PDB Short entry for 2PJY HEADER CYTOKINE/CYTOKINE RECEPTOR 16-APR-07 2PJY TITLE STRUCTURAL BASIS FOR COOPERATIVE ASSEMBLY OF THE TGF-BETA SIGNALING TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFORMING GROWTH FACTOR BETA-3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TGF-BETA-3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TGF-BETA RECEPTOR TYPE-2; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 10 SYNONYM: TGF-BETA RECEPTOR TYPE II, TGFR-2, TGF-BETA TYPE II COMPND 11 RECEPTOR, TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE II, TBETAR- COMPND 12 II; COMPND 13 EC: 2.7.11.30; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: TGF-BETA RECEPTOR TYPE-1; COMPND 18 CHAIN: C; COMPND 19 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 20 SYNONYM: TGF-BETA RECEPTOR TYPE I, TGFR-1, TGF-BETA TYPE I RECEPTOR, COMPND 21 TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I, TBETAR-I, COMPND 22 SERINE/THREONINE-PROTEIN KINASE RECEPTOR R4, SKR4, ACTIVIN RECEPTOR- COMPND 23 LIKE KINASE 5, ALK-5; COMPND 24 EC: 2.7.11.30; COMPND 25 ENGINEERED: YES; COMPND 26 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TGFB3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TGFBR2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: TGFBR1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TERNARY COMPLEX, THREE FINGER TOXIN, CYTOKINE-CYTOKINE RECEPTOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.GROPPE,C.ZUBIETA REVDAT 6 30-AUG-23 2PJY 1 REMARK REVDAT 5 20-OCT-21 2PJY 1 SEQADV REVDAT 4 13-JUL-11 2PJY 1 VERSN REVDAT 3 16-MAR-10 2PJY 1 JRNL REVDAT 2 24-FEB-09 2PJY 1 VERSN REVDAT 1 05-FEB-08 2PJY 0 JRNL AUTH J.GROPPE,C.S.HINCK,P.SAMAVARCHI-TEHRANI,C.ZUBIETA, JRNL AUTH 2 J.P.SCHUERMANN,A.B.TAYLOR,P.M.SCHWARZ,J.L.WRANA,A.P.HINCK JRNL TITL COOPERATIVE ASSEMBLY OF TGF-BETA SUPERFAMILY SIGNALING JRNL TITL 2 COMPLEXES IS MEDIATED BY TWO DISPARATE MECHANISMS AND JRNL TITL 3 DISTINCT MODES OF RECEPTOR BINDING. JRNL REF MOL.CELL V. 29 157 2008 JRNL REFN ISSN 1097-2765 JRNL PMID 18243111 JRNL DOI 10.1016/J.MOLCEL.2007.11.039 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 3 NUMBER OF REFLECTIONS : 6701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 312 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 491 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2328 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 75.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.566 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.508 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 63.761 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2396 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3264 ; 0.809 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 4.640 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;36.337 ;25.146 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 399 ;14.569 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 9.433 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 367 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1798 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 934 ; 0.152 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1616 ; 0.290 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 67 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 70 ; 0.243 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.158 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1549 ; 0.101 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2456 ; 0.186 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 958 ; 0.140 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 808 ; 0.247 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): -13.4930 9.7510 -12.8850 REMARK 3 T TENSOR REMARK 3 T11: 0.6171 T22: 0.2455 REMARK 3 T33: 0.1784 T12: 0.2118 REMARK 3 T13: -0.0047 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 3.4425 L22: 10.7537 REMARK 3 L33: 2.2316 L12: 1.2650 REMARK 3 L13: 1.9817 L23: -1.2043 REMARK 3 S TENSOR REMARK 3 S11: 0.1158 S12: -0.0723 S13: -0.0596 REMARK 3 S21: 0.0088 S22: -0.1452 S23: 0.6767 REMARK 3 S31: 0.3098 S32: -0.2540 S33: 0.0294 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8120 -12.9400 0.0340 REMARK 3 T TENSOR REMARK 3 T11: 0.8137 T22: 0.3055 REMARK 3 T33: 0.4862 T12: -0.0939 REMARK 3 T13: -0.1604 T23: 0.1050 REMARK 3 L TENSOR REMARK 3 L11: 5.4893 L22: 4.0170 REMARK 3 L33: 8.7582 L12: -2.5712 REMARK 3 L13: 5.4940 L23: -1.8893 REMARK 3 S TENSOR REMARK 3 S11: 0.9639 S12: 0.3982 S13: 0.7434 REMARK 3 S21: -1.2105 S22: -0.2916 S23: 0.8684 REMARK 3 S31: 0.9989 S32: -0.6442 S33: -0.6723 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1460 10.1720 -7.3740 REMARK 3 T TENSOR REMARK 3 T11: 0.6407 T22: 0.3068 REMARK 3 T33: 0.2161 T12: 0.1525 REMARK 3 T13: -0.1015 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 3.2251 L22: 12.4868 REMARK 3 L33: 3.3905 L12: 4.3224 REMARK 3 L13: -1.2514 L23: -4.5541 REMARK 3 S TENSOR REMARK 3 S11: 0.2704 S12: -0.3088 S13: -0.1348 REMARK 3 S21: 0.5077 S22: -0.4210 S23: -0.1804 REMARK 3 S31: 0.1896 S32: 0.1215 S33: 0.1506 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 27 REMARK 3 ORIGIN FOR THE GROUP (A): -4.5810 33.0680 4.3600 REMARK 3 T TENSOR REMARK 3 T11: 1.5191 T22: 0.4529 REMARK 3 T33: -0.1206 T12: 0.2416 REMARK 3 T13: -0.1891 T23: 0.2673 REMARK 3 L TENSOR REMARK 3 L11: 32.2498 L22: 4.1842 REMARK 3 L33: 50.4218 L12: 11.6164 REMARK 3 L13: 40.3248 L23: 14.5250 REMARK 3 S TENSOR REMARK 3 S11: 1.1703 S12: -0.1358 S13: -1.0442 REMARK 3 S21: 0.2902 S22: 0.4981 S23: 0.7361 REMARK 3 S31: 1.5223 S32: -0.5878 S33: -1.6684 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 38 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6290 43.4360 -16.9710 REMARK 3 T TENSOR REMARK 3 T11: 0.8230 T22: 0.1985 REMARK 3 T33: 0.2947 T12: 0.1196 REMARK 3 T13: -0.0445 T23: -0.1679 REMARK 3 L TENSOR REMARK 3 L11: 4.3247 L22: 0.2860 REMARK 3 L33: 12.1226 L12: 0.6007 REMARK 3 L13: 2.8884 L23: -1.0358 REMARK 3 S TENSOR REMARK 3 S11: -0.8441 S12: 0.0329 S13: 1.1909 REMARK 3 S21: -0.2763 S22: 0.7373 S23: -0.8082 REMARK 3 S31: -0.1922 S32: 0.6543 S33: 0.1068 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 39 B 77 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6990 45.8350 -13.1720 REMARK 3 T TENSOR REMARK 3 T11: 0.5682 T22: 0.1791 REMARK 3 T33: 0.3147 T12: 0.0502 REMARK 3 T13: -0.0917 T23: -0.2306 REMARK 3 L TENSOR REMARK 3 L11: 7.5661 L22: 9.2049 REMARK 3 L33: 6.2362 L12: -2.2751 REMARK 3 L13: -1.7418 L23: -1.0621 REMARK 3 S TENSOR REMARK 3 S11: 0.2882 S12: 0.3082 S13: 0.6632 REMARK 3 S21: -0.4569 S22: -0.1139 S23: -0.2627 REMARK 3 S31: -0.6499 S32: 0.2581 S33: -0.1743 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 78 B 110 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7120 52.9310 -4.9690 REMARK 3 T TENSOR REMARK 3 T11: 0.9755 T22: 0.2329 REMARK 3 T33: 0.5319 T12: 0.0192 REMARK 3 T13: -0.1969 T23: -0.4263 REMARK 3 L TENSOR REMARK 3 L11: 9.2720 L22: 8.6272 REMARK 3 L33: 9.3798 L12: -6.0855 REMARK 3 L13: -3.7774 L23: -3.5481 REMARK 3 S TENSOR REMARK 3 S11: -0.1598 S12: -0.2762 S13: 1.8376 REMARK 3 S21: 0.1334 S22: 0.6143 S23: -0.7614 REMARK 3 S31: -0.9436 S32: 0.5289 S33: -0.4544 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 111 B 126 REMARK 3 ORIGIN FOR THE GROUP (A): -14.8040 44.3930 -7.5650 REMARK 3 T TENSOR REMARK 3 T11: 0.4331 T22: 0.1886 REMARK 3 T33: 0.1238 T12: 0.1840 REMARK 3 T13: -0.1339 T23: -0.2116 REMARK 3 L TENSOR REMARK 3 L11: 7.2152 L22: 21.4467 REMARK 3 L33: 9.8327 L12: -9.1170 REMARK 3 L13: -0.9324 L23: -7.7462 REMARK 3 S TENSOR REMARK 3 S11: -0.3552 S12: -0.8809 S13: 0.1949 REMARK 3 S21: 0.4920 S22: 0.3181 S23: 1.2350 REMARK 3 S31: -0.1545 S32: -0.6778 S33: 0.0371 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 10 C 37 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2550 16.2750 15.5920 REMARK 3 T TENSOR REMARK 3 T11: 0.5362 T22: 0.3144 REMARK 3 T33: 0.2339 T12: -0.1161 REMARK 3 T13: -0.0571 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 1.6044 L22: 9.6792 REMARK 3 L33: 10.2700 L12: -1.4146 REMARK 3 L13: 3.2712 L23: -3.6654 REMARK 3 S TENSOR REMARK 3 S11: -0.1809 S12: -0.1712 S13: -0.5597 REMARK 3 S21: -0.0648 S22: -0.1878 S23: -0.0237 REMARK 3 S31: 0.4261 S32: -0.3068 S33: 0.3687 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 38 C 60 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8330 19.9380 7.0430 REMARK 3 T TENSOR REMARK 3 T11: 0.5877 T22: 0.1121 REMARK 3 T33: 0.1802 T12: -0.0490 REMARK 3 T13: -0.1900 T23: -0.1031 REMARK 3 L TENSOR REMARK 3 L11: 15.9666 L22: 11.7998 REMARK 3 L33: 4.5157 L12: 2.0303 REMARK 3 L13: 3.5089 L23: -4.8323 REMARK 3 S TENSOR REMARK 3 S11: 0.5592 S12: -0.1942 S13: -0.1448 REMARK 3 S21: -0.3345 S22: -0.6657 S23: 0.4811 REMARK 3 S31: 0.3409 S32: 0.1212 S33: 0.1065 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 61 C 87 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2160 24.2880 12.7230 REMARK 3 T TENSOR REMARK 3 T11: 0.9700 T22: 0.4977 REMARK 3 T33: 0.5083 T12: 0.2304 REMARK 3 T13: 0.1124 T23: -0.1018 REMARK 3 L TENSOR REMARK 3 L11: 0.5823 L22: 7.3465 REMARK 3 L33: 10.6964 L12: -0.2449 REMARK 3 L13: 2.2890 L23: -4.4703 REMARK 3 S TENSOR REMARK 3 S11: 0.2156 S12: -0.7391 S13: 0.6437 REMARK 3 S21: 0.2815 S22: 0.2659 S23: 1.5607 REMARK 3 S31: -1.4530 S32: -2.0077 S33: -0.4816 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6710 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.59800 REMARK 200 R SYM FOR SHELL (I) : 0.63000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, SOLVE REMARK 200 STARTING MODEL: PDB ENTRY 1KTZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% PEG 3350, 0.4-0.65 M CALCIUM REMARK 280 ACETATE, 0.1-0.25M NACL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 169.57333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.78667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 127.18000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.39333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 211.96667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 169.57333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 84.78667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.39333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 127.18000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 211.96667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8880 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 9 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 37 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 42 176.84 64.06 REMARK 500 SER A 53 57.95 33.19 REMARK 500 THR A 56 -168.92 -119.49 REMARK 500 ASP B 32 -148.82 57.99 REMARK 500 ASN B 68 -145.97 -106.47 REMARK 500 GLU B 70 -81.11 -92.68 REMARK 500 LYS B 82 48.10 -88.70 REMARK 500 SER B 116 70.23 -112.36 REMARK 500 THR C 38 78.03 63.43 REMARK 500 ARG C 58 87.01 -157.22 REMARK 500 PRO C 64 -179.65 -66.83 REMARK 500 HIS C 81 24.50 47.96 REMARK 500 ASN C 83 29.12 -79.09 REMARK 500 REMARK 500 REMARK: NULL DBREF 2PJY A 1 112 UNP P10600 TGFB3_HUMAN 301 412 DBREF 2PJY B 19 126 UNP P37173 TGFR2_HUMAN 42 149 DBREF 2PJY C 9 87 UNP P36897 TGFR1_HUMAN 33 111 SEQADV 2PJY ALA B 19 UNP P37173 ASN 42 ENGINEERED MUTATION SEQADV 2PJY SER C 46 UNP P36897 MET 70 ENGINEERED MUTATION SEQRES 1 A 112 ALA LEU ASP THR ASN TYR CYS PHE ARG ASN LEU GLU GLU SEQRES 2 A 112 ASN CYS CYS VAL ARG PRO LEU TYR ILE ASP PHE ARG GLN SEQRES 3 A 112 ASP LEU GLY TRP LYS TRP VAL HIS GLU PRO LYS GLY TYR SEQRES 4 A 112 TYR ALA ASN PHE CYS SER GLY PRO CYS PRO TYR LEU ARG SEQRES 5 A 112 SER ALA ASP THR THR HIS SER THR VAL LEU GLY LEU TYR SEQRES 6 A 112 ASN THR LEU ASN PRO GLU ALA SER ALA SER PRO CYS CYS SEQRES 7 A 112 VAL PRO GLN ASP LEU GLU PRO LEU THR ILE LEU TYR TYR SEQRES 8 A 112 VAL GLY ARG THR PRO LYS VAL GLU GLN LEU SER ASN MET SEQRES 9 A 112 VAL VAL LYS SER CYS LYS CYS SER SEQRES 1 B 108 ALA GLY ALA VAL LYS PHE PRO GLN LEU CYS LYS PHE CYS SEQRES 2 B 108 ASP VAL ARG PHE SER THR CYS ASP ASN GLN LYS SER CYS SEQRES 3 B 108 MET SER ASN CYS SER ILE THR SER ILE CYS GLU LYS PRO SEQRES 4 B 108 GLN GLU VAL CYS VAL ALA VAL TRP ARG LYS ASN ASP GLU SEQRES 5 B 108 ASN ILE THR LEU GLU THR VAL CYS HIS ASP PRO LYS LEU SEQRES 6 B 108 PRO TYR HIS ASP PHE ILE LEU GLU ASP ALA ALA SER PRO SEQRES 7 B 108 LYS CYS ILE MET LYS GLU LYS LYS LYS PRO GLY GLU THR SEQRES 8 B 108 PHE PHE MET CYS SER CYS SER SER ASP GLU CYS ASN ASP SEQRES 9 B 108 ASN ILE ILE PHE SEQRES 1 C 79 ALA LEU GLN CYS PHE CYS HIS LEU CYS THR LYS ASP ASN SEQRES 2 C 79 PHE THR CYS VAL THR ASP GLY LEU CYS PHE VAL SER VAL SEQRES 3 C 79 THR GLU THR THR ASP LYS VAL ILE HIS ASN SER SER CYS SEQRES 4 C 79 ILE ALA GLU ILE ASP LEU ILE PRO ARG ASP ARG PRO PHE SEQRES 5 C 79 VAL CYS ALA PRO SER SER LYS THR GLY SER VAL THR THR SEQRES 6 C 79 THR TYR CYS CYS ASN GLN ASP HIS CYS ASN LYS ILE GLU SEQRES 7 C 79 LEU FORMUL 4 HOH *9(H2 O) HELIX 1 1 THR A 4 PHE A 8 1 5 HELIX 2 2 PHE A 24 LEU A 28 1 5 HELIX 3 3 THR A 56 ASN A 69 1 14 HELIX 4 4 GLU B 119 ASN B 121 5 3 HELIX 5 5 PRO C 59 ALA C 63 5 5 HELIX 6 6 PRO C 64 GLY C 69 1 6 SHEET 1 A 3 LEU A 2 ASP A 3 0 SHEET 2 A 3 SER A 108 SER A 112 -1 O CYS A 109 N LEU A 2 SHEET 3 A 3 CYS A 77 PRO A 80 -1 N VAL A 79 O LYS A 110 SHEET 1 B 2 CYS A 16 ARG A 18 0 SHEET 2 B 2 PHE A 43 SER A 45 -1 O PHE A 43 N ARG A 18 SHEET 1 C 2 TYR A 21 ASP A 23 0 SHEET 2 C 2 GLY A 38 TYR A 40 -1 O TYR A 39 N ILE A 22 SHEET 1 D 3 VAL A 33 GLU A 35 0 SHEET 2 D 3 LEU A 83 VAL A 92 -1 O LEU A 89 N GLU A 35 SHEET 3 D 3 THR A 95 VAL A 106 -1 O LYS A 97 N TYR A 90 SHEET 1 E 4 VAL A 33 GLU A 35 0 SHEET 2 E 4 LEU A 83 VAL A 92 -1 O LEU A 89 N GLU A 35 SHEET 3 E 4 THR B 51 ILE B 53 1 O ILE B 53 N TYR A 91 SHEET 4 E 4 LEU B 27 LYS B 29 -1 N CYS B 28 O SER B 52 SHEET 1 F 5 ASP B 32 PHE B 35 0 SHEET 2 F 5 ILE B 72 HIS B 79 -1 O LEU B 74 N ARG B 34 SHEET 3 F 5 VAL B 60 LYS B 67 -1 N ARG B 66 O THR B 73 SHEET 4 F 5 GLU B 108 CYS B 115 -1 O PHE B 111 N TRP B 65 SHEET 5 F 5 LYS B 101 LYS B 105 -1 N LYS B 103 O PHE B 110 SHEET 1 G 3 SER B 43 MET B 45 0 SHEET 2 G 3 ASN B 123 ILE B 125 -1 O ILE B 124 N CYS B 44 SHEET 3 G 3 CYS B 98 ILE B 99 1 N CYS B 98 O ILE B 125 SHEET 1 H 2 LEU C 10 PHE C 13 0 SHEET 2 H 2 THR C 23 THR C 26 -1 O THR C 26 N LEU C 10 SHEET 1 I 3 ILE C 42 ILE C 48 0 SHEET 2 I 3 LEU C 29 THR C 35 -1 N LEU C 29 O ILE C 48 SHEET 3 I 3 THR C 72 CYS C 77 -1 O CYS C 77 N CYS C 30 SSBOND 1 CYS A 7 CYS A 16 1555 1555 2.03 SSBOND 2 CYS A 15 CYS A 78 1555 1555 2.03 SSBOND 3 CYS A 44 CYS A 109 1555 1555 2.03 SSBOND 4 CYS A 48 CYS A 111 1555 1555 2.03 SSBOND 5 CYS A 77 CYS A 77 1555 8555 2.05 SSBOND 6 CYS B 28 CYS B 61 1555 1555 2.03 SSBOND 7 CYS B 31 CYS B 48 1555 1555 2.03 SSBOND 8 CYS B 38 CYS B 44 1555 1555 2.03 SSBOND 9 CYS B 54 CYS B 78 1555 1555 2.03 SSBOND 10 CYS B 98 CYS B 113 1555 1555 2.03 SSBOND 11 CYS B 115 CYS B 120 1555 1555 2.03 SSBOND 12 CYS C 12 CYS C 30 1555 1555 2.03 SSBOND 13 CYS C 14 CYS C 17 1555 1555 2.03 SSBOND 14 CYS C 24 CYS C 47 1555 1555 2.03 SSBOND 15 CYS C 62 CYS C 76 1555 1555 2.03 SSBOND 16 CYS C 77 CYS C 82 1555 1555 2.02 CISPEP 1 GLU A 35 PRO A 36 0 -2.67 CISPEP 2 ILE C 54 PRO C 55 0 -12.16 CRYST1 66.920 66.920 254.360 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014943 0.008627 0.000000 0.00000 SCALE2 0.000000 0.017255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003931 0.00000