.46 REMARK 500 THR A 127 6.43 -69.16 REMARK 500 ASP A 130 -84.40 -83.88 REMARK 500 VAL A 137 -76.33 -42.76 REMARK 500 ILE A 141 -76.36 -65.86 REMARK 500 ASP A 156 -60.35 -97.33 REMARK 500 ASN A 165 -176.81 -57.52 REMARK 500 GLU A 168 -155.73 48.20 REMARK 500 GLN A 169 130.16 69.35 REMARK 500 ASN A 171 -71.44 -47.62 REMARK 500 HIS A 176 -10.02 -170.72 REMARK 500 LYS A 179 97.92 -56.96 REMARK 500 LYS A 180 85.85 -68.21 REMARK 500 ALA A 181 -0.73 -143.22 REMARK 500 PHE A 182 89.87 46.21 REMARK 500 VAL A 185 -179.52 -55.70 REMARK 500 VAL A 186 -153.86 -113.25 REMARK 500 ASP A 189 -84.93 -51.86 REMARK 500 LEU A 191 106.98 -46.99 REMARK 500 LEU A 196 -145.90 -137.59 REMARK 500 GLU A 199 80.55 37.49 REMARK 500 MET A 226 -67.68 -22.66 REMARK 500 ASN A 233 77.23 38.13 REMARK 500 VAL A 237 -9.81 -49.17 REMARK 500 THR A 256 -66.51 -100.28 REMARK 500 ARG A 257 98.52 -59.04 REMARK 500 ALA A 262 -76.48 -26.59 REMARK 500 PRO A 266 152.43 -37.47 REMARK 500 REMARK 500 THIS ENTRY HAS 175 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT T 6 0.06 SIDE CHAIN REMARK 500 DA T 7 0.06 SIDE CHAIN REMARK 500 DA P 103 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 884 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 885 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GH3 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GH3 A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PI5 RELATED DB: PDB REMARK 900 T7 RNA POLYMERASE COMPLEXED WITH A PHI10 PROMOTER DBREF 2PI4 A 6 883 UNP P00573 RPOL_BPT7 6 883 DBREF 2PI4 T 1 22 PDB 2PI4 2PI4 1 22 DBREF 2PI4 P 101 114 PDB 2PI4 2PI4 101 114 SEQRES 1 T 22 DC DT DT DC DC DT DA DT DA DG DT DG DA SEQRES 2 T 22 DG DT DC DG DT DA DT DT DA SEQRES 1 P 14 DT DA DA DT DA DC DG DA DC DT DC DA DC SEQRES 2 P 14 DT SEQRES 1 A 878 ILE ALA LYS ASN ASP PHE SER ASP ILE GLU LEU ALA ALA SEQRES 2 A 878 ILE PRO PHE ASN THR LEU ALA ASP HIS TYR GLY GLU ARG SEQRES 3 A 878 LEU ALA ARG GLU GLN LEU ALA LEU GLU HIS GLU SER TYR SEQRES 4 A 878 GLU MET GLY GLU ALA ARG PHE ARG LYS MET PHE GLU ARG SEQRES 5 A 878 GLN LEU LYS ALA GLY GLU VAL ALA ASP ASN ALA ALA ALA SEQRES 6 A 878 LYS PRO LEU ILE THR THR LEU LEU PRO LYS MET ILE ALA SEQRES 7 A 878 ARG ILE ASN ASP TRP PHE GLU GLU VAL LYS ALA LYS ARG SEQRES 8 A 878 GLY LYS ARG PRO THR ALA PHE GLN PHE LEU GLN GLU ILE SEQRES 9 A 878 LYS PRO GLU ALA VAL ALA TYR ILE THR ILE LYS THR THR SEQRES 10 A 878 LEU ALA CYS LEU THR SER ALA ASP ASN THR THR VAL GLN SEQRES 11 A 878 ALA VAL ALA SER ALA ILE GLY ARG ALA ILE GLU ASP GLU SEQRES 12 A 878 ALA ARG PHE GLY ARG ILE ARG ASP LEU GLU ALA LYS HIS SEQRES 13 A 878 PHE LYS LYS ASN VAL GLU GLU GLN LEU ASN LYS ARG VAL SEQRES 14 A 878 GLY HIS VAL TYR LYS LYS ALA PHE MET GLN VAL VAL GLU SEQRES 15 A 878 ALA ASP MET LEU SER LYS GLY LEU LEU GLY GLY GLU ALA SEQRES 16 A 878 TRP SER SER TRP HIS LYS GLU ASP SER ILE HIS VAL GLY SEQRES 17 A 878 VAL ARG CYS ILE GLU MET LEU ILE GLU SER THR GLY MET SEQRES 18 A 878 VAL SER LEU HIS ARG GLN ASN ALA GLY VAL VAL GLY GLN SEQRES 19 A 878 ASP SER GLU THR ILE GLU LEU ALA PRO GLU TYR ALA GLU SEQRES 20 A 878 ALA ILE ALA THR ARG ALA GLY ALA LEU ALA GLY ILE SER SEQRES 21 A 878 PRO MET PHE GLN PRO CYS VAL VAL PRO PRO LYS PRO TRP SEQRES 22 A 878 THR GLY ILE THR GLY GLY GLY TYR TRP ALA ASN GLY ARG SEQRES 23 A 878 ARG PRO LEU ALA LEU VAL ARG THR HIS SER LYS LYS ALA SEQRES 24 A 878 LEU MET ARG TYR GLU ASP VAL TYR MET PRO GLU VAL TYR SEQRES 25 A 878 LYS ALA ILE ASN ILE ALA GLN ASN THR ALA TRP LYS ILE SEQRES 26 A 878 ASN LYS LYS VAL LEU ALA VAL ALA ASN VAL ILE THR LYS SEQRES 27 A 878 TRP LYS HIS CYS PRO VAL GLU ASP ILE PRO ALA ILE GLU SEQRES 28 A 878 ARG GLU GLU LEU PRO MET LYS PRO GLU ASP ILE ASP MET SEQRES 29 A 878 ASN PRO GLU ALA LEU THR ALA TRP LYS ARG ALA ALA ALA SEQRES 30 A 878 ALA VAL TYR ARG LYS ASP LYS ALA ARG LYS SER ARG ARG SEQRES 31 A 878 ILE SER LEU GLU PHE MET LEU GLU GLN ALA ASN LYS PHE SEQRES 32 A 878 ALA ASN HIS LYS ALA ILE TRP PHE PRO TYR ASN MET ASP SEQRES 33 A 878 TRP ARG GLY ARG VAL TYR ALA VAL SER MET PHE ASN PRO SEQRES 34 A 878 GLN GLY ASN ASP MET THR LYS GLY LEU LEU THR LEU ALA SEQRES 35 A 878 LYS GLY LYS PRO ILE GLY LYS GLU GLY TYR TYR TRP LEU SEQRES 36 A 878 LYS ILE HIS GLY ALA ASN CYS ALA GLY VAL ASP LYS VAL SEQRES 37 A 878 PRO PHE PRO GLU ARG ILE LYS PHE ILE GLU GLU ASN HIS SEQRES 38 A 878 GLU ASN ILE MET ALA CYS ALA LYS SER PRO LEU GLU ASN SEQRES 39 A 878 THR TRP TRP ALA GLU GLN ASP SER PRO PHE CYS PHE LEU SEQRES 40 A 878 ALA PHE CYS PHE GLU TYR ALA GLY VAL GLN HIS HIS GLY SEQRES 41 A 878 LEU SER TYR ASN CYS SER LEU PRO LEU ALA PHE ASP GLY SEQRES 42 A 878 SER CYS SER GLY ILE GLN HIS PHE SER ALA MET LEU ARG SEQRES 43 A 878 ASP GLU VAL GLY GLY ARG ALA VAL ASN LEU LEU PRO SER SEQRES 44 A 878 GLU THR VAL GLN ASP ILE TYR GLY ILE VAL ALA LYS LYS SEQRES 45 A 878 VAL ASN GLU ILE LEU GLN ALA ASP ALA ILE ASN GLY THR SEQRES 46 A 878 ASP ASN GLU VAL VAL THR VAL THR ASP GLU ASN THR GLY SEQRES 47 A 878 GLU ILE SER GLU LYS VAL LYS LEU GLY THR LYS ALA LEU SEQRES 48 A 878 ALA GLY GLN TRP LEU ALA TYR GLY VAL THR ARG SER VAL SEQRES 49 A 878 THR LYS ARG SER VAL MET THR LEU ALA TYR GLY SER LYS SEQRES 50 A 878 GLU PHE GLY PHE ARG GLN GLN VAL LEU GLU ASP THR ILE SEQRES 51 A 878 GLN PRO ALA ILE ASP SER GLY LYS GLY LEU MET PHE THR SEQRES 52 A 878 GLN PRO ASN GLN ALA ALA GLY TYR MET ALA LYS LEU ILE SEQRES 53 A 878 TRP GLU SER VAL SER VAL THR VAL VAL ALA ALA VAL GLU SEQRES 54 A 878 ALA MET ASN TRP LEU LYS SER ALA ALA LYS LEU LEU ALA SEQRES 55 A 878 ALA GLU VAL LYS ASP LYS LYS THR GLY GLU ILE LEU ARG SEQRES 56 A 878 LYS ARG CYS ALA VAL HIS TRP VAL THR PRO ASP GLY PHE SEQRES 57 A 878 PRO VAL TRP GLN GLU TYR LYS LYS PRO ILE GLN THR ARG SEQRES 58 A 878 LEU ASN LEU MET PHE LEU GLY GLN PHE ARG LEU GLN PRO SEQRES 59 A 878 THR ILE ASN THR ASN LYS ASP SER GLU ILE ASP ALA HIS SEQRES 60 A 878 LYS GLN GLU SER GLY ILE ALA PRO ASN PHE VAL HIS SER SEQRES 61 A 878 GLN ASP GLY SER HIS LEU ARG LYS THR VAL VAL TRP ALA SEQRES 62 A 878 HIS GLU LYS TYR GLY ILE GLU SER PHE ALA LEU ILE HIS SEQRES 63 A 878 ASP SER PHE GLY THR ILE PRO ALA ASP ALA ALA ASN LEU SEQRES 64 A 878 PHE LYS ALA VAL ARG GLU THR MET VAL ASP THR TYR GLU SEQRES 65 A 878 SER CYS ASP VAL LEU ALA ASP PHE TYR ASP GLN PHE ALA SEQRES 66 A 878 ASP GLN LEU HIS GLU SER GLN LEU ASP LYS MET PRO ALA SEQRES 67 A 878 LEU PRO ALA LYS GLY ASN LEU ASN LEU ARG ASP ILE LEU SEQRES 68 A 878 GLU SER ASP PHE ALA PHE ALA HET MG A 884 1 HET MG A 885 1 HET GH3 A 901 31 HET GH3 A 902 31 HETNAM MG MAGNESIUM ION HETNAM GH3 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE FORMUL 4 MG 2(MG 2+) FORMUL 6 GH3 2(C10 H16 N5 O13 P3) FORMUL 8 HOH *129(H2 O) HELIX 1 1 SER A 12 ALA A 17 1 6 HELIX 2 2 ALA A 18 HIS A 27 1 10 HELIX 3 3 GLU A 30 SER A 43 1 14 HELIX 4 4 GLY A 47 LYS A 53 1 7 HELIX 5 5 LEU A 73 LYS A 95 1 23 HELIX 6 6 PRO A 100 PHE A 105 1 6 HELIX 7 7 LYS A 110 THR A 127 1 18 HELIX 8 8 THR A 133 ARG A 150 1 18 HELIX 9 9 PHE A 151 LYS A 164 1 14 HELIX 10 10 HIS A 205 THR A 224 1 20 HELIX 11 11 ALA A 247 THR A 256 1 10 HELIX 12 12 SER A 301 TYR A 308 1 8 HELIX 13 13 MET A 313 ASN A 325 1 13 HELIX 14 14 ASN A 331 THR A 342 1 12 HELIX 15 15 ALA A 373 LYS A 378 1 6 HELIX 16 16 ALA A 381 ALA A 409 1 29 HELIX 17 17 ASN A 437 LEU A 443 1 7 HELIX 18 18 ILE A 452 GLY A 469 1 18 HELIX 19 19 PRO A 474 ASN A 485 1 12 HELIX 20 20 SER A 507 GLY A 525 1 19 HELIX 21 21 GLY A 542 LEU A 550 1 9 HELIX 22 22 ASP A 552 VAL A 559 1 8 HELIX 23 23 ASP A 569 ASP A 585 1 17 HELIX 24 24 GLY A 612 GLY A 624 1 13 HELIX 25 25 LYS A 631 THR A 636 1 6 HELIX 26 26 LEU A 637 TYR A 639 5 3 HELIX 27 27 LYS A 642 ASP A 660 1 19 HELIX 28 28 GLN A 669 VAL A 687 1 19 HELIX 29 29 VAL A 689 ALA A 708 1 20 HELIX 30 30 MET A 750 GLN A 754 5 5 HELIX 31 31 ASP A 770 GLY A 788 1 19 HELIX 32 32 GLY A 788 TYR A 802 1 15 HELIX 33 33 ASP A 820 CYS A 839 1 20 HELIX 34 34 ASP A 840 GLN A 848 1 9 HELIX 35 35 ASN A 871 ILE A 875 5 5 SHEET 1 A 2 VAL A 227 GLN A 232 0 SHEET 2 A 2 SER A 241 LEU A 246 -1 O GLU A 245 N SER A 228 SHEET 1 B 3 VAL A 297 ARG A 298 0 SHEET 2 B 3 TYR A 418 ASP A 421 1 O MET A 420 N ARG A 298 SHEET 3 B 3 VAL A 426 ALA A 428 -1 O TYR A 427 N ASN A 419 SHEET 1 C 3 ILE A 414 TRP A 415 0 SHEET 2 C 3 ALA A 327 ILE A 330 -1 N TRP A 328 O ILE A 414 SHEET 3 C 3 LEU A 444 THR A 445 -1 O THR A 445 N LYS A 329 SHEET 1 D 2 LYS A 450 PRO A 451 0 SHEET 2 D 2 ASN A 529 CYS A 530 -1 O CYS A 530 N LYS A 450 SHEET 1 E 2 HIS A 726 VAL A 728 0 SHEET 2 E 2 PRO A 734 TRP A 736 -1 O VAL A 735 N TRP A 727 SHEET 1 F 2 THR A 745 ARG A 746 0 SHEET 2 F 2 THR A 760 ILE A 761 -1 O ILE A 761 N THR A 745 LINK OD2 ASP A 537 MG MG A 885 1555 1555 1.89 LINK MG MG A 884 O3B GH3 A 901 1555 1555 3.03 SITE 1 AC1 1 GH3 A 901 SITE 1 AC2 3 ASP A 537 ASP A 812 GH3 A 902 SITE 1 AC3 7 ARG A 394 ARG A 425 ASN A 437 ILE A 810 SITE 2 AC3 7 MG A 884 GH3 A 902 DC T 5 SITE 1 AC4 9 TYR A 571 ARG A 627 TYR A 639 HIS A 784 SITE 2 AC4 9 ASP A 812 MG A 885 GH3 A 901 DC T 4 SITE 3 AC4 9 DC T 5 CRYST1 224.450 73.791 80.315 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004455 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012451 0.00000