PDB Short entry for 2PIL HEADER CELL ADHESION 02-MAR-98 2PIL TITLE CRYSTALLOGRAPHIC STRUCTURE OF PHOSPHORYLATED PILIN FROM NEISSERIA: TITLE 2 PHOSPHOSERINE SITES MODIFY TYPE IV PILUS SURFACE CHEMISTRY COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE 4 PILIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FIMBRIAE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 STRAIN: MS11; SOURCE 5 ORGANELLE: PILUS; SOURCE 6 CELLULAR_LOCATION: EXTRACELLULAR KEYWDS TYPE IV PILIN, FIBER-FORMING PROTEIN, MEMBRANE PROTEIN, DNA INDING KEYWDS 2 PROTEIN, CONTRACTILE PROTEIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR K.T.FOREST,S.A.DUNHAM,M.KOOMEY,J.A.TAINER REVDAT 7 29-JUL-20 2PIL 1 COMPND REMARK SEQADV HETNAM REVDAT 7 2 1 LINK SITE ATOM REVDAT 6 13-JUL-11 2PIL 1 VERSN REVDAT 5 23-JUN-10 2PIL 1 HETATM REVDAT 4 24-FEB-09 2PIL 1 VERSN REVDAT 3 01-APR-03 2PIL 1 JRNL REVDAT 2 06-APR-99 2PIL 1 JRNL REMARK REVDAT 1 27-MAY-98 2PIL 0 JRNL AUTH K.T.FOREST,S.A.DUNHAM,M.KOOMEY,J.A.TAINER JRNL TITL CRYSTALLOGRAPHIC STRUCTURE REVEALS PHOSPHORYLATED PILIN FROM JRNL TITL 2 NEISSERIA: PHOSPHOSERINE SITES MODIFY TYPE IV PILUS SURFACE JRNL TITL 3 CHEMISTRY AND FIBRE MORPHOLOGY. JRNL REF MOL.MICROBIOL. V. 31 743 1999 JRNL REFN ISSN 0950-382X JRNL PMID 10048019 JRNL DOI 10.1046/J.1365-2958.1999.01184.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.E.PARGE,K.T.FOREST,M.J.HICKEY,D.A.CHRISTENSEN,E.D.GETZOFF, REMARK 1 AUTH 2 J.A.TAINER REMARK 1 TITL STRUCTURE OF THE FIBRE-FORMING PROTEIN PILIN AT 2.6 A REMARK 1 TITL 2 RESOLUTION REMARK 1 REF NATURE V. 378 32 1995 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 6565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 743 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1212 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73100 REMARK 3 B22 (A**2) : 18.44300 REMARK 3 B33 (A**2) : -0.63900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 20.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 3.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.360 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.960 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.660 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.260 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.080 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X_PO4G3P.PRO REMARK 3 PARAMETER FILE 2 : PARAM3_MOD.CHO REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19.PEP REMARK 3 TOPOLOGY FILE 2 : TOPH3.CHO REMARK 3 TOPOLOGY FILE 3 : HEPT123.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 FITTING BEGAN WITH PDB MODEL 1AY2. PHOSPHOSERINE 68 WAS ADDED AND REMARK 3 A BULK SOLVENT CORRECTION WAS APPLIED. REMARK 3 REMARK 3 THE EXPECTED N-TERMINAL METHYL-PHE WAS VERIFIED BY REMARK 3 N-TERMINAL SEQUENCING BUT WAS NOT INCLUDED IN THE MODEL REMARK 3 BECAUSE IT IS NOT APPARENT IN ELECTRON DENSITY. REMARK 4 REMARK 4 2PIL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-93 REMARK 200 TEMPERATURE (KELVIN) : 290 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, ROTAVATA/AGROVATA REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6565 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 24.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: X-PLOR 3.8 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 60% REMARK 280 PEG400, 50 MM CHESS, PH 8.0, 1% BETA-OCTYL GLUCOSIDE, 0.6% 1,2,3- REMARK 280 HEPTANETRIOL. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 63.79000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.54000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 63.79000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.54000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 63.79000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.54000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 63.79000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.54000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 PT PT A 200 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MEA A 1 C1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1P SEP A 68 O HOH A 608 1554 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 146 NE2 HIS A 146 CD2 -0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 2 N - CA - C ANGL. DEV. = 23.3 DEGREES REMARK 500 VAL A 19 CA - CB - CG2 ANGL. DEV. = -9.4 DEGREES REMARK 500 TYR A 27 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 TRP A 57 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 57 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TYR A 77 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 GLU A 100 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 LEU A 106 CA - CB - CG ANGL. DEV. = 21.6 DEGREES REMARK 500 TRP A 109 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP A 109 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 GLU A 113 CA - C - N ANGL. DEV. = -14.3 DEGREES REMARK 500 TRP A 119 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP A 119 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 119 CG - CD2 - CE3 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 152 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 113 75.46 -111.85 REMARK 500 ASN A 114 99.91 -0.78 REMARK 500 ALA A 136 63.84 -115.64 REMARK 500 PRO A 148 154.99 -48.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 50 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PT A 200 PT REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 54 NE2 REMARK 620 2 HIS A 54 NE2 102.4 REMARK 620 3 HOH A 333 O 72.5 75.5 REMARK 620 4 HOH A 333 O 75.5 72.5 127.7 REMARK 620 5 HOH A 810 O 140.4 81.3 70.4 140.4 REMARK 620 6 HOH A 810 O 81.3 140.4 140.4 70.4 120.9 REMARK 620 N 1 2 3 4 5 DBREF 2PIL A 1 158 UNP P02974 FMM1_NEIGO 8 165 SEQADV 2PIL SEP A 68 UNP P02974 SER 75 MODIFIED RESIDUE SEQRES 1 A 158 MEA THR LEU ILE GLU LEU MET ILE VAL ILE ALA ILE VAL SEQRES 2 A 158 GLY ILE LEU ALA ALA VAL ALA LEU PRO ALA TYR GLN ASP SEQRES 3 A 158 TYR THR ALA ARG ALA GLN VAL SER GLU ALA ILE LEU LEU SEQRES 4 A 158 ALA GLU GLY GLN LYS SER ALA VAL THR GLU TYR TYR LEU SEQRES 5 A 158 ASN HIS GLY LYS TRP PRO GLU ASN ASN THR SER ALA GLY SEQRES 6 A 158 VAL ALA SEP PRO PRO SER ASP ILE LYS GLY LYS TYR VAL SEQRES 7 A 158 LYS GLU VAL GLU VAL LYS ASN GLY VAL VAL THR ALA THR SEQRES 8 A 158 MET LEU SER SER GLY VAL ASN ASN GLU ILE LYS GLY LYS SEQRES 9 A 158 LYS LEU SER LEU TRP ALA ARG ARG GLU ASN GLY SER VAL SEQRES 10 A 158 LYS TRP PHE CYS GLY GLN PRO VAL THR ARG THR ASP ASP SEQRES 11 A 158 ASP THR VAL ALA ASP ALA LYS ASP GLY LYS GLU ILE ASP SEQRES 12 A 158 THR LYS HIS LEU PRO SER THR CYS ARG ASP ASN PHE ASP SEQRES 13 A 158 ALA LYS MODRES 2PIL SER A 63 SER GLYCOSYLATION SITE MODRES 2PIL MEA A 1 PHE N-METHYLPHENYLALANINE MODRES 2PIL SEP A 68 SER PHOSPHOSERINE HET MEA A 1 11 HET SEP A 68 10 HET NAG B 1 14 HET GLA B 2 11 HET PT A 200 1 HET HTO A 162 10 HETNAM MEA N-METHYLPHENYLALANINE HETNAM SEP PHOSPHOSERINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM PT PLATINUM (II) ION HETNAM HTO HEPTANE-1,2,3-TRIOL HETSYN SEP PHOSPHONOSERINE FORMUL 1 MEA C10 H13 N O2 FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 NAG C8 H15 N O6 FORMUL 2 GLA C6 H12 O6 FORMUL 3 PT PT 2+ FORMUL 4 HTO C7 H16 O3 FORMUL 5 HOH *127(H2 O) HELIX 1 1 LEU A 3 HIS A 54 1 52 HELIX 2 2 ASN A 61 ALA A 64 1 4 HELIX 3 3 PRO A 70 ASP A 72 5 3 HELIX 4 4 ASN A 99 ILE A 101 5 3 HELIX 5 5 THR A 144 HIS A 146 5 3 SHEET 1 A 4 SER A 116 GLY A 122 0 SHEET 2 A 4 LYS A 105 GLU A 113 -1 N GLU A 113 O SER A 116 SHEET 3 A 4 VAL A 87 MET A 92 -1 N ALA A 90 O LEU A 106 SHEET 4 A 4 VAL A 78 LYS A 84 -1 N LYS A 84 O VAL A 87 SHEET 1 B 2 VAL A 125 ASP A 129 0 SHEET 2 B 2 THR A 132 ASP A 135 -1 N ALA A 134 O THR A 126 SSBOND 1 CYS A 121 CYS A 151 1555 1555 2.01 LINK C MEA A 1 N THR A 2 1555 1555 1.41 LINK OG SER A 63 C1 NAG B 1 1555 1555 1.40 LINK C ALA A 67 N SEP A 68 1555 1555 1.31 LINK C SEP A 68 N PRO A 69 1555 1555 1.36 LINK O3 NAG B 1 C1 GLA B 2 1555 1555 1.40 LINK NE2 HIS A 54 PT PT A 200 4566 1555 3.33 LINK NE2 HIS A 54 PT PT A 200 1555 1555 3.33 LINK PT PT A 200 O HOH A 333 1555 1555 2.71 LINK PT PT A 200 O HOH A 333 1555 4566 2.71 LINK PT PT A 200 O HOH A 810 1555 1555 1.45 LINK PT PT A 200 O HOH A 810 1555 4566 1.45 CRYST1 127.580 121.080 26.860 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007838 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008259 0.000000 0.00000 SCALE3 0.000000 0.000000 0.037230 0.00000 HETATM 1 N MEA A 1 61.043 -19.693 -3.518 1.00 39.03 N HETATM 2 CA MEA A 1 61.308 -18.351 -4.005 1.00 42.98 C HETATM 3 C MEA A 1 60.208 -17.190 -3.851 1.00 42.05 C HETATM 4 O MEA A 1 59.514 -16.916 -4.831 1.00 32.13 O HETATM 5 CB MEA A 1 61.774 -18.704 -5.436 1.00 48.62 C HETATM 6 CG MEA A 1 63.230 -19.227 -5.700 1.00 59.46 C HETATM 7 CD1 MEA A 1 64.310 -18.321 -5.932 1.00 63.35 C HETATM 8 CE1 MEA A 1 65.592 -18.783 -6.347 1.00 62.88 C HETATM 9 CZ MEA A 1 65.845 -20.147 -6.539 1.00 55.61 C HETATM 10 CE2 MEA A 1 64.803 -21.041 -6.302 1.00 58.62 C HETATM 11 CD2 MEA A 1 63.517 -20.603 -5.887 1.00 62.98 C