PDB Short entry for 2PY5 HEADER REPLICATION, TRANSFERASE/DNA 15-MAY-07 2PY5 TITLE PHI29 DNA POLYMERASE COMPLEXED WITH SINGLE-STRANDED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(GGACTTT)-3'; COMPND 3 CHAIN: J, Y, D, E, L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA POLYMERASE; COMPND 7 CHAIN: A, B; COMPND 8 SYNONYM: EARLY PROTEIN GP2; COMPND 9 EC: 2.7.7.7; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: BACILLUS PHAGE PHI29; SOURCE 5 ORGANISM_TAXID: 10756; SOURCE 6 GENE: 2, GP2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX, REPLICATION, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.J.BERMAN,S.KAMTEKAR,J.L.GOODMAN,J.M.LAZARO,M.DE VEGA,L.BLANCO, AUTHOR 2 M.SALAS,T.A.STEITZ REVDAT 5 30-AUG-23 2PY5 1 REMARK REVDAT 4 20-OCT-21 2PY5 1 REMARK SEQADV REVDAT 3 24-FEB-09 2PY5 1 VERSN REVDAT 2 07-AUG-07 2PY5 1 JRNL REMARK REVDAT 1 17-JUL-07 2PY5 0 JRNL AUTH A.J.BERMAN,S.KAMTEKAR,J.L.GOODMAN,J.M.LAZARO,M.DE VEGA, JRNL AUTH 2 L.BLANCO,M.SALAS,T.A.STEITZ JRNL TITL STRUCTURES OF PHI29 DNA POLYMERASE COMPLEXED WITH SUBSTRATE: JRNL TITL 2 THE MECHANISM OF TRANSLOCATION IN B-FAMILY POLYMERASES JRNL REF EMBO J. V. 26 3494 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17611604 JRNL DOI 10.1038/SJ.EMBOJ.7601780 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 163498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8614 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11194 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 613 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9186 REMARK 3 NUCLEIC ACID ATOMS : 532 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 1493 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.970 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10152 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 6975 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13792 ; 1.201 ; 2.034 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17005 ; 0.800 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1157 ; 6.049 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 418 ;32.810 ;24.139 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1722 ;12.333 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;12.060 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1484 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10652 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2031 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1884 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 7089 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4841 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 4971 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1154 ; 0.129 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.168 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 85 ; 0.174 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 57 ; 0.244 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5783 ; 1.689 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2311 ; 0.486 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9159 ; 2.333 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 5218 ; 2.108 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4615 ; 3.044 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000042912. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : CRYO-COOLED SI(111) DOUBLE REMARK 200 CRYSTAL. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 172311 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.601 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 49.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: COPY C OF 1XHX WITHOUT RESIDUES 359-394 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 12% PEG 20,000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 100.08900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, Y, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, L, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DG J 1 REMARK 465 DT Y 7 REMARK 465 DT D 7 REMARK 465 DT E 7 REMARK 465 DG L 1 REMARK 465 DG L 2 REMARK 465 DA L 3 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 LYS A 305 REMARK 465 ARG A 306 REMARK 465 SER A 307 REMARK 465 ARG A 308 REMARK 465 PHE A 309 REMARK 465 TYR A 310 REMARK 465 LYS A 311 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 HIS B 3 REMARK 465 MET B 4 REMARK 465 LYS B 305 REMARK 465 ARG B 306 REMARK 465 SER B 307 REMARK 465 ARG B 308 REMARK 465 PHE B 309 REMARK 465 TYR B 310 REMARK 465 LYS B 311 REMARK 465 GLY B 312 REMARK 465 ASN B 313 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT Y 6 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT Y 6 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT Y 6 C7 C6 REMARK 470 DT E 6 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT E 6 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT E 6 C7 C6 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 80 CD CE NZ REMARK 480 LYS A 135 CG CD CE NZ REMARK 480 LYS A 220 CE NZ REMARK 480 GLU A 241 CG CD OE1 OE2 REMARK 480 GLU A 375 CD OE1 OE2 REMARK 480 GLU A 408 CG CD OE1 OE2 REMARK 480 GLU A 544 CG CD OE1 OE2 REMARK 480 LYS A 557 CG CD CE NZ REMARK 480 GLU B 20 CD OE1 OE2 REMARK 480 LYS B 80 CD CE NZ REMARK 480 GLU B 314 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 9650 O HOH B 9051 2646 1.61 REMARK 500 O HOH A 9184 O HOH B 9568 2646 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC L 4 O3' DC L 4 C3' -0.070 REMARK 500 LYS A 135 CB LYS A 135 CG -0.530 REMARK 500 GLU A 241 CB GLU A 241 CG -0.174 REMARK 500 GLU A 544 CB GLU A 544 CG -0.255 REMARK 500 GLU B 314 CD GLU B 314 OE2 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG Y 1 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DG D 2 O4' - C1' - N9 ANGL. DEV. = -5.5 DEGREES REMARK 500 DA D 3 O4' - C1' - N9 ANGL. DEV. = -6.0 DEGREES REMARK 500 DC D 4 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG E 1 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA E 3 O4' - C1' - N9 ANGL. DEV. = -5.5 DEGREES REMARK 500 DT E 5 O4' - C4' - C3' ANGL. DEV. = 3.6 DEGREES REMARK 500 DT L 7 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 LYS A 135 CA - CB - CG ANGL. DEV. = 33.4 DEGREES REMARK 500 GLU A 241 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 GLU A 408 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 GLU A 544 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 21 73.38 -157.77 REMARK 500 ASN A 62 65.14 65.29 REMARK 500 ASP A 147 99.05 -69.93 REMARK 500 THR A 203 141.09 80.95 REMARK 500 VAL A 425 -89.75 -92.68 REMARK 500 TYR A 426 80.31 -160.48 REMARK 500 THR A 457 -69.74 72.14 REMARK 500 LYS A 478 -31.95 -133.53 REMARK 500 ASP A 520 79.94 -156.86 REMARK 500 ASP B 21 78.24 -159.14 REMARK 500 ASN B 62 65.40 67.99 REMARK 500 THR B 203 142.46 83.73 REMARK 500 PHE B 211 73.15 -119.29 REMARK 500 VAL B 425 -89.42 -89.63 REMARK 500 TYR B 426 81.32 -159.10 REMARK 500 THR B 457 -68.46 71.17 REMARK 500 LYS B 478 -34.69 -130.15 REMARK 500 ASP B 520 79.48 -165.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 8002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 8003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 8005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 8006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 8007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8012 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8013 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 9002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 9003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 9004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9005 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9006 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9007 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9008 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 9009 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9010 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9011 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9012 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9013 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9014 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PYJ RELATED DB: PDB REMARK 900 PHI29 DNA POLYMERASE COMPLEXED WITH PRIMER-TEMPLATE SUBSTRATE (POST- REMARK 900 TRANSLOCATED BINARY COMPLEX) REMARK 900 RELATED ID: 2PYL RELATED DB: PDB REMARK 900 PHI29 DNA POLYMERASE COMPLEXED WITH PRIMER-TEMPLATE AND INCOMING REMARK 900 NUCLEOTIDE SUBSTRATES (PRE-TRANSLOCATED TERNARY COMPLEX) REMARK 900 RELATED ID: 2PZS RELATED DB: PDB REMARK 900 PHI29 DNA POLYMERASE COMPLEXED WITH PRIMER-TEMPLATE AND INCOMING REMARK 900 NUCLEOTIDE SUBSTRATES (PRE-TRANSLOCATED TERNARY COMPLEX) DBREF 2PY5 A 1 575 UNP P03680 DPOL_BPPH2 1 575 DBREF 2PY5 B 1 575 UNP P03680 DPOL_BPPH2 1 575 DBREF 2PY5 J 1 7 PDB 2PY5 2PY5 1 7 DBREF 2PY5 Y 1 7 PDB 2PY5 2PY5 1 7 DBREF 2PY5 D 1 7 PDB 2PY5 2PY5 1 7 DBREF 2PY5 E 1 7 PDB 2PY5 2PY5 1 7 DBREF 2PY5 L 1 7 PDB 2PY5 2PY5 1 7 SEQADV 2PY5 ALA A 12 UNP P03680 ASP 12 ENGINEERED MUTATION SEQADV 2PY5 ALA A 66 UNP P03680 ASP 66 ENGINEERED MUTATION SEQADV 2PY5 ALA B 12 UNP P03680 ASP 12 ENGINEERED MUTATION SEQADV 2PY5 ALA B 66 UNP P03680 ASP 66 ENGINEERED MUTATION SEQRES 1 J 7 DG DG DA DC DT DT DT SEQRES 1 Y 7 DG DG DA DC DT DT DT SEQRES 1 D 7 DG DG DA DC DT DT DT SEQRES 1 E 7 DG DG DA DC DT DT DT SEQRES 1 L 7 DG DG DA DC DT DT DT SEQRES 1 A 575 MET LYS HIS MET PRO ARG LYS MET TYR SER CYS ALA PHE SEQRES 2 A 575 GLU THR THR THR LYS VAL GLU ASP CYS ARG VAL TRP ALA SEQRES 3 A 575 TYR GLY TYR MET ASN ILE GLU ASP HIS SER GLU TYR LYS SEQRES 4 A 575 ILE GLY ASN SER LEU ASP GLU PHE MET ALA TRP VAL LEU SEQRES 5 A 575 LYS VAL GLN ALA ASP LEU TYR PHE HIS ASN LEU LYS PHE SEQRES 6 A 575 ALA GLY ALA PHE ILE ILE ASN TRP LEU GLU ARG ASN GLY SEQRES 7 A 575 PHE LYS TRP SER ALA ASP GLY LEU PRO ASN THR TYR ASN SEQRES 8 A 575 THR ILE ILE SER ARG MET GLY GLN TRP TYR MET ILE ASP SEQRES 9 A 575 ILE CYS LEU GLY TYR LYS GLY LYS ARG LYS ILE HIS THR SEQRES 10 A 575 VAL ILE TYR ASP SER LEU LYS LYS LEU PRO PHE PRO VAL SEQRES 11 A 575 LYS LYS ILE ALA LYS ASP PHE LYS LEU THR VAL LEU LYS SEQRES 12 A 575 GLY ASP ILE ASP TYR HIS LYS GLU ARG PRO VAL GLY TYR SEQRES 13 A 575 LYS ILE THR PRO GLU GLU TYR ALA TYR ILE LYS ASN ASP SEQRES 14 A 575 ILE GLN ILE ILE ALA GLU ALA LEU LEU ILE GLN PHE LYS SEQRES 15 A 575 GLN GLY LEU ASP ARG MET THR ALA GLY SER ASP SER LEU SEQRES 16 A 575 LYS GLY PHE LYS ASP ILE ILE THR THR LYS LYS PHE LYS SEQRES 17 A 575 LYS VAL PHE PRO THR LEU SER LEU GLY LEU ASP LYS GLU SEQRES 18 A 575 VAL ARG TYR ALA TYR ARG GLY GLY PHE THR TRP LEU ASN SEQRES 19 A 575 ASP ARG PHE LYS GLU LYS GLU ILE GLY GLU GLY MET VAL SEQRES 20 A 575 PHE ASP VAL ASN SER LEU TYR PRO ALA GLN MET TYR SER SEQRES 21 A 575 ARG LEU LEU PRO TYR GLY GLU PRO ILE VAL PHE GLU GLY SEQRES 22 A 575 LYS TYR VAL TRP ASP GLU ASP TYR PRO LEU HIS ILE GLN SEQRES 23 A 575 HIS ILE ARG CYS GLU PHE GLU LEU LYS GLU GLY TYR ILE SEQRES 24 A 575 PRO THR ILE GLN ILE LYS ARG SER ARG PHE TYR LYS GLY SEQRES 25 A 575 ASN GLU TYR LEU LYS SER SER GLY GLY GLU ILE ALA ASP SEQRES 26 A 575 LEU TRP LEU SER ASN VAL ASP LEU GLU LEU MET LYS GLU SEQRES 27 A 575 HIS TYR ASP LEU TYR ASN VAL GLU TYR ILE SER GLY LEU SEQRES 28 A 575 LYS PHE LYS ALA THR THR GLY LEU PHE LYS ASP PHE ILE SEQRES 29 A 575 ASP LYS TRP THR TYR ILE LYS THR THR SER GLU GLY ALA SEQRES 30 A 575 ILE LYS GLN LEU ALA LYS LEU MET LEU ASN SER LEU TYR SEQRES 31 A 575 GLY LYS PHE ALA SER ASN PRO ASP VAL THR GLY LYS VAL SEQRES 32 A 575 PRO TYR LEU LYS GLU ASN GLY ALA LEU GLY PHE ARG LEU SEQRES 33 A 575 GLY GLU GLU GLU THR LYS ASP PRO VAL TYR THR PRO MET SEQRES 34 A 575 GLY VAL PHE ILE THR ALA TRP ALA ARG TYR THR THR ILE SEQRES 35 A 575 THR ALA ALA GLN ALA CYS TYR ASP ARG ILE ILE TYR CYS SEQRES 36 A 575 ASP THR ASP SER ILE HIS LEU THR GLY THR GLU ILE PRO SEQRES 37 A 575 ASP VAL ILE LYS ASP ILE VAL ASP PRO LYS LYS LEU GLY SEQRES 38 A 575 TYR TRP ALA HIS GLU SER THR PHE LYS ARG ALA LYS TYR SEQRES 39 A 575 LEU ARG GLN LYS THR TYR ILE GLN ASP ILE TYR MET LYS SEQRES 40 A 575 GLU VAL ASP GLY LYS LEU VAL GLU GLY SER PRO ASP ASP SEQRES 41 A 575 TYR THR ASP ILE LYS PHE SER VAL LYS CYS ALA GLY MET SEQRES 42 A 575 THR ASP LYS ILE LYS LYS GLU VAL THR PHE GLU ASN PHE SEQRES 43 A 575 LYS VAL GLY PHE SER ARG LYS MET LYS PRO LYS PRO VAL SEQRES 44 A 575 GLN VAL PRO GLY GLY VAL VAL LEU VAL ASP ASP THR PHE SEQRES 45 A 575 THR ILE LYS SEQRES 1 B 575 MET LYS HIS MET PRO ARG LYS MET TYR SER CYS ALA PHE SEQRES 2 B 575 GLU THR THR THR LYS VAL GLU ASP CYS ARG VAL TRP ALA SEQRES 3 B 575 TYR GLY TYR MET ASN ILE GLU ASP HIS SER GLU TYR LYS SEQRES 4 B 575 ILE GLY ASN SER LEU ASP GLU PHE MET ALA TRP VAL LEU SEQRES 5 B 575 LYS VAL GLN ALA ASP LEU TYR PHE HIS ASN LEU LYS PHE SEQRES 6 B 575 ALA GLY ALA PHE ILE ILE ASN TRP LEU GLU ARG ASN GLY SEQRES 7 B 575 PHE LYS TRP SER ALA ASP GLY LEU PRO ASN THR TYR ASN SEQRES 8 B 575 THR ILE ILE SER ARG MET GLY GLN TRP TYR MET ILE ASP SEQRES 9 B 575 ILE CYS LEU GLY TYR LYS GLY LYS ARG LYS ILE HIS THR SEQRES 10 B 575 VAL ILE TYR ASP SER LEU LYS LYS LEU PRO PHE PRO VAL SEQRES 11 B 575 LYS LYS ILE ALA LYS ASP PHE LYS LEU THR VAL LEU LYS SEQRES 12 B 575 GLY ASP ILE ASP TYR HIS LYS GLU ARG PRO VAL GLY TYR SEQRES 13 B 575 LYS ILE THR PRO GLU GLU TYR ALA TYR ILE LYS ASN ASP SEQRES 14 B 575 ILE GLN ILE ILE ALA GLU ALA LEU LEU ILE GLN PHE LYS SEQRES 15 B 575 GLN GLY LEU ASP ARG MET THR ALA GLY SER ASP SER LEU SEQRES 16 B 575 LYS GLY PHE LYS ASP ILE ILE THR THR LYS LYS PHE LYS SEQRES 17 B 575 LYS VAL PHE PRO THR LEU SER LEU GLY LEU ASP LYS GLU SEQRES 18 B 575 VAL ARG TYR ALA TYR ARG GLY GLY PHE THR TRP LEU ASN SEQRES 19 B 575 ASP ARG PHE LYS GLU LYS GLU ILE GLY GLU GLY MET VAL SEQRES 20 B 575 PHE ASP VAL ASN SER LEU TYR PRO ALA GLN MET TYR SER SEQRES 21 B 575 ARG LEU LEU PRO TYR GLY GLU PRO ILE VAL PHE GLU GLY SEQRES 22 B 575 LYS TYR VAL TRP ASP GLU ASP TYR PRO LEU HIS ILE GLN SEQRES 23 B 575 HIS ILE ARG CYS GLU PHE GLU LEU LYS GLU GLY TYR ILE SEQRES 24 B 575 PRO THR ILE GLN ILE LYS ARG SER ARG PHE TYR LYS GLY SEQRES 25 B 575 ASN GLU TYR LEU LYS SER SER GLY GLY GLU ILE ALA ASP SEQRES 26 B 575 LEU TRP LEU SER ASN VAL ASP LEU GLU LEU MET LYS GLU SEQRES 27 B 575 HIS TYR ASP LEU TYR ASN VAL GLU TYR ILE SER GLY LEU SEQRES 28 B 575 LYS PHE LYS ALA THR THR GLY LEU PHE LYS ASP PHE ILE SEQRES 29 B 575 ASP LYS TRP THR TYR ILE LYS THR THR SER GLU GLY ALA SEQRES 30 B 575 ILE LYS GLN LEU ALA LYS LEU MET LEU ASN SER LEU TYR SEQRES 31 B 575 GLY LYS PHE ALA SER ASN PRO ASP VAL THR GLY LYS VAL SEQRES 32 B 575 PRO TYR LEU LYS GLU ASN GLY ALA LEU GLY PHE ARG LEU SEQRES 33 B 575 GLY GLU GLU GLU THR LYS ASP PRO VAL TYR THR PRO MET SEQRES 34 B 575 GLY VAL PHE ILE THR ALA TRP ALA ARG TYR THR THR ILE SEQRES 35 B 575 THR ALA ALA GLN ALA CYS TYR ASP ARG ILE ILE TYR CYS SEQRES 36 B 575 ASP THR ASP SER ILE HIS LEU THR GLY THR GLU ILE PRO SEQRES 37 B 575 ASP VAL ILE LYS ASP ILE VAL ASP PRO LYS LYS LEU GLY SEQRES 38 B 575 TYR TRP ALA HIS GLU SER THR PHE LYS ARG ALA LYS TYR SEQRES 39 B 575 LEU ARG GLN LYS THR TYR ILE GLN ASP ILE TYR MET LYS SEQRES 40 B 575 GLU VAL ASP GLY LYS LEU VAL GLU GLY SER PRO ASP ASP SEQRES 41 B 575 TYR THR ASP ILE LYS PHE SER VAL LYS CYS ALA GLY MET SEQRES 42 B 575 THR ASP LYS ILE LYS LYS GLU VAL THR PHE GLU ASN PHE SEQRES 43 B 575 LYS VAL GLY PHE SER ARG LYS MET LYS PRO LYS PRO VAL SEQRES 44 B 575 GLN VAL PRO GLY GLY VAL VAL LEU VAL ASP ASP THR PHE SEQRES 45 B 575 THR ILE LYS HET EDO A8001 4 HET EDO A8004 4 HET EDO A8008 4 HET EDO A8009 4 HET EDO A8010 4 HET EDO A8011 4 HET EDO A8012 4 HET EDO A8013 4 HET EDO A9001 4 HET EDO A9005 4 HET EDO A9006 4 HET EDO A9007 4 HET EDO A9008 4 HET EDO A9010 4 HET EDO A9011 4 HET EDO A9012 4 HET EDO A9013 4 HET EDO A9014 4 HET EDO B8002 4 HET EDO B8003 4 HET EDO B8005 4 HET EDO B8006 4 HET EDO B8007 4 HET EDO B9002 4 HET EDO B9003 4 HET EDO B9004 4 HET EDO B9009 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 8 EDO 27(C2 H6 O2) FORMUL 35 HOH *1493(H2 O) HELIX 1 1 SER A 43 GLN A 55 1 13 HELIX 2 2 ASN A 62 ASN A 77 1 16 HELIX 3 3 SER A 122 LEU A 126 1 5 HELIX 4 4 PRO A 129 PHE A 137 1 9 HELIX 5 5 THR A 159 GLN A 183 1 25 HELIX 6 6 THR A 189 THR A 203 1 15 HELIX 7 7 THR A 203 PHE A 211 1 9 HELIX 8 8 SER A 215 TYR A 224 1 10 HELIX 9 9 ASP A 235 LYS A 238 5 4 HELIX 10 10 SER A 252 ARG A 261 1 10 HELIX 11 11 ASN A 330 HIS A 339 1 10 HELIX 12 12 PHE A 360 SER A 374 1 15 HELIX 13 13 GLU A 375 SER A 388 1 14 HELIX 14 14 LEU A 389 ALA A 394 1 6 HELIX 15 15 TYR A 426 CYS A 448 1 23 HELIX 16 16 PRO A 468 VAL A 475 5 8 HELIX 17 17 THR A 534 LYS A 539 1 6 HELIX 18 18 SER B 43 GLN B 55 1 13 HELIX 19 19 ASN B 62 ASN B 77 1 16 HELIX 20 20 SER B 122 LEU B 126 1 5 HELIX 21 21 PRO B 129 PHE B 137 1 9 HELIX 22 22 THR B 159 GLN B 183 1 25 HELIX 23 23 THR B 189 THR B 203 1 15 HELIX 24 24 THR B 203 PHE B 211 1 9 HELIX 25 25 SER B 215 ALA B 225 1 11 HELIX 26 26 ASP B 235 LYS B 238 5 4 HELIX 27 27 SER B 252 ARG B 261 1 10 HELIX 28 28 ASN B 330 HIS B 339 1 10 HELIX 29 29 PHE B 360 SER B 374 1 15 HELIX 30 30 GLU B 375 SER B 388 1 14 HELIX 31 31 LEU B 389 SER B 395 5 7 HELIX 32 32 TYR B 426 CYS B 448 1 23 HELIX 33 33 PRO B 468 VAL B 475 5 8 HELIX 34 34 THR B 534 LYS B 539 1 6 SHEET 1 A 8 TYR A 38 GLY A 41 0 SHEET 2 A 8 VAL A 24 ASN A 31 -1 N TYR A 27 O GLY A 41 SHEET 3 A 8 MET A 8 THR A 15 -1 N SER A 10 O MET A 30 SHEET 4 A 8 ASP A 57 PHE A 60 1 O TYR A 59 N CYS A 11 SHEET 5 A 8 ARG A 113 ASP A 121 1 O TYR A 120 N LEU A 58 SHEET 6 A 8 TRP A 100 LYS A 110 -1 N GLY A 108 O ILE A 115 SHEET 7 A 8 THR A 89 ILE A 94 -1 N THR A 89 O CYS A 106 SHEET 8 A 8 LYS A 80 TRP A 81 1 N LYS A 80 O TYR A 90 SHEET 1 B 7 THR A 231 LEU A 233 0 SHEET 2 B 7 ILE A 452 ASP A 456 -1 O CYS A 455 N TRP A 232 SHEET 3 B 7 SER A 459 THR A 463 -1 O HIS A 461 N ILE A 453 SHEET 4 B 7 GLY A 245 VAL A 250 -1 N MET A 246 O LEU A 462 SHEET 5 B 7 TRP A 483 ARG A 496 -1 O ALA A 484 N ASP A 249 SHEET 6 B 7 THR A 499 VAL A 509 -1 O ASP A 503 N LYS A 490 SHEET 7 B 7 LYS A 512 GLU A 515 -1 O LYS A 512 N VAL A 509 SHEET 1 C 4 GLU A 241 ILE A 242 0 SHEET 2 C 4 TRP A 483 ARG A 496 -1 O ALA A 492 N ILE A 242 SHEET 3 C 4 THR A 499 VAL A 509 -1 O ASP A 503 N LYS A 490 SHEET 4 C 4 ASP A 523 CYS A 530 -1 O LYS A 525 N ILE A 504 SHEET 1 D 4 LEU A 263 GLU A 272 0 SHEET 2 D 4 TYR A 340 THR A 356 -1 O LYS A 352 N ILE A 269 SHEET 3 D 4 LEU A 283 LEU A 294 -1 N HIS A 287 O SER A 349 SHEET 4 D 4 ALA A 324 SER A 329 -1 O ALA A 324 N CYS A 290 SHEET 1 E 2 LYS A 402 LEU A 406 0 SHEET 2 E 2 LEU A 412 LEU A 416 -1 O ARG A 415 N VAL A 403 SHEET 1 F 2 SER A 551 VAL A 561 0 SHEET 2 F 2 GLY A 564 THR A 573 -1 O PHE A 572 N ARG A 552 SHEET 1 G 8 TYR B 38 GLY B 41 0 SHEET 2 G 8 VAL B 24 ASN B 31 -1 N TYR B 27 O GLY B 41 SHEET 3 G 8 MET B 8 THR B 15 -1 N SER B 10 O MET B 30 SHEET 4 G 8 ASP B 57 PHE B 60 1 O TYR B 59 N CYS B 11 SHEET 5 G 8 ARG B 113 ASP B 121 1 O TYR B 120 N LEU B 58 SHEET 6 G 8 TRP B 100 LYS B 110 -1 N ILE B 105 O THR B 117 SHEET 7 G 8 THR B 89 ILE B 94 -1 N ILE B 93 O TYR B 101 SHEET 8 G 8 LYS B 80 TRP B 81 1 N LYS B 80 O TYR B 90 SHEET 1 H 7 THR B 231 LEU B 233 0 SHEET 2 H 7 ILE B 452 ASP B 456 -1 O CYS B 455 N TRP B 232 SHEET 3 H 7 SER B 459 THR B 463 -1 O HIS B 461 N ILE B 453 SHEET 4 H 7 GLY B 245 VAL B 250 -1 N MET B 246 O LEU B 462 SHEET 5 H 7 TRP B 483 ARG B 496 -1 O ALA B 484 N ASP B 249 SHEET 6 H 7 THR B 499 VAL B 509 -1 O ASP B 503 N LYS B 490 SHEET 7 H 7 LYS B 512 GLU B 515 -1 O LYS B 512 N VAL B 509 SHEET 1 I 4 GLU B 241 ILE B 242 0 SHEET 2 I 4 TRP B 483 ARG B 496 -1 O ALA B 492 N ILE B 242 SHEET 3 I 4 THR B 499 VAL B 509 -1 O ASP B 503 N LYS B 490 SHEET 4 I 4 ASP B 523 CYS B 530 -1 O LYS B 529 N TYR B 500 SHEET 1 J 4 LEU B 263 GLU B 272 0 SHEET 2 J 4 TYR B 340 THR B 356 -1 O LYS B 352 N ILE B 269 SHEET 3 J 4 LEU B 283 LEU B 294 -1 N GLU B 293 O ASP B 341 SHEET 4 J 4 ALA B 324 SER B 329 -1 O ALA B 324 N CYS B 290 SHEET 1 K 2 LYS B 402 LEU B 406 0 SHEET 2 K 2 LEU B 412 LEU B 416 -1 O ARG B 415 N VAL B 403 SHEET 1 L 2 SER B 551 VAL B 561 0 SHEET 2 L 2 GLY B 564 THR B 573 -1 O ASP B 570 N LYS B 555 CISPEP 1 GLY A 312 ASN A 313 0 6.74 CISPEP 2 LYS B 143 GLY B 144 0 -9.82 CISPEP 3 GLY B 144 ASP B 145 0 -7.12 SITE 1 AC1 5 SER A 252 LYS A 371 LYS A 383 ASN A 387 SITE 2 AC1 5 HOH A9362 SITE 1 AC2 3 LYS B 238 GLN B 497 HOH B9134 SITE 1 AC3 4 ARG B 261 HOH B9103 HOH B9369 HOH B9476 SITE 1 AC4 3 SER A 260 THR A 357 HOH A9038 SITE 1 AC5 5 ILE B 474 LEU B 480 TYR B 482 HOH B9084 SITE 2 AC5 5 HOH B9273 SITE 1 AC6 5 LEU B 216 ASP B 219 LYS B 220 ARG B 223 SITE 2 AC6 5 PRO B 397 SITE 1 AC7 5 GLU B 241 ILE B 242 GLY B 243 ARG B 491 SITE 2 AC7 5 HOH B9146 SITE 1 AC8 7 LEU A 294 LYS A 295 GLU A 296 GLY A 297 SITE 2 AC8 7 TYR A 298 LYS A 317 TYR A 449 SITE 1 AC9 4 ASN A 234 ARG A 236 TYR A 449 HOH A9573 SITE 1 BC1 3 LYS A 490 ARG A 491 HOH A9164 SITE 1 BC2 6 LYS A 208 PHE A 211 THR A 213 HOH A9143 SITE 2 BC2 6 HOH A9515 HOH A9558 SITE 1 BC3 6 TYR A 259 ASP A 365 THR A 368 LEU A 480 SITE 2 BC3 6 HOH A9177 HOH A9780 SITE 1 BC4 2 TYR A 405 ARG A 415 SITE 1 BC5 4 SER A 43 ASP A 45 TRP A 277 HOH A9124 SITE 1 BC6 5 TYR B 259 ASP B 365 THR B 368 HOH B9397 SITE 2 BC6 5 HOH B9621 SITE 1 BC7 3 HIS B 485 THR B 488 GLY B 516 SITE 1 BC8 5 GLU B 33 HIS B 35 LEU B 178 LYS B 182 SITE 2 BC8 5 GLU B 296 SITE 1 BC9 3 VAL A 210 TYR A 265 EDO A9006 SITE 1 CC1 5 LYS A 206 THR A 357 GLY A 358 LEU A 359 SITE 2 CC1 5 EDO A9005 SITE 1 CC2 5 GLU A 334 TYR A 439 HOH A9126 HOH A9753 SITE 2 CC2 5 HOH A9773 SITE 1 CC3 6 GLN A 257 SER A 260 ARG A 261 THR A 440 SITE 2 CC3 6 GLY A 481 HOH A9171 SITE 1 CC4 5 VAL B 528 LYS B 529 CYS B 530 LYS B 538 SITE 2 CC4 5 HOH B9446 SITE 1 CC5 4 ASP A 456 THR A 457 ASP A 458 SER A 459 SITE 1 CC6 5 ILE A 269 ASP A 278 HOH A9370 HOH A9518 SITE 2 CC6 5 GLY B 111 SITE 1 CC7 3 HIS A 485 GLU A 486 GLY A 516 SITE 1 CC8 7 GLU A 338 THR A 443 ALA A 447 HOH A9089 SITE 2 CC8 7 HOH A9669 HOH A9672 HOH A9674 SITE 1 CC9 4 ILE A 504 GLU A 515 LYS A 525 HOH A9320 CRYST1 54.195 200.178 66.989 90.00 109.40 90.00 P 1 21 1 10 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018452 0.000000 0.006498 0.00000 SCALE2 0.000000 0.004996 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015826 0.00000