PDB Short entry for 2PR7 HEADER HYDROLASE 03-MAY-07 2PR7 TITLE CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN (NP_599989.1) FROM TITLE 2 CORYNEBACTERIUM GLUTAMICUM ATCC 13032 KITASATO AT 1.44 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOACID DEHALOGENASE/EPOXIDE HYDROLASE FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM ATCC 13032; SOURCE 3 ORGANISM_TAXID: 196627; SOURCE 4 STRAIN: DSM 20300, JCM 1318, LMG 3730, NCIMB 10025; SOURCE 5 ATCC: 13032; SOURCE 6 GENE: NP_599989.1, CG0870; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_599989.1, UNCHARACTERIZED PROTEIN, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 25-JAN-23 2PR7 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2PR7 1 REMARK REVDAT 3 13-JUL-11 2PR7 1 VERSN REVDAT 2 24-FEB-09 2PR7 1 VERSN REVDAT 1 15-MAY-07 2PR7 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN (NP_599989.1) JRNL TITL 2 FROM CORYNEBACTERIUM GLUTAMICUM ATCC 13032 KITASATO AT 1.44 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.6 REMARK 3 NUMBER OF REFLECTIONS : 40270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2034 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 979 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 27.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2022 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 268 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : 1.94000 REMARK 3 B33 (A**2) : -1.57000 REMARK 3 B12 (A**2) : 0.56000 REMARK 3 B13 (A**2) : -0.36000 REMARK 3 B23 (A**2) : -0.04000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.311 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2127 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1410 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2901 ; 1.543 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3455 ; 0.960 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 4.871 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;35.101 ;24.681 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 348 ;12.745 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.797 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2464 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 419 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 412 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1525 ; 0.205 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1080 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1163 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 158 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.107 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.124 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 69 ; 0.301 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1437 ; 1.966 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 586 ; 0.529 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2210 ; 2.694 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 788 ; 4.781 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 678 ; 6.738 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 0 A 133 2 REMARK 3 1 B 0 B 133 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 774 ; 0.060 ; 0.100 REMARK 3 MEDIUM POSITIONAL 1 A (A): 795 ; 0.330 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 774 ; 0.320 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 795 ; 1.080 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1080 11.8880 3.8570 REMARK 3 T TENSOR REMARK 3 T11: -0.0393 T22: -0.0538 REMARK 3 T33: 0.0020 T12: -0.0167 REMARK 3 T13: 0.0068 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.1960 L22: 1.2389 REMARK 3 L33: 1.7194 L12: -0.0564 REMARK 3 L13: 0.4047 L23: 0.5767 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: 0.1389 S13: 0.0417 REMARK 3 S21: 0.0557 S22: -0.0192 S23: -0.0929 REMARK 3 S31: 0.1030 S32: 0.0038 S33: 0.0181 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 136 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5290 -3.1050 25.4500 REMARK 3 T TENSOR REMARK 3 T11: -0.0203 T22: -0.0713 REMARK 3 T33: -0.0116 T12: 0.0180 REMARK 3 T13: -0.0037 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.6810 L22: 1.0049 REMARK 3 L33: 2.1714 L12: -0.0744 REMARK 3 L13: -0.2214 L23: 0.5247 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: -0.0964 S13: -0.0087 REMARK 3 S21: -0.0459 S22: -0.0202 S23: -0.0678 REMARK 3 S31: -0.0904 S32: 0.1005 S33: 0.0219 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF REMARK 3 THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. CALCIUM IS MODELED BASED ON CRYSTALLIZATION CONDITIONS AND REMARK 3 COORDINATION ENVIRONMENT AND GEOMETRY. THE OCCUPANCIES ARE REMARK 3 SET AS 0.5 ACCORDING TO DENSITY. STRUCTURAL HOMOLOGS CONTAIN REMARK 3 MAGNESIUM AT THE CORRESPONDING SITES. REMARK 3 5. EDO MOLECULES ARE FROM CRYOPROTECTANT. REMARK 3 6. THE NOMINAL RESOLUTION IS 1.60 A WITH 5615 OBSERVED REMARK 3 REFLECTIONS BETWEEN 1.60-1.44 (40.5% COMPLETE FOR THIS SHELL) REMARK 3 INCLUDED IN THE REFINEMENT. REMARK 4 REMARK 4 2PR7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042700. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162, 0.97929 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40271 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 39.193 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 77.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 27.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 10.0% 2-PROPANOL, 0.3M REMARK 280 CALCIUM ACETATE, 0.1M MES PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 31 CD CE NZ REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 GLU A 133 CD OE1 OE2 REMARK 470 LYS B 31 CE NZ REMARK 470 ARG B 91 CD NE CZ NH1 NH2 REMARK 470 GLU B 135 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 8 -68.76 -95.13 REMARK 500 VAL A 11 -54.48 -127.84 REMARK 500 PRO A 74 30.76 -94.90 REMARK 500 MSE B 1 98.18 -69.20 REMARK 500 TYR B 8 -72.80 -95.30 REMARK 500 VAL B 11 -56.16 -130.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 137 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD2 REMARK 620 2 ALA A 9 O 101.1 REMARK 620 3 ASP A 98 OD1 112.0 97.2 REMARK 620 4 HOH A 141 O 81.0 168.3 71.5 REMARK 620 5 HOH A 204 O 100.8 104.0 136.5 86.8 REMARK 620 6 HOH A 233 O 152.4 83.0 94.3 100.5 52.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 137 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 7 OD2 REMARK 620 2 ALA B 9 O 99.2 REMARK 620 3 ASP B 98 OD1 114.2 95.9 REMARK 620 4 HOH B 140 O 82.2 170.8 75.3 REMARK 620 5 HOH B 169 O 100.9 98.4 139.1 90.2 REMARK 620 6 HOH B 210 O 155.7 83.2 89.3 99.2 55.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 137 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 137 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 139 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 370503 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2PR7 A 1 136 UNP Q6M720 Q6M720_CORGL 1 136 DBREF 2PR7 B 1 136 UNP Q6M720 Q6M720_CORGL 1 136 SEQADV 2PR7 GLY A 0 UNP Q6M720 EXPRESSION TAG SEQADV 2PR7 MSE A 1 UNP Q6M720 MET 1 MODIFIED RESIDUE SEQADV 2PR7 MSE A 90 UNP Q6M720 MET 90 MODIFIED RESIDUE SEQADV 2PR7 GLY B 0 UNP Q6M720 EXPRESSION TAG SEQADV 2PR7 MSE B 1 UNP Q6M720 MET 1 MODIFIED RESIDUE SEQADV 2PR7 MSE B 90 UNP Q6M720 MET 90 MODIFIED RESIDUE SEQRES 1 A 137 GLY MSE ARG GLY LEU ILE VAL ASP TYR ALA GLY VAL LEU SEQRES 2 A 137 ASP GLY THR ASP GLU ASP GLN ARG ARG TRP ARG ASN LEU SEQRES 3 A 137 LEU ALA ALA ALA LYS LYS ASN GLY VAL GLY THR VAL ILE SEQRES 4 A 137 LEU SER ASN ASP PRO GLY GLY LEU GLY ALA ALA PRO ILE SEQRES 5 A 137 ARG GLU LEU GLU THR ASN GLY VAL VAL ASP LYS VAL LEU SEQRES 6 A 137 LEU SER GLY GLU LEU GLY VAL GLU LYS PRO GLU GLU ALA SEQRES 7 A 137 ALA PHE GLN ALA ALA ALA ASP ALA ILE ASP LEU PRO MSE SEQRES 8 A 137 ARG ASP CYS VAL LEU VAL ASP ASP SER ILE LEU ASN VAL SEQRES 9 A 137 ARG GLY ALA VAL GLU ALA GLY LEU VAL GLY VAL TYR TYR SEQRES 10 A 137 GLN GLN PHE ASP ARG ALA VAL VAL GLU ILE VAL GLY LEU SEQRES 11 A 137 PHE GLY LEU GLU GLY GLU PHE SEQRES 1 B 137 GLY MSE ARG GLY LEU ILE VAL ASP TYR ALA GLY VAL LEU SEQRES 2 B 137 ASP GLY THR ASP GLU ASP GLN ARG ARG TRP ARG ASN LEU SEQRES 3 B 137 LEU ALA ALA ALA LYS LYS ASN GLY VAL GLY THR VAL ILE SEQRES 4 B 137 LEU SER ASN ASP PRO GLY GLY LEU GLY ALA ALA PRO ILE SEQRES 5 B 137 ARG GLU LEU GLU THR ASN GLY VAL VAL ASP LYS VAL LEU SEQRES 6 B 137 LEU SER GLY GLU LEU GLY VAL GLU LYS PRO GLU GLU ALA SEQRES 7 B 137 ALA PHE GLN ALA ALA ALA ASP ALA ILE ASP LEU PRO MSE SEQRES 8 B 137 ARG ASP CYS VAL LEU VAL ASP ASP SER ILE LEU ASN VAL SEQRES 9 B 137 ARG GLY ALA VAL GLU ALA GLY LEU VAL GLY VAL TYR TYR SEQRES 10 B 137 GLN GLN PHE ASP ARG ALA VAL VAL GLU ILE VAL GLY LEU SEQRES 11 B 137 PHE GLY LEU GLU GLY GLU PHE MODRES 2PR7 MSE A 1 MET SELENOMETHIONINE MODRES 2PR7 MSE A 90 MET SELENOMETHIONINE MODRES 2PR7 MSE B 1 MET SELENOMETHIONINE MODRES 2PR7 MSE B 90 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 90 8 HET MSE B 1 8 HET MSE B 90 8 HET CA A 137 1 HET EDO A 138 4 HET EDO A 139 4 HET CA B 137 1 HET EDO B 138 4 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 CA 2(CA 2+) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 8 HOH *268(H2 O) HELIX 1 1 THR A 15 ASN A 32 1 18 HELIX 2 2 GLY A 44 GLY A 47 5 4 HELIX 3 3 ALA A 48 ASN A 57 1 10 HELIX 4 4 SER A 66 GLY A 70 1 5 HELIX 5 5 GLU A 75 ILE A 86 1 12 HELIX 6 6 PRO A 89 ARG A 91 5 3 HELIX 7 7 SER A 99 GLY A 110 1 12 HELIX 8 8 GLN A 118 GLY A 131 1 14 HELIX 9 9 THR B 15 ASN B 32 1 18 HELIX 10 10 GLY B 44 GLY B 47 5 4 HELIX 11 11 ALA B 48 ASN B 57 1 10 HELIX 12 12 SER B 66 GLY B 70 1 5 HELIX 13 13 GLU B 75 ILE B 86 1 12 HELIX 14 14 PRO B 89 ARG B 91 5 3 HELIX 15 15 SER B 99 GLY B 110 1 12 HELIX 16 16 GLN B 118 GLY B 131 1 14 SHEET 1 A 5 LYS A 62 LEU A 65 0 SHEET 2 A 5 GLY A 35 SER A 40 1 N ILE A 38 O LEU A 64 SHEET 3 A 5 GLY A 3 VAL A 6 1 N LEU A 4 O GLY A 35 SHEET 4 A 5 CYS A 93 ASP A 97 1 O VAL A 94 N ILE A 5 SHEET 5 A 5 VAL A 112 TYR A 115 1 O VAL A 114 N LEU A 95 SHEET 1 B 5 LYS B 62 LEU B 65 0 SHEET 2 B 5 GLY B 35 SER B 40 1 N ILE B 38 O LEU B 64 SHEET 3 B 5 GLY B 3 VAL B 6 1 N LEU B 4 O GLY B 35 SHEET 4 B 5 CYS B 93 ASP B 97 1 O VAL B 94 N ILE B 5 SHEET 5 B 5 VAL B 112 TYR B 115 1 O VAL B 114 N LEU B 95 LINK C GLY A 0 N MSE A 1 1555 1555 1.35 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C PRO A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N ARG A 91 1555 1555 1.34 LINK C GLY B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N ARG B 2 1555 1555 1.33 LINK C PRO B 89 N MSE B 90 1555 1555 1.34 LINK C MSE B 90 N ARG B 91 1555 1555 1.33 LINK OD2 ASP A 7 CA CA A 137 1555 1555 2.22 LINK O ALA A 9 CA CA A 137 1555 1555 2.44 LINK OD1 ASP A 98 CA CA A 137 1555 1555 2.37 LINK CA CA A 137 O HOH A 141 1555 1555 2.43 LINK CA CA A 137 O HOH A 204 1555 1555 2.44 LINK CA CA A 137 O HOH A 233 1555 1555 2.71 LINK OD2 ASP B 7 CA CA B 137 1555 1555 2.30 LINK O ALA B 9 CA CA B 137 1555 1555 2.35 LINK OD1 ASP B 98 CA CA B 137 1555 1555 2.33 LINK CA CA B 137 O HOH B 140 1555 1555 2.36 LINK CA CA B 137 O HOH B 169 1555 1555 2.35 LINK CA CA B 137 O HOH B 210 1555 1555 3.04 CISPEP 1 LYS A 73 PRO A 74 0 3.57 CISPEP 2 LYS B 73 PRO B 74 0 3.09 SITE 1 AC1 6 ASP B 7 ALA B 9 ASP B 98 HOH B 140 SITE 2 AC1 6 HOH B 169 HOH B 210 SITE 1 AC2 6 ASP A 7 ALA A 9 ASP A 98 HOH A 141 SITE 2 AC2 6 HOH A 204 HOH A 233 SITE 1 AC3 4 LEU B 12 GLN B 19 ARG B 23 HOH B 224 SITE 1 AC4 4 LEU A 12 GLN A 19 TRP A 22 ARG A 23 SITE 1 AC5 8 ARG A 20 ASN A 24 PHE A 136 HOH A 142 SITE 2 AC5 8 HOH A 207 GLU B 17 ARG B 21 HOH B 176 CRYST1 29.149 45.153 60.777 100.72 103.86 103.31 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034310 0.008120 0.010900 0.00000 SCALE2 0.000000 0.022760 0.006010 0.00000 SCALE3 0.000000 0.000000 0.017530 0.00000