PDB Short entry for 2Q5C HEADER TRANSCRIPTION 31-MAY-07 2Q5C TITLE CRYSTAL STRUCTURE OF NTRC FAMILY TRANSCRIPTIONAL REGULATOR FROM TITLE 2 CLOSTRIDIUM ACETOBUTYLICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NTRC FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: RESIDUES 2-186; COMPND 5 SYNONYM: PAS AND AAA DOMAINS; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM ACETOBUTYLICUM ATCC 824; SOURCE 3 ORGANISM_TAXID: 272562; SOURCE 4 STRAIN: DSM 792, JCM 1419, LMG 5710, VKM B-1787; SOURCE 5 GENE: CA_C0459; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BS-PSGX4(BC) KEYWDS STRUCTURAL GENOMICS, NTRC FAMILY TRANSCRIPTIONAL REGULATOR, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, NYSGXRC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,M.DICKEY,R.TORO,M.IIZUKA,K.GROSHONG,L.RODGERS, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 21-FEB-24 2Q5C 1 REMARK REVDAT 6 03-FEB-21 2Q5C 1 AUTHOR JRNL REMARK SEQADV REVDAT 5 14-NOV-18 2Q5C 1 AUTHOR REVDAT 4 18-OCT-17 2Q5C 1 REMARK REVDAT 3 13-JUL-11 2Q5C 1 VERSN REVDAT 2 24-FEB-09 2Q5C 1 VERSN REVDAT 1 03-JUL-07 2Q5C 0 JRNL AUTH U.A.RAMAGOPAL,M.DICKEY,R.TORO,M.IIZUKA,K.GROSHONG,L.RODGERS, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF NTRC FAMILY TRANSCRIPTIONAL REGULATOR JRNL TITL 2 FROM CLOSTRIDIUM ACETOBUTYLICUM. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 68457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3455 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4552 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 228 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2920 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 389 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : 0.55000 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : 0.80000 REMARK 3 B13 (A**2) : 0.18000 REMARK 3 B23 (A**2) : -0.29000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.284 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3208 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4344 ; 1.430 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 5.153 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;33.869 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 633 ;12.651 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;13.643 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 512 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2264 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1529 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2250 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 316 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.201 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2027 ; 1.051 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3241 ; 1.755 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1276 ; 2.863 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1102 ; 4.432 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Q5C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68459 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.26300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX C/D/E REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM HEPES PH 7.5, 2% PEG 400, REMARK 280 2M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLU A 187 REMARK 465 GLY A 188 REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 MET D -1 REMARK 465 GLU D 187 REMARK 465 GLY D 188 REMARK 465 HIS D 189 REMARK 465 HIS D 190 REMARK 465 HIS D 191 REMARK 465 HIS D 192 REMARK 465 HIS D 193 REMARK 465 HIS D 194 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 760 O HOH A 895 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 36 -133.15 52.36 REMARK 500 LYS A 101 -52.29 65.30 REMARK 500 LEU D 36 -131.26 50.60 REMARK 500 LYS D 101 -52.05 65.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10108C RELATED DB: TARGETDB DBREF 2Q5C A 2 186 UNP Q97LU5 Q97LU5_CLOAB 2 186 DBREF 2Q5C D 2 186 UNP Q97LU5 Q97LU5_CLOAB 2 186 SEQADV 2Q5C MET A -1 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C SER A 0 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C LEU A 1 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C GLU A 187 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C GLY A 188 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C HIS A 189 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C HIS A 190 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C HIS A 191 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C HIS A 192 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C HIS A 193 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C HIS A 194 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C MET D -1 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C SER D 0 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C LEU D 1 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C GLU D 187 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C GLY D 188 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C HIS D 189 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C HIS D 190 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C HIS D 191 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C HIS D 192 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C HIS D 193 UNP Q97LU5 CLONING ARTIFACT SEQADV 2Q5C HIS D 194 UNP Q97LU5 CLONING ARTIFACT SEQRES 1 A 196 MET SER LEU SER LEU LYS ILE ALA LEU ILE SER GLN ASN SEQRES 2 A 196 GLU ASN LEU LEU ASN LEU PHE PRO LYS LEU ALA LEU GLU SEQRES 3 A 196 LYS ASN PHE ILE PRO ILE THR LYS THR ALA SER LEU THR SEQRES 4 A 196 ARG ALA SER LYS ILE ALA PHE GLY LEU GLN ASP GLU VAL SEQRES 5 A 196 ASP ALA ILE ILE SER ARG GLY ALA THR SER ASP TYR ILE SEQRES 6 A 196 LYS LYS SER VAL SER ILE PRO SER ILE SER ILE LYS VAL SEQRES 7 A 196 THR ARG PHE ASP THR MET ARG ALA VAL TYR ASN ALA LYS SEQRES 8 A 196 ARG PHE GLY ASN GLU LEU ALA LEU ILE ALA TYR LYS HIS SEQRES 9 A 196 SER ILE VAL ASP LYS HIS GLU ILE GLU ALA MET LEU GLY SEQRES 10 A 196 VAL LYS ILE LYS GLU PHE LEU PHE SER SER GLU ASP GLU SEQRES 11 A 196 ILE THR THR LEU ILE SER LYS VAL LYS THR GLU ASN ILE SEQRES 12 A 196 LYS ILE VAL VAL SER GLY LYS THR VAL THR ASP GLU ALA SEQRES 13 A 196 ILE LYS GLN GLY LEU TYR GLY GLU THR ILE ASN SER GLY SEQRES 14 A 196 GLU GLU SER LEU ARG ARG ALA ILE GLU GLU ALA LEU ASN SEQRES 15 A 196 LEU ILE GLU VAL ARG ASN GLU GLY HIS HIS HIS HIS HIS SEQRES 16 A 196 HIS SEQRES 1 D 196 MET SER LEU SER LEU LYS ILE ALA LEU ILE SER GLN ASN SEQRES 2 D 196 GLU ASN LEU LEU ASN LEU PHE PRO LYS LEU ALA LEU GLU SEQRES 3 D 196 LYS ASN PHE ILE PRO ILE THR LYS THR ALA SER LEU THR SEQRES 4 D 196 ARG ALA SER LYS ILE ALA PHE GLY LEU GLN ASP GLU VAL SEQRES 5 D 196 ASP ALA ILE ILE SER ARG GLY ALA THR SER ASP TYR ILE SEQRES 6 D 196 LYS LYS SER VAL SER ILE PRO SER ILE SER ILE LYS VAL SEQRES 7 D 196 THR ARG PHE ASP THR MET ARG ALA VAL TYR ASN ALA LYS SEQRES 8 D 196 ARG PHE GLY ASN GLU LEU ALA LEU ILE ALA TYR LYS HIS SEQRES 9 D 196 SER ILE VAL ASP LYS HIS GLU ILE GLU ALA MET LEU GLY SEQRES 10 D 196 VAL LYS ILE LYS GLU PHE LEU PHE SER SER GLU ASP GLU SEQRES 11 D 196 ILE THR THR LEU ILE SER LYS VAL LYS THR GLU ASN ILE SEQRES 12 D 196 LYS ILE VAL VAL SER GLY LYS THR VAL THR ASP GLU ALA SEQRES 13 D 196 ILE LYS GLN GLY LEU TYR GLY GLU THR ILE ASN SER GLY SEQRES 14 D 196 GLU GLU SER LEU ARG ARG ALA ILE GLU GLU ALA LEU ASN SEQRES 15 D 196 LEU ILE GLU VAL ARG ASN GLU GLY HIS HIS HIS HIS HIS SEQRES 16 D 196 HIS HET SO4 A 601 10 HET SO4 A 602 5 HET SO4 A 604 5 HET SO4 A 606 5 HET SO4 A 608 5 HET GOL A 701 6 HET GOL A 703 6 HET SO4 D 603 5 HET SO4 D 605 5 HET SO4 D 607 5 HET SO4 D 609 5 HET SO4 D 610 10 HET SO4 D 611 5 HET GOL D 702 12 HET GOL D 704 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 11(O4 S 2-) FORMUL 8 GOL 4(C3 H8 O3) FORMUL 18 HOH *389(H2 O) HELIX 1 1 ASN A 11 ASN A 26 1 16 HELIX 2 2 SER A 35 GLN A 47 1 13 HELIX 3 3 GLY A 57 LYS A 65 1 9 HELIX 4 4 THR A 77 LYS A 89 1 13 HELIX 5 5 ARG A 90 GLY A 92 5 3 HELIX 6 6 ASP A 106 GLY A 115 1 10 HELIX 7 7 SER A 125 ASP A 127 5 3 HELIX 8 8 GLU A 128 GLU A 139 1 12 HELIX 9 9 GLY A 147 GLN A 157 1 11 HELIX 10 10 GLY A 167 ASN A 186 1 20 HELIX 11 11 ASN D 11 ASN D 26 1 16 HELIX 12 12 SER D 35 GLN D 47 1 13 HELIX 13 13 GLY D 57 LYS D 65 1 9 HELIX 14 14 THR D 77 LYS D 89 1 13 HELIX 15 15 ASP D 106 GLY D 115 1 10 HELIX 16 16 SER D 125 ASP D 127 5 3 HELIX 17 17 GLU D 128 GLU D 139 1 12 HELIX 18 18 GLY D 147 GLN D 157 1 11 HELIX 19 19 GLY D 167 ASN D 186 1 20 SHEET 1 A 4 ILE A 28 THR A 33 0 SHEET 2 A 4 LYS A 4 SER A 9 1 N LEU A 7 O ILE A 30 SHEET 3 A 4 ALA A 52 ARG A 56 1 O ILE A 54 N ALA A 6 SHEET 4 A 4 SER A 71 ILE A 74 1 O ILE A 72 N ILE A 53 SHEET 1 B 4 LYS A 117 PHE A 123 0 SHEET 2 B 4 GLU A 94 TYR A 100 1 N LEU A 95 O LYS A 117 SHEET 3 B 4 ILE A 143 SER A 146 1 O VAL A 145 N ALA A 96 SHEET 4 B 4 TYR A 160 THR A 163 1 O GLU A 162 N VAL A 144 SHEET 1 C 4 ILE D 28 THR D 33 0 SHEET 2 C 4 LYS D 4 SER D 9 1 N LEU D 7 O ILE D 30 SHEET 3 C 4 ALA D 52 ARG D 56 1 O ILE D 54 N ALA D 6 SHEET 4 C 4 SER D 71 ILE D 74 1 O ILE D 72 N ILE D 53 SHEET 1 D 4 LYS D 117 PHE D 123 0 SHEET 2 D 4 GLU D 94 TYR D 100 1 N LEU D 95 O LYS D 117 SHEET 3 D 4 ILE D 143 SER D 146 1 O VAL D 145 N ALA D 96 SHEET 4 D 4 TYR D 160 THR D 163 1 O GLU D 162 N VAL D 144 SITE 1 AC1 12 SER A 0 LEU A 1 SER A 2 ARG A 78 SITE 2 AC1 12 HOH A 744 HOH A 778 ARG D 83 GLY D 167 SITE 3 AC1 12 GLU D 168 GLU D 169 HOH D 710 HOH D 809 SITE 1 AC2 5 LYS A 32 GLU A 49 LYS A 107 HIS A 108 SITE 2 AC2 5 HOH A 787 SITE 1 AC3 8 THR A 37 TYR A 62 SER A 125 GLU A 126 SITE 2 AC3 8 ASP A 127 HOH A 836 HOH A 882 HOH D 776 SITE 1 AC4 3 LYS A 32 THR A 33 HOH A 899 SITE 1 AC5 4 LYS A 25 ARG A 172 HOH A 725 HOH A 773 SITE 1 AC6 5 LYS D 32 GLU D 49 LYS D 107 HIS D 108 SITE 2 AC6 5 HOH D 769 SITE 1 AC7 6 ASN A 140 TYR D 62 SER D 125 GLU D 126 SITE 2 AC7 6 ASP D 127 HOH D 821 SITE 1 AC8 3 LYS D 32 THR D 33 HOH D 895 SITE 1 AC9 5 LYS D 25 ARG D 172 HOH D 728 HOH D 758 SITE 2 AC9 5 HOH D 840 SITE 1 BC1 12 ARG A 83 GLY A 167 GLU A 168 GLU A 169 SITE 2 BC1 12 HOH A 718 HOH A 890 SER D 0 LEU D 1 SITE 3 BC1 12 SER D 2 ARG D 78 HOH D 760 HOH D 819 SITE 1 BC2 7 THR A 77 ARG A 78 PHE A 79 THR D 77 SITE 2 BC2 7 ARG D 78 PHE D 79 HOH D 804 SITE 1 BC3 9 SER A 9 GLN A 10 ASN A 11 ARG A 56 SITE 2 BC3 9 GOL A 703 HOH A 706 HOH A 707 HOH A 814 SITE 3 BC3 9 HOH A 897 SITE 1 BC4 10 GLN A 10 ARG A 56 ALA A 58 THR A 59 SITE 2 BC4 10 GLY A 147 LYS A 148 THR A 149 VAL A 150 SITE 3 BC4 10 GOL A 701 HOH A 709 SITE 1 BC5 10 SER D 9 GLN D 10 ASN D 11 LEU D 14 SITE 2 BC5 10 ARG D 56 GOL D 704 HOH D 706 HOH D 712 SITE 3 BC5 10 HOH D 748 HOH D 793 SITE 1 BC6 10 GLN D 10 ARG D 56 ALA D 58 THR D 59 SITE 2 BC6 10 GLY D 147 LYS D 148 THR D 149 VAL D 150 SITE 3 BC6 10 GOL D 702 HOH D 709 CRYST1 45.950 45.948 58.284 72.94 72.98 82.07 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021763 -0.003031 -0.006073 0.00000 SCALE2 0.000000 0.021974 -0.006091 0.00000 SCALE3 0.000000 0.000000 0.018620 0.00000