PDB Short entry for 2PT5 HEADER TRANSFERASE 08-MAY-07 2PT5 TITLE CRYSTAL STRUCTURE OF SHIKIMATE KINASE (AQ_2177) FROM AQUIFEX AEOLICUS TITLE 2 VF5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHIKIMATE KINASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: SK; COMPND 5 EC: 2.7.1.71; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: AROK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21 CONDON PLUS (DE3)-RIL-X; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS AROMATIC AMINO ACID BIOSYNTHESIS, KINASE, P-LOOP KINASE, SHIKIMATE KEYWDS 2 KINASE, SHIKIMATE PATHWAY, NUCLEOTIDE-BINDING,AMINO-ACID KEYWDS 3 BIOSYNTHESIS, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, ATP-BINDING, MAGNESIUM, METAL-BINDING, TRANSFERASE, KEYWDS 5 STRUCTURAL GENOMICS, NPPSFA, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 6 INITIATIVE, RSGI, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 7 FUNCTIONAL ANALYSES EXPDTA X-RAY DIFFRACTION AUTHOR J.JEYAKANTHAN,N.NITHYA,A.SHIMADA,D.VELMURUGAN,A.EBIHARA,A.SHINKAI, AUTHOR 2 S.KURAMITSU,Y.SHIRO,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI) REVDAT 3 13-JUL-11 2PT5 1 VERSN REVDAT 2 24-FEB-09 2PT5 1 VERSN REVDAT 1 13-MAY-08 2PT5 0 JRNL AUTH J.JEYAKANTHAN,N.NITHYA,A.SHIMADA,D.VELMURUGAN,A.EBIHARA, JRNL AUTH 2 A.SHINKAI,S.KURAMITSU,Y.SHIRO,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF SHIKIMATE KINASE (AQ_2177) FROM AQUIFEX JRNL TITL 2 AEOLICUS VF5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1609783.660 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 32667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1612 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3579 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 209 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.84000 REMARK 3 B22 (A**2) : -2.72000 REMARK 3 B33 (A**2) : 7.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.47000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.29 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.75 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 56.99 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : LIGAND.PAR REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 5 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : LIGAND.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : WATER_PROTIN.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PT5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-AUG-07. REMARK 100 THE RCSB ID CODE IS RCSB042753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790, 0.97943, 0.9000 REMARK 200 MONOCHROMATOR : SI 1 1 1 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : RH COATED BENT-CYRINDRICAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33586 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.07900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30600 REMARK 200 R SYM FOR SHELL (I) : 0.33600 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27.5% PEG 4000, 0.1M ACETATE-NAOH, 10% REMARK 280 DIOXANE, PH4.8, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.96600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6, 7 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 51.59800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -57.93200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 7 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 167 REMARK 465 GLY A 168 REMARK 465 LYS C 111 REMARK 465 ASP C 112 REMARK 465 SER C 113 REMARK 465 LYS C 114 REMARK 465 GLU C 115 REMARK 465 ARG C 116 REMARK 465 PRO C 117 REMARK 465 LEU C 118 REMARK 465 LEU C 119 REMARK 465 LYS C 120 REMARK 465 GLY C 167 REMARK 465 GLY C 168 REMARK 465 LYS D 111 REMARK 465 ASP D 112 REMARK 465 SER D 113 REMARK 465 LYS D 114 REMARK 465 GLU D 115 REMARK 465 ARG D 116 REMARK 465 PRO D 117 REMARK 465 LEU D 118 REMARK 465 LEU D 119 REMARK 465 LYS D 120 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 123 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE B 9 0.07 -65.14 REMARK 500 LEU B 41 -169.51 -125.78 REMARK 500 GLU B 147 40.47 -87.48 REMARK 500 GLU C 108 -72.98 -89.68 REMARK 500 LEU D 41 -169.04 -109.69 REMARK 500 PHE D 47 -75.39 -55.72 REMARK 500 LYS D 49 -74.00 -70.82 REMARK 500 SER D 138 -8.95 -59.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 333 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A 335 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH A 448 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH C 343 DISTANCE = 5.41 ANGSTROMS REMARK 525 HOH C 444 DISTANCE = 5.30 ANGSTROMS REMARK 525 HOH C 460 DISTANCE = 5.99 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 169 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AAE001002177.2 RELATED DB: TARGETDB DBREF 2PT5 A 1 168 UNP O67925 AROK_AQUAE 1 168 DBREF 2PT5 B 1 168 UNP O67925 AROK_AQUAE 1 168 DBREF 2PT5 C 1 168 UNP O67925 AROK_AQUAE 1 168 DBREF 2PT5 D 1 168 UNP O67925 AROK_AQUAE 1 168 SEQRES 1 A 168 MSE ARG ILE TYR LEU ILE GLY PHE MSE CYS SER GLY LYS SEQRES 2 A 168 SER THR VAL GLY SER LEU LEU SER ARG SER LEU ASN ILE SEQRES 3 A 168 PRO PHE TYR ASP VAL ASP GLU GLU VAL GLN LYS ARG GLU SEQRES 4 A 168 GLY LEU SER ILE PRO GLN ILE PHE GLU LYS LYS GLY GLU SEQRES 5 A 168 ALA TYR PHE ARG LYS LEU GLU PHE GLU VAL LEU LYS ASP SEQRES 6 A 168 LEU SER GLU LYS GLU ASN VAL VAL ILE SER THR GLY GLY SEQRES 7 A 168 GLY LEU GLY ALA ASN GLU GLU ALA LEU ASN PHE MSE LYS SEQRES 8 A 168 SER ARG GLY THR THR VAL PHE ILE ASP ILE PRO PHE GLU SEQRES 9 A 168 VAL PHE LEU GLU ARG CYS LYS ASP SER LYS GLU ARG PRO SEQRES 10 A 168 LEU LEU LYS ARG PRO LEU ASP GLU ILE LYS ASN LEU PHE SEQRES 11 A 168 GLU GLU ARG ARG LYS ILE TYR SER LYS ALA ASP ILE LYS SEQRES 12 A 168 VAL LYS GLY GLU LYS PRO PRO GLU GLU VAL VAL LYS GLU SEQRES 13 A 168 ILE LEU LEU SER LEU GLU GLY ASN ALA LEU GLY GLY SEQRES 1 B 168 MSE ARG ILE TYR LEU ILE GLY PHE MSE CYS SER GLY LYS SEQRES 2 B 168 SER THR VAL GLY SER LEU LEU SER ARG SER LEU ASN ILE SEQRES 3 B 168 PRO PHE TYR ASP VAL ASP GLU GLU VAL GLN LYS ARG GLU SEQRES 4 B 168 GLY LEU SER ILE PRO GLN ILE PHE GLU LYS LYS GLY GLU SEQRES 5 B 168 ALA TYR PHE ARG LYS LEU GLU PHE GLU VAL LEU LYS ASP SEQRES 6 B 168 LEU SER GLU LYS GLU ASN VAL VAL ILE SER THR GLY GLY SEQRES 7 B 168 GLY LEU GLY ALA ASN GLU GLU ALA LEU ASN PHE MSE LYS SEQRES 8 B 168 SER ARG GLY THR THR VAL PHE ILE ASP ILE PRO PHE GLU SEQRES 9 B 168 VAL PHE LEU GLU ARG CYS LYS ASP SER LYS GLU ARG PRO SEQRES 10 B 168 LEU LEU LYS ARG PRO LEU ASP GLU ILE LYS ASN LEU PHE SEQRES 11 B 168 GLU GLU ARG ARG LYS ILE TYR SER LYS ALA ASP ILE LYS SEQRES 12 B 168 VAL LYS GLY GLU LYS PRO PRO GLU GLU VAL VAL LYS GLU SEQRES 13 B 168 ILE LEU LEU SER LEU GLU GLY ASN ALA LEU GLY GLY SEQRES 1 C 168 MSE ARG ILE TYR LEU ILE GLY PHE MSE CYS SER GLY LYS SEQRES 2 C 168 SER THR VAL GLY SER LEU LEU SER ARG SER LEU ASN ILE SEQRES 3 C 168 PRO PHE TYR ASP VAL ASP GLU GLU VAL GLN LYS ARG GLU SEQRES 4 C 168 GLY LEU SER ILE PRO GLN ILE PHE GLU LYS LYS GLY GLU SEQRES 5 C 168 ALA TYR PHE ARG LYS LEU GLU PHE GLU VAL LEU LYS ASP SEQRES 6 C 168 LEU SER GLU LYS GLU ASN VAL VAL ILE SER THR GLY GLY SEQRES 7 C 168 GLY LEU GLY ALA ASN GLU GLU ALA LEU ASN PHE MSE LYS SEQRES 8 C 168 SER ARG GLY THR THR VAL PHE ILE ASP ILE PRO PHE GLU SEQRES 9 C 168 VAL PHE LEU GLU ARG CYS LYS ASP SER LYS GLU ARG PRO SEQRES 10 C 168 LEU LEU LYS ARG PRO LEU ASP GLU ILE LYS ASN LEU PHE SEQRES 11 C 168 GLU GLU ARG ARG LYS ILE TYR SER LYS ALA ASP ILE LYS SEQRES 12 C 168 VAL LYS GLY GLU LYS PRO PRO GLU GLU VAL VAL LYS GLU SEQRES 13 C 168 ILE LEU LEU SER LEU GLU GLY ASN ALA LEU GLY GLY SEQRES 1 D 168 MSE ARG ILE TYR LEU ILE GLY PHE MSE CYS SER GLY LYS SEQRES 2 D 168 SER THR VAL GLY SER LEU LEU SER ARG SER LEU ASN ILE SEQRES 3 D 168 PRO PHE TYR ASP VAL ASP GLU GLU VAL GLN LYS ARG GLU SEQRES 4 D 168 GLY LEU SER ILE PRO GLN ILE PHE GLU LYS LYS GLY GLU SEQRES 5 D 168 ALA TYR PHE ARG LYS LEU GLU PHE GLU VAL LEU LYS ASP SEQRES 6 D 168 LEU SER GLU LYS GLU ASN VAL VAL ILE SER THR GLY GLY SEQRES 7 D 168 GLY LEU GLY ALA ASN GLU GLU ALA LEU ASN PHE MSE LYS SEQRES 8 D 168 SER ARG GLY THR THR VAL PHE ILE ASP ILE PRO PHE GLU SEQRES 9 D 168 VAL PHE LEU GLU ARG CYS LYS ASP SER LYS GLU ARG PRO SEQRES 10 D 168 LEU LEU LYS ARG PRO LEU ASP GLU ILE LYS ASN LEU PHE SEQRES 11 D 168 GLU GLU ARG ARG LYS ILE TYR SER LYS ALA ASP ILE LYS SEQRES 12 D 168 VAL LYS GLY GLU LYS PRO PRO GLU GLU VAL VAL LYS GLU SEQRES 13 D 168 ILE LEU LEU SER LEU GLU GLY ASN ALA LEU GLY GLY MODRES 2PT5 MSE A 1 MET SELENOMETHIONINE MODRES 2PT5 MSE A 9 MET SELENOMETHIONINE MODRES 2PT5 MSE A 90 MET SELENOMETHIONINE MODRES 2PT5 MSE B 1 MET SELENOMETHIONINE MODRES 2PT5 MSE B 9 MET SELENOMETHIONINE MODRES 2PT5 MSE B 90 MET SELENOMETHIONINE MODRES 2PT5 MSE C 1 MET SELENOMETHIONINE MODRES 2PT5 MSE C 9 MET SELENOMETHIONINE MODRES 2PT5 MSE C 90 MET SELENOMETHIONINE MODRES 2PT5 MSE D 1 MET SELENOMETHIONINE MODRES 2PT5 MSE D 9 MET SELENOMETHIONINE MODRES 2PT5 MSE D 90 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 9 8 HET MSE A 90 8 HET MSE B 1 8 HET MSE B 9 8 HET MSE B 90 8 HET MSE C 1 8 HET MSE C 9 8 HET MSE C 90 8 HET MSE D 1 8 HET MSE D 9 8 HET MSE D 90 8 HET EDO C 169 4 HET PEG C 170 7 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 EDO C2 H6 O2 FORMUL 6 PEG C4 H10 O3 FORMUL 7 HOH *262(H2 O) HELIX 1 1 GLY A 12 ASN A 25 1 14 HELIX 2 2 VAL A 31 GLY A 40 1 10 HELIX 3 3 SER A 42 LYS A 50 1 9 HELIX 4 4 GLY A 51 SER A 67 1 17 HELIX 5 5 GLY A 77 ALA A 82 1 6 HELIX 6 6 ASN A 83 SER A 92 1 10 HELIX 7 7 PRO A 102 CYS A 110 1 9 HELIX 8 8 PRO A 117 ARG A 121 5 5 HELIX 9 9 PRO A 122 GLU A 125 5 4 HELIX 10 10 ILE A 126 SER A 138 1 13 HELIX 11 11 PRO A 149 GLY A 163 1 15 HELIX 12 12 GLY B 12 ASN B 25 1 14 HELIX 13 13 VAL B 31 GLY B 40 1 10 HELIX 14 14 SER B 42 LYS B 50 1 9 HELIX 15 15 GLY B 51 SER B 67 1 17 HELIX 16 16 GLY B 77 ALA B 82 1 6 HELIX 17 17 ASN B 83 GLY B 94 1 12 HELIX 18 18 PRO B 102 CYS B 110 1 9 HELIX 19 19 ASP B 124 SER B 138 1 15 HELIX 20 20 PRO B 149 GLY B 167 1 19 HELIX 21 21 GLY C 12 ASN C 25 1 14 HELIX 22 22 VAL C 31 GLY C 40 1 10 HELIX 23 23 SER C 42 GLY C 51 1 10 HELIX 24 24 GLY C 51 SER C 67 1 17 HELIX 25 25 ASN C 83 GLY C 94 1 12 HELIX 26 26 PRO C 102 CYS C 110 1 9 HELIX 27 27 GLU C 125 SER C 138 1 14 HELIX 28 28 PRO C 149 LEU C 166 1 18 HELIX 29 29 PHE D 8 SER D 11 5 4 HELIX 30 30 GLY D 12 ASN D 25 1 14 HELIX 31 31 VAL D 31 GLY D 40 1 10 HELIX 32 32 SER D 42 GLY D 51 1 10 HELIX 33 33 GLY D 51 SER D 67 1 17 HELIX 34 34 GLY D 77 ALA D 82 1 6 HELIX 35 35 ASN D 83 GLY D 94 1 12 HELIX 36 36 PRO D 102 CYS D 110 1 9 HELIX 37 37 PRO D 122 SER D 138 1 17 HELIX 38 38 PRO D 149 LEU D 166 1 18 SHEET 1 A 5 PHE A 28 ASP A 30 0 SHEET 2 A 5 VAL A 72 SER A 75 1 O SER A 75 N TYR A 29 SHEET 3 A 5 ARG A 2 ILE A 6 1 N ILE A 3 O ILE A 74 SHEET 4 A 5 THR A 95 ASP A 100 1 O VAL A 97 N TYR A 4 SHEET 5 A 5 ILE A 142 LYS A 145 1 O ILE A 142 N PHE A 98 SHEET 1 B 5 PHE B 28 ASP B 30 0 SHEET 2 B 5 VAL B 72 SER B 75 1 O SER B 75 N TYR B 29 SHEET 3 B 5 ARG B 2 ILE B 6 1 N ILE B 3 O ILE B 74 SHEET 4 B 5 THR B 95 ASP B 100 1 O VAL B 97 N TYR B 4 SHEET 5 B 5 ILE B 142 LYS B 145 1 O ILE B 142 N PHE B 98 SHEET 1 C 5 PHE C 28 ASP C 30 0 SHEET 2 C 5 VAL C 72 SER C 75 1 O VAL C 73 N TYR C 29 SHEET 3 C 5 ARG C 2 ILE C 6 1 N ILE C 3 O VAL C 72 SHEET 4 C 5 THR C 95 ASP C 100 1 O THR C 95 N TYR C 4 SHEET 5 C 5 ILE C 142 LYS C 145 1 O ILE C 142 N PHE C 98 SHEET 1 D 5 PHE D 28 ASP D 30 0 SHEET 2 D 5 VAL D 72 SER D 75 1 O SER D 75 N TYR D 29 SHEET 3 D 5 ARG D 2 ILE D 6 1 N ILE D 3 O ILE D 74 SHEET 4 D 5 THR D 95 ASP D 100 1 O VAL D 97 N TYR D 4 SHEET 5 D 5 ILE D 142 LYS D 145 1 O ILE D 142 N PHE D 98 SSBOND 1 CYS A 10 CYS A 110 1555 1555 2.04 SSBOND 2 CYS B 10 CYS B 110 1555 1555 2.03 SSBOND 3 CYS C 10 CYS C 110 1555 1555 2.04 SSBOND 4 CYS D 10 CYS D 110 1555 1555 2.04 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C PHE A 8 N MSE A 9 1555 1555 1.33 LINK C MSE A 9 N CYS A 10 1555 1555 1.33 LINK C PHE A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N LYS A 91 1555 1555 1.33 LINK C MSE B 1 N ARG B 2 1555 1555 1.33 LINK C PHE B 8 N MSE B 9 1555 1555 1.33 LINK C MSE B 9 N CYS B 10 1555 1555 1.33 LINK C PHE B 89 N MSE B 90 1555 1555 1.33 LINK C MSE B 90 N LYS B 91 1555 1555 1.33 LINK C MSE C 1 N ARG C 2 1555 1555 1.35 LINK C PHE C 8 N MSE C 9 1555 1555 1.33 LINK C MSE C 9 N CYS C 10 1555 1555 1.32 LINK C PHE C 89 N MSE C 90 1555 1555 1.33 LINK C MSE C 90 N LYS C 91 1555 1555 1.33 LINK C MSE D 1 N ARG D 2 1555 1555 1.34 LINK C PHE D 8 N MSE D 9 1555 1555 1.33 LINK C MSE D 9 N CYS D 10 1555 1555 1.33 LINK C PHE D 89 N MSE D 90 1555 1555 1.33 LINK C MSE D 90 N LYS D 91 1555 1555 1.33 SITE 1 AC1 2 LYS C 91 ASP C 141 CRYST1 51.598 57.932 97.143 90.00 90.59 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019381 0.000000 0.000201 0.00000 SCALE2 0.000000 0.017262 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010295 0.00000 HETATM 1 N MSE A 1 33.456 27.323 52.587 1.00 53.34 N HETATM 2 CA MSE A 1 34.642 28.075 53.078 1.00 48.83 C HETATM 3 C MSE A 1 35.804 27.966 52.108 1.00 43.68 C HETATM 4 O MSE A 1 36.105 26.888 51.598 1.00 42.35 O HETATM 5 CB MSE A 1 35.068 27.534 54.430 1.00 57.14 C HETATM 6 CG MSE A 1 35.353 26.058 54.392 1.00 71.34 C HETATM 7 SE MSE A 1 35.796 25.414 56.128 1.00 98.26 SE HETATM 8 CE MSE A 1 35.639 23.515 55.778 1.00 91.87 C